EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000016067 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 1322 bases
Position: chrKN463549.1:1053724-1055045
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000019843	Smg4_UPF3	PF03467.15	2.7e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000021148	-	825	-	ENSPMGP00000019843	274 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000016067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000016067's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000016067	upf3b	59	63.804	ENSG00000169062	UPF3A	50	54.717	Homo_sapiens
ENSPMGG00000016067	upf3b	87	72.083	ENSG00000125351	UPF3B	96	66.507	Homo_sapiens
ENSPMGG00000016067	upf3b	95	86.641	ENSAPOG00000012775	upf3b	57	86.641	Acanthochromis_polyacanthus
ENSPMGG00000016067	upf3b	95	66.187	ENSAMEG00000000163	UPF3B	57	67.518	Ailuropoda_melanoleuca
ENSPMGG00000016067	upf3b	59	69.939	ENSACIG00000020468	upf3a	69	74.757	Amphilophus_citrinellus
ENSPMGG00000016067	upf3b	95	85.115	ENSACIG00000013582	upf3b	57	84.733	Amphilophus_citrinellus
ENSPMGG00000016067	upf3b	95	85.824	ENSAOCG00000000706	upf3b	57	85.824	Amphiprion_ocellaris
ENSPMGG00000016067	upf3b	95	86.590	ENSAPEG00000005545	upf3b	56	87.891	Amphiprion_percula
ENSPMGG00000016067	upf3b	95	86.641	ENSATEG00000018742	upf3b	57	86.641	Anabas_testudineus
ENSPMGG00000016067	upf3b	95	70.260	ENSACAG00000003625	UPF3B	57	71.591	Anolis_carolinensis
ENSPMGG00000016067	upf3b	95	51.311	ENSANAG00000033169	-	54	71.852	Aotus_nancymaae
ENSPMGG00000016067	upf3b	95	66.429	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSPMGG00000016067	upf3b	95	61.071	ENSANAG00000025598	-	84	55.596	Aotus_nancymaae
ENSPMGG00000016067	upf3b	95	86.973	ENSACLG00000001649	upf3b	56	88.281	Astatotilapia_calliptera
ENSPMGG00000016067	upf3b	94	81.538	ENSAMXG00000000199	upf3b	86	81.538	Astyanax_mexicanus
ENSPMGG00000016067	upf3b	54	66.892	ENSBTAG00000047365	-	75	61.818	Bos_taurus
ENSPMGG00000016067	upf3b	94	67.391	ENSBTAG00000035615	UPF3B	88	67.153	Bos_taurus
ENSPMGG00000016067	upf3b	94	66.423	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSPMGG00000016067	upf3b	95	66.065	ENSCAFG00000018426	UPF3B	60	66.187	Canis_familiaris
ENSPMGG00000016067	upf3b	95	63.406	ENSCAFG00020004074	UPF3B	58	63.309	Canis_lupus_dingo
ENSPMGG00000016067	upf3b	86	73.305	ENSCHIG00000018011	-	88	66.788	Capra_hircus
ENSPMGG00000016067	upf3b	94	67.029	ENSCHIG00000000247	-	56	67.273	Capra_hircus
ENSPMGG00000016067	upf3b	95	66.786	ENSTSYG00000014690	UPF3B	96	62.326	Carlito_syrichta
ENSPMGG00000016067	upf3b	59	59.146	ENSCCAG00000029813	-	53	60.000	Cebus_capucinus
ENSPMGG00000016067	upf3b	57	69.427	ENSCCAG00000021964	-	56	69.427	Cebus_capucinus
ENSPMGG00000016067	upf3b	94	67.153	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSPMGG00000016067	upf3b	95	67.626	ENSCLAG00000003260	UPF3B	59	67.626	Chinchilla_lanigera
ENSPMGG00000016067	upf3b	86	72.881	ENSCSAG00000018348	UPF3B	56	67.033	Chlorocebus_sabaeus
ENSPMGG00000016067	upf3b	95	69.288	ENSCPBG00000020685	UPF3B	58	66.182	Chrysemys_picta_bellii
ENSPMGG00000016067	upf3b	66	45.304	ENSCING00000008396	-	94	47.333	Ciona_intestinalis
ENSPMGG00000016067	upf3b	94	67.153	ENSCANG00000029220	UPF3B	85	67.153	Colobus_angolensis_palliatus
ENSPMGG00000016067	upf3b	93	62.500	ENSCGRG00001013643	-	74	61.151	Cricetulus_griseus_chok1gshd
ENSPMGG00000016067	upf3b	95	63.538	ENSCGRG00001006858	-	59	63.309	Cricetulus_griseus_chok1gshd
ENSPMGG00000016067	upf3b	82	72.000	ENSCGRG00000007627	Upf3b	53	72.000	Cricetulus_griseus_crigri
ENSPMGG00000016067	upf3b	93	84.766	ENSCSEG00000002046	upf3b	54	84.766	Cynoglossus_semilaevis
ENSPMGG00000016067	upf3b	95	85.171	ENSCVAG00000005030	upf3b	58	85.171	Cyprinodon_variegatus
ENSPMGG00000016067	upf3b	95	78.030	ENSDARG00000000489	upf3b	55	79.457	Danio_rerio
ENSPMGG00000016067	upf3b	94	67.153	ENSDNOG00000008665	UPF3B	56	67.399	Dasypus_novemcinctus
ENSPMGG00000016067	upf3b	95	65.108	ENSDORG00000006077	Upf3b	59	65.468	Dipodomys_ordii
ENSPMGG00000016067	upf3b	87	68.750	ENSEASG00005012919	UPF3B	58	63.571	Equus_asinus_asinus
ENSPMGG00000016067	upf3b	87	68.750	ENSECAG00000016947	UPF3B	58	63.571	Equus_caballus
ENSPMGG00000016067	upf3b	95	81.369	ENSELUG00000020389	upf3b	54	82.510	Esox_lucius
ENSPMGG00000016067	upf3b	95	66.071	ENSFCAG00000004388	UPF3B	58	66.071	Felis_catus
ENSPMGG00000016067	upf3b	93	67.021	ENSFALG00000001569	UPF3B	56	63.475	Ficedula_albicollis
ENSPMGG00000016067	upf3b	95	66.547	ENSFDAG00000018869	UPF3B	59	66.786	Fukomys_damarensis
ENSPMGG00000016067	upf3b	95	84.411	ENSFHEG00000017895	upf3b	57	84.411	Fundulus_heteroclitus
ENSPMGG00000016067	upf3b	95	76.046	ENSGMOG00000001621	upf3b	56	76.046	Gadus_morhua
ENSPMGG00000016067	upf3b	95	67.857	ENSGALG00000008618	UPF3B	60	67.474	Gallus_gallus
ENSPMGG00000016067	upf3b	54	68.243	ENSGALG00000016815	-	69	68.243	Gallus_gallus
ENSPMGG00000016067	upf3b	95	85.932	ENSGAFG00000000829	upf3b	58	85.932	Gambusia_affinis
ENSPMGG00000016067	upf3b	95	82.759	ENSGACG00000017435	upf3b	95	83.721	Gasterosteus_aculeatus
ENSPMGG00000016067	upf3b	66	58.889	ENSGAGG00000001952	UPF3A	80	68.571	Gopherus_agassizii
ENSPMGG00000016067	upf3b	95	73.507	ENSGAGG00000001219	UPF3B	59	72.101	Gopherus_agassizii
ENSPMGG00000016067	upf3b	94	67.153	ENSGGOG00000023995	UPF3B	85	67.153	Gorilla_gorilla
ENSPMGG00000016067	upf3b	95	86.973	ENSHBUG00000017393	upf3b	56	88.281	Haplochromis_burtoni
ENSPMGG00000016067	upf3b	95	61.011	ENSHGLG00000011189	-	56	66.807	Heterocephalus_glaber_female
ENSPMGG00000016067	upf3b	95	65.468	ENSHGLG00000019582	-	59	65.714	Heterocephalus_glaber_female
ENSPMGG00000016067	upf3b	95	65.468	ENSHGLG00100002042	-	60	65.714	Heterocephalus_glaber_male
ENSPMGG00000016067	upf3b	95	61.011	ENSHGLG00100001889	-	57	66.807	Heterocephalus_glaber_male
ENSPMGG00000016067	upf3b	60	69.697	ENSHCOG00000013985	upf3a	68	70.552	Hippocampus_comes
ENSPMGG00000016067	upf3b	95	82.443	ENSHCOG00000017004	upf3b	56	82.443	Hippocampus_comes
ENSPMGG00000016067	upf3b	93	82.171	ENSIPUG00000019249	upf3b	59	82.171	Ictalurus_punctatus
ENSPMGG00000016067	upf3b	95	66.187	ENSSTOG00000001101	UPF3B	59	66.547	Ictidomys_tridecemlineatus
ENSPMGG00000016067	upf3b	54	62.162	ENSSTOG00000030282	-	66	59.748	Ictidomys_tridecemlineatus
ENSPMGG00000016067	upf3b	54	63.514	ENSJJAG00000018099	-	84	56.180	Jaculus_jaculus
ENSPMGG00000016067	upf3b	95	64.388	ENSJJAG00000000053	Upf3b	58	64.388	Jaculus_jaculus
ENSPMGG00000016067	upf3b	95	85.878	ENSKMAG00000020300	upf3b	57	85.878	Kryptolebias_marmoratus
ENSPMGG00000016067	upf3b	95	82.824	ENSLBEG00000028689	upf3b	57	82.824	Labrus_bergylta
ENSPMGG00000016067	upf3b	59	68.712	ENSLBEG00000021570	upf3a	52	56.034	Labrus_bergylta
ENSPMGG00000016067	upf3b	95	74.144	ENSLACG00000008691	UPF3B	56	74.144	Latimeria_chalumnae
ENSPMGG00000016067	upf3b	93	77.821	ENSLOCG00000015238	upf3b	58	77.821	Lepisosteus_oculatus
ENSPMGG00000016067	upf3b	87	71.967	ENSLAFG00000001267	UPF3B	59	66.187	Loxodonta_africana
ENSPMGG00000016067	upf3b	73	58.768	ENSMFAG00000045275	-	94	58.416	Macaca_fascicularis
ENSPMGG00000016067	upf3b	94	67.153	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSPMGG00000016067	upf3b	73	56.398	ENSMMUG00000046682	-	94	55.941	Macaca_mulatta
ENSPMGG00000016067	upf3b	94	67.153	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSPMGG00000016067	upf3b	73	58.294	ENSMNEG00000040898	-	94	57.921	Macaca_nemestrina
ENSPMGG00000016067	upf3b	94	67.153	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSPMGG00000016067	upf3b	94	67.153	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSPMGG00000016067	upf3b	95	86.973	ENSMZEG00005007871	upf3b	56	88.281	Maylandia_zebra
ENSPMGG00000016067	upf3b	69	75.132	ENSMGAG00000007728	UPF3B	51	73.604	Meleagris_gallopavo
ENSPMGG00000016067	upf3b	95	62.590	ENSMAUG00000008705	Upf3b	50	68.750	Mesocricetus_auratus
ENSPMGG00000016067	upf3b	94	67.391	ENSMICG00000001743	UPF3B	85	67.153	Microcebus_murinus
ENSPMGG00000016067	upf3b	94	64.964	ENSMOCG00000017893	Upf3b	56	65.201	Microtus_ochrogaster
ENSPMGG00000016067	upf3b	95	80.989	ENSMMOG00000004183	upf3b	58	80.989	Mola_mola
ENSPMGG00000016067	upf3b	83	75.439	ENSMODG00000010232	UPF3B	53	75.439	Monodelphis_domestica
ENSPMGG00000016067	upf3b	50	61.765	ENSMALG00000002454	-	54	70.408	Monopterus_albus
ENSPMGG00000016067	upf3b	95	86.260	ENSMALG00000008042	upf3b	57	86.260	Monopterus_albus
ENSPMGG00000016067	upf3b	95	63.538	MGP_CAROLIEiJ_G0032999	Upf3b	56	68.707	Mus_caroli
ENSPMGG00000016067	upf3b	95	63.309	ENSMUSG00000036572	Upf3b	56	68.707	Mus_musculus
ENSPMGG00000016067	upf3b	95	63.899	MGP_PahariEiJ_G0031543	Upf3b	56	69.388	Mus_pahari
ENSPMGG00000016067	upf3b	95	63.309	MGP_SPRETEiJ_G0034152	Upf3b	56	68.707	Mus_spretus
ENSPMGG00000016067	upf3b	95	66.429	ENSMPUG00000001531	UPF3B	60	66.187	Mustela_putorius_furo
ENSPMGG00000016067	upf3b	87	72.083	ENSMLUG00000010821	UPF3B	51	72.083	Myotis_lucifugus
ENSPMGG00000016067	upf3b	93	65.809	ENSNGAG00000008231	Upf3b	58	64.748	Nannospalax_galili
ENSPMGG00000016067	upf3b	65	89.266	ENSNBRG00000011560	upf3b	96	88.652	Neolamprologus_brichardi
ENSPMGG00000016067	upf3b	87	72.083	ENSNLEG00000014897	UPF3B	63	77.778	Nomascus_leucogenys
ENSPMGG00000016067	upf3b	73	57.073	ENSNLEG00000027516	-	94	56.633	Nomascus_leucogenys
ENSPMGG00000016067	upf3b	73	59.406	ENSODEG00000006064	-	94	59.067	Octodon_degus
ENSPMGG00000016067	upf3b	98	65.385	ENSODEG00000002186	-	66	65.385	Octodon_degus
ENSPMGG00000016067	upf3b	58	58.491	ENSODEG00000009176	-	59	61.074	Octodon_degus
ENSPMGG00000016067	upf3b	76	55.702	ENSODEG00000007164	-	90	54.976	Octodon_degus
ENSPMGG00000016067	upf3b	51	64.539	ENSODEG00000000596	-	66	64.394	Octodon_degus
ENSPMGG00000016067	upf3b	95	88.506	ENSONIG00000002536	upf3b	55	89.844	Oreochromis_niloticus
ENSPMGG00000016067	upf3b	94	66.423	ENSOCUG00000010213	UPF3B	56	66.667	Oryctolagus_cuniculus
ENSPMGG00000016067	upf3b	93	83.984	ENSORLG00000001026	upf3b	56	83.984	Oryzias_latipes
ENSPMGG00000016067	upf3b	93	83.594	ENSORLG00020003758	upf3b	85	75.097	Oryzias_latipes_hni
ENSPMGG00000016067	upf3b	93	83.594	ENSORLG00015012954	upf3b	56	83.594	Oryzias_latipes_hsok
ENSPMGG00000016067	upf3b	93	84.766	ENSOMEG00000014736	upf3b	56	84.766	Oryzias_melastigma
ENSPMGG00000016067	upf3b	95	65.468	ENSOGAG00000004643	-	59	65.714	Otolemur_garnettii
ENSPMGG00000016067	upf3b	93	66.300	ENSOGAG00000033003	-	60	65.233	Otolemur_garnettii
ENSPMGG00000016067	upf3b	94	66.308	ENSOARG00000016051	-	56	66.547	Ovis_aries
ENSPMGG00000016067	upf3b	94	67.153	ENSPPAG00000040390	UPF3B	85	67.153	Pan_paniscus
ENSPMGG00000016067	upf3b	95	66.071	ENSPPRG00000023536	UPF3B	59	66.071	Panthera_pardus
ENSPMGG00000016067	upf3b	95	66.071	ENSPTIG00000015264	UPF3B	85	66.788	Panthera_tigris_altaica
ENSPMGG00000016067	upf3b	94	67.153	ENSPTRG00000022228	UPF3B	85	67.153	Pan_troglodytes
ENSPMGG00000016067	upf3b	73	58.095	ENSPANG00000029350	-	93	57.711	Papio_anubis
ENSPMGG00000016067	upf3b	94	67.153	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSPMGG00000016067	upf3b	93	78.682	ENSPKIG00000019226	upf3b	93	79.861	Paramormyrops_kingsleyae
ENSPMGG00000016067	upf3b	65	78.889	ENSPSIG00000005833	UPF3B	63	79.330	Pelodiscus_sinensis
ENSPMGG00000016067	upf3b	95	64.029	ENSPEMG00000012352	Upf3b	58	64.029	Peromyscus_maniculatus_bairdii
ENSPMGG00000016067	upf3b	78	53.953	ENSPCIG00000019590	-	69	65.605	Phascolarctos_cinereus
ENSPMGG00000016067	upf3b	95	85.932	ENSPLAG00000019922	upf3b	58	85.932	Poecilia_latipinna
ENSPMGG00000016067	upf3b	59	67.901	ENSPLAG00000011960	upf3a	64	73.874	Poecilia_latipinna
ENSPMGG00000016067	upf3b	95	85.932	ENSPLAG00000005105	upf3b	58	87.160	Poecilia_latipinna
ENSPMGG00000016067	upf3b	95	85.932	ENSPMEG00000023532	upf3b	58	85.932	Poecilia_mexicana
ENSPMGG00000016067	upf3b	52	88.028	ENSPREG00000012214	upf3b	95	88.028	Poecilia_reticulata
ENSPMGG00000016067	upf3b	94	66.788	ENSPPYG00000020675	-	82	67.033	Pongo_abelii
ENSPMGG00000016067	upf3b	94	66.058	ENSPCAG00000009464	UPF3B	56	67.399	Procavia_capensis
ENSPMGG00000016067	upf3b	95	66.308	ENSPCOG00000021960	UPF3B	85	66.788	Propithecus_coquereli
ENSPMGG00000016067	upf3b	93	57.455	ENSPVAG00000014075	UPF3B	56	57.455	Pteropus_vampyrus
ENSPMGG00000016067	upf3b	95	86.973	ENSPNYG00000009846	upf3b	56	88.281	Pundamilia_nyererei
ENSPMGG00000016067	upf3b	95	83.333	ENSPNAG00000021528	upf3b	87	82.692	Pygocentrus_nattereri
ENSPMGG00000016067	upf3b	95	63.309	ENSRNOG00000039994	Upf3b	58	63.309	Rattus_norvegicus
ENSPMGG00000016067	upf3b	72	70.707	ENSRBIG00000037219	UPF3B	52	69.307	Rhinopithecus_bieti
ENSPMGG00000016067	upf3b	94	67.153	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSPMGG00000016067	upf3b	95	65.827	ENSSBOG00000019740	UPF3B	99	66.986	Saimiri_boliviensis_boliviensis
ENSPMGG00000016067	upf3b	85	74.468	ENSSHAG00000008634	UPF3B	58	67.754	Sarcophilus_harrisii
ENSPMGG00000016067	upf3b	95	79.848	ENSSFOG00015005614	upf3b	57	81.323	Scleropages_formosus
ENSPMGG00000016067	upf3b	95	85.496	ENSSMAG00000012913	upf3b	84	86.434	Scophthalmus_maximus
ENSPMGG00000016067	upf3b	58	68.553	ENSSMAG00000003858	upf3a	95	60.417	Scophthalmus_maximus
ENSPMGG00000016067	upf3b	59	69.939	ENSSDUG00000009680	upf3a	57	77.419	Seriola_dumerili
ENSPMGG00000016067	upf3b	95	86.641	ENSSDUG00000005682	upf3b	57	86.641	Seriola_dumerili
ENSPMGG00000016067	upf3b	95	87.023	ENSSLDG00000003130	upf3b	57	87.023	Seriola_lalandi_dorsalis
ENSPMGG00000016067	upf3b	57	75.000	ENSSARG00000004147	UPF3B	50	73.636	Sorex_araneus
ENSPMGG00000016067	upf3b	95	66.071	ENSSPUG00000013082	UPF3B	57	63.899	Sphenodon_punctatus
ENSPMGG00000016067	upf3b	59	69.939	ENSSPAG00000007938	upf3a	72	68.790	Stegastes_partitus
ENSPMGG00000016067	upf3b	95	86.260	ENSSPAG00000009989	upf3b	57	86.260	Stegastes_partitus
ENSPMGG00000016067	upf3b	95	66.071	ENSSSCG00000012617	UPF3B	57	67.153	Sus_scrofa
ENSPMGG00000016067	upf3b	83	74.236	ENSTGUG00000003413	UPF3B	56	72.574	Taeniopygia_guttata
ENSPMGG00000016067	upf3b	95	82.759	ENSTRUG00000010645	upf3b	62	82.443	Takifugu_rubripes
ENSPMGG00000016067	upf3b	71	82.323	ENSTNIG00000015763	upf3b	58	73.946	Tetraodon_nigroviridis
ENSPMGG00000016067	upf3b	94	57.971	ENSTBEG00000003229	UPF3B	56	58.608	Tupaia_belangeri
ENSPMGG00000016067	upf3b	95	64.260	ENSUAMG00000024565	UPF3B	58	64.029	Ursus_americanus
ENSPMGG00000016067	upf3b	95	63.177	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSPMGG00000016067	upf3b	84	69.697	ENSXETG00000007440	upf3b	84	72.680	Xenopus_tropicalis
ENSPMGG00000016067	upf3b	93	86.047	ENSXCOG00000016586	upf3b	97	85.128	Xiphophorus_couchianus
ENSPMGG00000016067	upf3b	95	85.171	ENSXMAG00000013680	upf3b	58	85.171	Xiphophorus_maculatus