EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000017327 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 21707 bases
Position: chrKN461553.1:19734-41440
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000021401	UPF1_Zn_bind	PF09416.10	2.4e-75	1	1
ENSPMGP00000021401	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000022799	-	3303	-	ENSPMGP00000021401	1100 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000017327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000017327's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000017327	upf1	100	89.343	ENSG00000005007	UPF1	100	89.235	Homo_sapiens
ENSPMGG00000017327	upf1	100	91.674	ENSAPOG00000010916	-	100	91.584	Acanthochromis_polyacanthus
ENSPMGG00000017327	upf1	100	92.954	ENSAPOG00000023773	upf1	100	92.954	Acanthochromis_polyacanthus
ENSPMGG00000017327	upf1	100	88.693	ENSAMEG00000011474	UPF1	100	88.584	Ailuropoda_melanoleuca
ENSPMGG00000017327	upf1	93	91.642	ENSACIG00000010985	-	99	91.545	Amphilophus_citrinellus
ENSPMGG00000017327	upf1	100	93.563	ENSACIG00000019949	upf1	100	93.279	Amphilophus_citrinellus
ENSPMGG00000017327	upf1	100	92.832	ENSAOCG00000018519	upf1	100	92.563	Amphiprion_ocellaris
ENSPMGG00000017327	upf1	100	91.493	ENSAOCG00000006352	-	100	91.403	Amphiprion_ocellaris
ENSPMGG00000017327	upf1	100	91.493	ENSAPEG00000006292	-	100	91.403	Amphiprion_percula
ENSPMGG00000017327	upf1	100	92.832	ENSAPEG00000016344	upf1	100	92.563	Amphiprion_percula
ENSPMGG00000017327	upf1	100	91.493	ENSATEG00000016606	-	100	91.403	Anabas_testudineus
ENSPMGG00000017327	upf1	100	92.755	ENSATEG00000017867	upf1	100	92.576	Anabas_testudineus
ENSPMGG00000017327	upf1	95	90.669	ENSAPLG00000009175	UPF1	100	90.557	Anas_platyrhynchos
ENSPMGG00000017327	upf1	95	89.309	ENSANAG00000024107	UPF1	95	89.100	Aotus_nancymaae
ENSPMGG00000017327	upf1	100	91.222	ENSACLG00000022630	-	100	91.131	Astatotilapia_calliptera
ENSPMGG00000017327	upf1	100	93.654	ENSACLG00000007181	upf1	100	93.370	Astatotilapia_calliptera
ENSPMGG00000017327	upf1	100	92.928	ENSAMXG00000042187	upf1	100	92.928	Astyanax_mexicanus
ENSPMGG00000017327	upf1	100	88.713	ENSBTAG00000020922	UPF1	100	88.604	Bos_taurus
ENSPMGG00000017327	upf1	81	54.596	WBGene00004880	smg-2	83	54.596	Caenorhabditis_elegans
ENSPMGG00000017327	upf1	100	88.478	ENSCJAG00000019627	UPF1	100	88.370	Callithrix_jacchus
ENSPMGG00000017327	upf1	100	88.478	ENSCAFG00000014578	UPF1	100	88.370	Canis_familiaris
ENSPMGG00000017327	upf1	100	89.343	ENSCAFG00020012347	UPF1	100	89.235	Canis_lupus_dingo
ENSPMGG00000017327	upf1	100	89.581	ENSCHIG00000011018	UPF1	100	89.474	Capra_hircus
ENSPMGG00000017327	upf1	95	90.463	ENSTSYG00000008877	UPF1	97	90.255	Carlito_syrichta
ENSPMGG00000017327	upf1	96	89.813	ENSCAPG00000005758	UPF1	95	90.237	Cavia_aperea
ENSPMGG00000017327	upf1	100	89.714	ENSCPOG00000025463	UPF1	100	89.427	Cavia_porcellus
ENSPMGG00000017327	upf1	100	89.343	ENSCCAG00000032175	UPF1	100	89.235	Cebus_capucinus
ENSPMGG00000017327	upf1	94	90.702	ENSCATG00000040306	UPF1	98	90.503	Cercocebus_atys
ENSPMGG00000017327	upf1	95	90.445	ENSCLAG00000004037	UPF1	99	90.237	Chinchilla_lanigera
ENSPMGG00000017327	upf1	100	89.343	ENSCSAG00000005276	UPF1	100	89.235	Chlorocebus_sabaeus
ENSPMGG00000017327	upf1	100	89.643	ENSCPBG00000012513	UPF1	100	89.535	Chrysemys_picta_bellii
ENSPMGG00000017327	upf1	77	79.577	ENSCING00000021399	-	99	79.343	Ciona_intestinalis
ENSPMGG00000017327	upf1	99	72.018	ENSCSAVG00000006533	-	99	71.903	Ciona_savignyi
ENSPMGG00000017327	upf1	95	90.634	ENSCANG00000029819	UPF1	97	90.427	Colobus_angolensis_palliatus
ENSPMGG00000017327	upf1	100	89.384	ENSCGRG00001021067	Upf1	100	89.276	Cricetulus_griseus_chok1gshd
ENSPMGG00000017327	upf1	95	90.255	ENSCGRG00000013480	Upf1	98	90.047	Cricetulus_griseus_crigri
ENSPMGG00000017327	upf1	100	91.493	ENSCSEG00000016159	-	100	91.033	Cynoglossus_semilaevis
ENSPMGG00000017327	upf1	100	88.134	ENSCSEG00000017239	upf1	100	87.862	Cynoglossus_semilaevis
ENSPMGG00000017327	upf1	100	91.131	ENSCVAG00000010561	upf1	100	90.769	Cyprinodon_variegatus
ENSPMGG00000017327	upf1	100	93.019	ENSDARG00000016302	upf1	100	93.019	Danio_rerio
ENSPMGG00000017327	upf1	95	88.091	ENSDORG00000009984	Upf1	95	87.879	Dipodomys_ordii
ENSPMGG00000017327	upf1	84	72.465	FBgn0030354	Upf1	82	70.348	Drosophila_melanogaster
ENSPMGG00000017327	upf1	54	86.921	ENSEBUG00000010069	upf1	96	87.252	Eptatretus_burgeri
ENSPMGG00000017327	upf1	100	89.581	ENSEASG00005006549	UPF1	100	89.474	Equus_asinus_asinus
ENSPMGG00000017327	upf1	100	89.581	ENSECAG00000010639	UPF1	100	89.474	Equus_caballus
ENSPMGG00000017327	upf1	100	90.378	ENSELUG00000012916	-	100	90.549	Esox_lucius
ENSPMGG00000017327	upf1	100	92.412	ENSELUG00000020917	upf1	100	91.418	Esox_lucius
ENSPMGG00000017327	upf1	100	88.478	ENSFCAG00000009757	UPF1	100	88.370	Felis_catus
ENSPMGG00000017327	upf1	95	91.098	ENSFALG00000009312	UPF1	96	90.892	Ficedula_albicollis
ENSPMGG00000017327	upf1	95	90.350	ENSFDAG00000014816	UPF1	99	90.142	Fukomys_damarensis
ENSPMGG00000017327	upf1	100	91.039	ENSFHEG00000006428	upf1	96	95.527	Fundulus_heteroclitus
ENSPMGG00000017327	upf1	86	93.516	ENSFHEG00000016276	-	96	93.516	Fundulus_heteroclitus
ENSPMGG00000017327	upf1	100	89.812	ENSGMOG00000007541	upf1	100	89.705	Gadus_morhua
ENSPMGG00000017327	upf1	100	89.413	ENSGALG00000003220	UPF1	100	89.216	Gallus_gallus
ENSPMGG00000017327	upf1	63	95.821	ENSGAFG00000015443	-	85	95.821	Gambusia_affinis
ENSPMGG00000017327	upf1	100	90.950	ENSGAFG00000004831	upf1	100	90.769	Gambusia_affinis
ENSPMGG00000017327	upf1	100	90.045	ENSGAGG00000022217	UPF1	100	90.027	Gopherus_agassizii
ENSPMGG00000017327	upf1	95	91.587	ENSGGOG00000002608	UPF1	99	91.379	Gorilla_gorilla
ENSPMGG00000017327	upf1	87	94.967	ENSHBUG00000008939	upf1	95	94.967	Haplochromis_burtoni
ENSPMGG00000017327	upf1	89	83.296	ENSHBUG00000014694	upf1	100	83.296	Haplochromis_burtoni
ENSPMGG00000017327	upf1	100	88.127	ENSHGLG00000010900	UPF1	100	88.018	Heterocephalus_glaber_female
ENSPMGG00000017327	upf1	95	88.553	ENSHGLG00100005904	UPF1	96	88.341	Heterocephalus_glaber_male
ENSPMGG00000017327	upf1	100	90.876	ENSHCOG00000008918	upf1	100	90.950	Hippocampus_comes
ENSPMGG00000017327	upf1	100	93.019	ENSIPUG00000005108	UPF1	100	93.019	Ictalurus_punctatus
ENSPMGG00000017327	upf1	100	89.254	ENSSTOG00000009196	UPF1	100	89.146	Ictidomys_tridecemlineatus
ENSPMGG00000017327	upf1	100	88.584	ENSJJAG00000023151	Upf1	100	88.475	Jaculus_jaculus
ENSPMGG00000017327	upf1	100	91.312	ENSKMAG00000004962	upf1	100	91.131	Kryptolebias_marmoratus
ENSPMGG00000017327	upf1	100	91.320	ENSLBEG00000027848	-	100	90.958	Labrus_bergylta
ENSPMGG00000017327	upf1	100	90.901	ENSLBEG00000014862	upf1	100	92.294	Labrus_bergylta
ENSPMGG00000017327	upf1	64	90.612	ENSLACG00000008482	UPF1	100	90.300	Latimeria_chalumnae
ENSPMGG00000017327	upf1	100	91.848	ENSLOCG00000002072	upf1	100	91.486	Lepisosteus_oculatus
ENSPMGG00000017327	upf1	100	88.556	ENSLAFG00000014963	UPF1	100	88.438	Loxodonta_africana
ENSPMGG00000017327	upf1	100	89.105	ENSMFAG00000037748	UPF1	100	88.997	Macaca_fascicularis
ENSPMGG00000017327	upf1	100	88.869	ENSMMUG00000023286	UPF1	100	88.761	Macaca_mulatta
ENSPMGG00000017327	upf1	100	89.105	ENSMNEG00000000046	UPF1	100	88.997	Macaca_nemestrina
ENSPMGG00000017327	upf1	95	90.634	ENSMLEG00000028404	UPF1	99	90.427	Mandrillus_leucophaeus
ENSPMGG00000017327	upf1	100	91.501	ENSMAMG00000006231	-	100	91.501	Mastacembelus_armatus
ENSPMGG00000017327	upf1	100	90.828	ENSMAMG00000006229	upf1	100	92.576	Mastacembelus_armatus
ENSPMGG00000017327	upf1	100	91.222	ENSMZEG00005016386	-	100	91.131	Maylandia_zebra
ENSPMGG00000017327	upf1	100	92.742	ENSMZEG00005003489	upf1	100	92.806	Maylandia_zebra
ENSPMGG00000017327	upf1	95	90.265	ENSMGAG00000004745	UPF1	99	90.152	Meleagris_gallopavo
ENSPMGG00000017327	upf1	95	90.255	ENSMAUG00000011398	Upf1	95	90.047	Mesocricetus_auratus
ENSPMGG00000017327	upf1	100	89.254	ENSMICG00000001659	UPF1	100	89.146	Microcebus_murinus
ENSPMGG00000017327	upf1	100	88.516	ENSMOCG00000005699	Upf1	100	88.496	Microtus_ochrogaster
ENSPMGG00000017327	upf1	95	89.133	ENSMMOG00000007537	-	99	89.037	Mola_mola
ENSPMGG00000017327	upf1	100	92.831	ENSMMOG00000007881	upf1	100	92.831	Mola_mola
ENSPMGG00000017327	upf1	100	88.246	ENSMODG00000003689	UPF1	100	88.313	Monodelphis_domestica
ENSPMGG00000017327	upf1	100	90.352	ENSMALG00000018100	-	100	90.261	Monopterus_albus
ENSPMGG00000017327	upf1	100	92.650	ENSMALG00000000144	upf1	100	92.559	Monopterus_albus
ENSPMGG00000017327	upf1	100	89.295	MGP_CAROLIEiJ_G0031142	Upf1	100	89.187	Mus_caroli
ENSPMGG00000017327	upf1	100	89.295	ENSMUSG00000058301	Upf1	100	89.187	Mus_musculus
ENSPMGG00000017327	upf1	100	89.295	MGP_PahariEiJ_G0021607	Upf1	100	89.187	Mus_pahari
ENSPMGG00000017327	upf1	100	89.295	MGP_SPRETEiJ_G0032260	Upf1	100	89.187	Mus_spretus
ENSPMGG00000017327	upf1	100	89.343	ENSMPUG00000015516	UPF1	100	89.235	Mustela_putorius_furo
ENSPMGG00000017327	upf1	99	89.216	ENSMLUG00000012122	UPF1	99	89.107	Myotis_lucifugus
ENSPMGG00000017327	upf1	100	88.106	ENSNGAG00000024107	Upf1	100	87.996	Nannospalax_galili
ENSPMGG00000017327	upf1	100	87.871	ENSNBRG00000022069	-	100	90.513	Neolamprologus_brichardi
ENSPMGG00000017327	upf1	100	91.667	ENSNBRG00000000670	upf1	100	91.379	Neolamprologus_brichardi
ENSPMGG00000017327	upf1	95	85.052	ENSNLEG00000006062	UPF1	99	84.834	Nomascus_leucogenys
ENSPMGG00000017327	upf1	83	83.559	ENSMEUG00000014146	-	83	82.524	Notamacropus_eugenii
ENSPMGG00000017327	upf1	95	84.895	ENSOPRG00000014018	UPF1	87	89.171	Ochotona_princeps
ENSPMGG00000017327	upf1	100	89.346	ENSODEG00000012426	UPF1	100	89.148	Octodon_degus
ENSPMGG00000017327	upf1	100	91.312	ENSONIG00000012729	-	100	91.222	Oreochromis_niloticus
ENSPMGG00000017327	upf1	100	92.563	ENSONIG00000010452	upf1	100	92.626	Oreochromis_niloticus
ENSPMGG00000017327	upf1	100	89.065	ENSOANG00000004568	UPF1	100	88.781	Ornithorhynchus_anatinus
ENSPMGG00000017327	upf1	100	90.975	ENSORLG00000008453	upf1	100	90.769	Oryzias_latipes
ENSPMGG00000017327	upf1	100	90.893	ENSORLG00020014758	upf1	100	90.687	Oryzias_latipes_hni
ENSPMGG00000017327	upf1	100	90.893	ENSORLG00015010165	upf1	100	90.687	Oryzias_latipes_hsok
ENSPMGG00000017327	upf1	100	91.336	ENSOMEG00000003665	upf1	100	91.131	Oryzias_melastigma
ENSPMGG00000017327	upf1	100	89.254	ENSOGAG00000012866	UPF1	100	89.146	Otolemur_garnettii
ENSPMGG00000017327	upf1	96	87.649	ENSOARG00000010739	UPF1	100	87.351	Ovis_aries
ENSPMGG00000017327	upf1	95	90.634	ENSPPAG00000043884	UPF1	96	90.427	Pan_paniscus
ENSPMGG00000017327	upf1	100	88.478	ENSPPRG00000023470	UPF1	100	88.370	Panthera_pardus
ENSPMGG00000017327	upf1	95	89.323	ENSPTIG00000010159	UPF1	99	89.112	Panthera_tigris_altaica
ENSPMGG00000017327	upf1	100	89.105	ENSPTRG00000010721	UPF1	100	88.997	Pan_troglodytes
ENSPMGG00000017327	upf1	100	89.105	ENSPANG00000008847	UPF1	100	88.997	Papio_anubis
ENSPMGG00000017327	upf1	91	94.141	ENSPKIG00000006069	upf1	95	95.344	Paramormyrops_kingsleyae
ENSPMGG00000017327	upf1	70	89.637	ENSPSIG00000009491	UPF1	100	89.481	Pelodiscus_sinensis
ENSPMGG00000017327	upf1	100	88.516	ENSPEMG00000001085	Upf1	100	88.407	Peromyscus_maniculatus_bairdii
ENSPMGG00000017327	upf1	100	86.511	ENSPMAG00000001206	upf1	100	86.331	Petromyzon_marinus
ENSPMGG00000017327	upf1	100	89.600	ENSPCIG00000006156	UPF1	100	89.581	Phascolarctos_cinereus
ENSPMGG00000017327	upf1	100	92.252	ENSPLAG00000018155	-	100	91.261	Poecilia_latipinna
ENSPMGG00000017327	upf1	100	90.679	ENSPLAG00000016232	-	100	90.769	Poecilia_latipinna
ENSPMGG00000017327	upf1	100	91.968	ENSPMEG00000011443	-	100	91.916	Poecilia_mexicana
ENSPMGG00000017327	upf1	100	90.597	ENSPMEG00000016319	-	100	90.687	Poecilia_mexicana
ENSPMGG00000017327	upf1	100	92.176	ENSPREG00000009940	upf1	100	91.097	Poecilia_reticulata
ENSPMGG00000017327	upf1	100	90.588	ENSPREG00000011247	-	100	90.679	Poecilia_reticulata
ENSPMGG00000017327	upf1	100	83.803	ENSPPYG00000009752	UPF1	100	83.157	Pongo_abelii
ENSPMGG00000017327	upf1	70	97.980	ENSPCAG00000012962	UPF1	68	97.980	Procavia_capensis
ENSPMGG00000017327	upf1	100	88.948	ENSPCOG00000023813	UPF1	100	88.840	Propithecus_coquereli
ENSPMGG00000017327	upf1	68	94.872	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSPMGG00000017327	upf1	100	91.222	ENSPNYG00000016731	-	100	91.131	Pundamilia_nyererei
ENSPMGG00000017327	upf1	100	92.742	ENSPNYG00000003694	upf1	100	92.806	Pundamilia_nyererei
ENSPMGG00000017327	upf1	100	93.019	ENSPNAG00000025614	upf1	100	93.019	Pygocentrus_nattereri
ENSPMGG00000017327	upf1	100	89.295	ENSRNOG00000020134	Upf1	100	89.187	Rattus_norvegicus
ENSPMGG00000017327	upf1	95	88.269	ENSRBIG00000013894	UPF1	98	91.503	Rhinopithecus_bieti
ENSPMGG00000017327	upf1	95	90.634	ENSRROG00000040935	UPF1	98	91.503	Rhinopithecus_roxellana
ENSPMGG00000017327	upf1	74	57.283	YMR080C	NAM7	84	57.283	Saccharomyces_cerevisiae
ENSPMGG00000017327	upf1	95	90.634	ENSSBOG00000023632	UPF1	96	90.427	Saimiri_boliviensis_boliviensis
ENSPMGG00000017327	upf1	95	90.557	ENSSHAG00000010499	UPF1	99	90.350	Sarcophilus_harrisii
ENSPMGG00000017327	upf1	100	92.036	ENSSFOG00015021095	upf1	100	91.584	Scleropages_formosus
ENSPMGG00000017327	upf1	100	91.577	ENSSMAG00000005055	upf1	100	91.487	Scophthalmus_maximus
ENSPMGG00000017327	upf1	100	91.230	ENSSMAG00000021018	-	100	91.139	Scophthalmus_maximus
ENSPMGG00000017327	upf1	100	92.018	ENSSDUG00000013320	upf1	100	92.665	Seriola_dumerili
ENSPMGG00000017327	upf1	100	91.501	ENSSDUG00000009629	-	100	91.410	Seriola_dumerili
ENSPMGG00000017327	upf1	100	92.613	ENSSLDG00000020868	upf1	100	93.502	Seriola_lalandi_dorsalis
ENSPMGG00000017327	upf1	100	91.501	ENSSLDG00000006878	-	100	91.410	Seriola_lalandi_dorsalis
ENSPMGG00000017327	upf1	100	89.875	ENSSPUG00000010538	UPF1	100	89.856	Sphenodon_punctatus
ENSPMGG00000017327	upf1	100	91.033	ENSSPAG00000000003	upf1	100	90.926	Stegastes_partitus
ENSPMGG00000017327	upf1	100	91.493	ENSSPAG00000011521	-	100	91.403	Stegastes_partitus
ENSPMGG00000017327	upf1	100	89.492	ENSSSCG00000039301	UPF1	99	91.117	Sus_scrofa
ENSPMGG00000017327	upf1	82	86.277	ENSTGUG00000001057	UPF1	100	90.089	Taeniopygia_guttata
ENSPMGG00000017327	upf1	100	91.041	ENSTRUG00000005131	-	100	90.860	Takifugu_rubripes
ENSPMGG00000017327	upf1	100	92.377	ENSTRUG00000000150	upf1	100	91.826	Takifugu_rubripes
ENSPMGG00000017327	upf1	100	85.841	ENSTTRG00000011544	UPF1	100	85.638	Tursiops_truncatus
ENSPMGG00000017327	upf1	100	89.343	ENSUAMG00000007093	UPF1	100	89.235	Ursus_americanus
ENSPMGG00000017327	upf1	95	91.420	ENSUMAG00000006652	UPF1	99	91.950	Ursus_maritimus
ENSPMGG00000017327	upf1	100	89.343	ENSVVUG00000007797	UPF1	100	89.235	Vulpes_vulpes
ENSPMGG00000017327	upf1	100	76.687	ENSXETG00000013602	upf1	100	76.383	Xenopus_tropicalis
ENSPMGG00000017327	upf1	97	91.643	ENSXCOG00000015275	-	96	91.455	Xiphophorus_couchianus
ENSPMGG00000017327	upf1	94	91.401	ENSXCOG00000005764	-	99	91.208	Xiphophorus_couchianus
ENSPMGG00000017327	upf1	100	91.916	ENSXMAG00000001703	-	100	91.735	Xiphophorus_maculatus
ENSPMGG00000017327	upf1	100	90.868	ENSXMAG00000002540	-	100	90.687	Xiphophorus_maculatus