EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000017725 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 3154 bases
Position: chrKN461691.1:480818-483971
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000021901	HVSL	PF09749.9	2.3e-62	1	1
ENSPMGP00000021899	HVSL	PF09749.9	2.3e-62	1	1
ENSPMGP00000021890	HVSL	PF09749.9	1.4e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000023325	-	792	-	ENSPMGP00000021899	263 (aa)	-	-
ENSPMGT00000023327	-	783	-	ENSPMGP00000021901	260 (aa)	-	-
ENSPMGT00000023316	-	480	-	ENSPMGP00000021890	159 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000017725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000017725's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000017725	usb1	85	52.018	ENSG00000103005	USB1	99	51.174	Homo_sapiens
ENSPMGG00000017725	usb1	97	60.432	ENSAPOG00000011942	usb1	80	67.713	Acanthochromis_polyacanthus
ENSPMGG00000017725	usb1	86	51.111	ENSAMEG00000017205	USB1	84	51.111	Ailuropoda_melanoleuca
ENSPMGG00000017725	usb1	86	69.643	ENSACIG00000012234	usb1	83	69.643	Amphilophus_citrinellus
ENSPMGG00000017725	usb1	86	67.857	ENSAOCG00000014831	usb1	79	67.857	Amphiprion_ocellaris
ENSPMGG00000017725	usb1	86	67.857	ENSAPEG00000000296	usb1	79	67.857	Amphiprion_percula
ENSPMGG00000017725	usb1	86	67.411	ENSATEG00000009348	usb1	80	67.411	Anabas_testudineus
ENSPMGG00000017725	usb1	85	55.556	ENSAPLG00000002756	USB1	99	55.556	Anas_platyrhynchos
ENSPMGG00000017725	usb1	85	52.000	ENSACAG00000015481	USB1	98	52.000	Anolis_carolinensis
ENSPMGG00000017725	usb1	85	51.121	ENSANAG00000035640	USB1	84	51.121	Aotus_nancymaae
ENSPMGG00000017725	usb1	85	68.919	ENSACLG00000020586	usb1	79	68.919	Astatotilapia_calliptera
ENSPMGG00000017725	usb1	86	57.333	ENSAMXG00000040146	usb1	75	57.333	Astyanax_mexicanus
ENSPMGG00000017725	usb1	98	48.263	ENSBTAG00000015758	USB1	84	51.121	Bos_taurus
ENSPMGG00000017725	usb1	85	52.466	ENSCJAG00000011733	USB1	84	52.466	Callithrix_jacchus
ENSPMGG00000017725	usb1	86	51.111	ENSCAFG00000008556	USB1	60	51.111	Canis_familiaris
ENSPMGG00000017725	usb1	98	48.289	ENSCAFG00020009263	USB1	85	51.111	Canis_lupus_dingo
ENSPMGG00000017725	usb1	98	47.876	ENSCHIG00000024290	USB1	84	50.673	Capra_hircus
ENSPMGG00000017725	usb1	86	50.667	ENSTSYG00000006997	USB1	85	50.667	Carlito_syrichta
ENSPMGG00000017725	usb1	85	43.498	ENSCAPG00000009057	USB1	95	43.498	Cavia_aperea
ENSPMGG00000017725	usb1	98	48.473	ENSCPOG00000014325	USB1	83	51.570	Cavia_porcellus
ENSPMGG00000017725	usb1	85	52.018	ENSCCAG00000022132	USB1	84	52.018	Cebus_capucinus
ENSPMGG00000017725	usb1	85	52.466	ENSCATG00000032174	USB1	84	52.466	Cercocebus_atys
ENSPMGG00000017725	usb1	66	51.163	ENSCLAG00000007363	USB1	98	51.163	Chinchilla_lanigera
ENSPMGG00000017725	usb1	85	52.018	ENSCSAG00000004783	USB1	84	52.018	Chlorocebus_sabaeus
ENSPMGG00000017725	usb1	85	53.812	ENSCPBG00000026943	USB1	80	53.812	Chrysemys_picta_bellii
ENSPMGG00000017725	usb1	86	30.672	ENSCING00000011490	-	87	30.672	Ciona_intestinalis
ENSPMGG00000017725	usb1	85	31.064	ENSCSAVG00000000894	-	82	31.064	Ciona_savignyi
ENSPMGG00000017725	usb1	85	52.018	ENSCANG00000037135	USB1	84	52.018	Colobus_angolensis_palliatus
ENSPMGG00000017725	usb1	97	48.473	ENSCGRG00001011243	USB1	83	52.018	Cricetulus_griseus_chok1gshd
ENSPMGG00000017725	usb1	97	48.473	ENSCGRG00000013252	USB1	83	52.018	Cricetulus_griseus_crigri
ENSPMGG00000017725	usb1	98	54.909	ENSCSEG00000013881	usb1	99	53.818	Cynoglossus_semilaevis
ENSPMGG00000017725	usb1	88	62.500	ENSCVAG00000009252	usb1	99	62.500	Cyprinodon_variegatus
ENSPMGG00000017725	usb1	87	57.080	ENSDARG00000003841	usb1	82	57.080	Danio_rerio
ENSPMGG00000017725	usb1	85	52.018	ENSDORG00000001888	Usb1	84	52.018	Dipodomys_ordii
ENSPMGG00000017725	usb1	84	39.224	FBgn0037713	CG16790	87	39.224	Drosophila_melanogaster
ENSPMGG00000017725	usb1	98	40.996	ENSETEG00000019682	USB1	84	42.667	Echinops_telfairi
ENSPMGG00000017725	usb1	85	43.243	ENSEBUG00000005889	usb1	78	43.243	Eptatretus_burgeri
ENSPMGG00000017725	usb1	98	48.263	ENSEASG00005005484	USB1	85	50.667	Equus_asinus_asinus
ENSPMGG00000017725	usb1	98	47.692	ENSECAG00000019493	USB1	78	50.000	Equus_caballus
ENSPMGG00000017725	usb1	66	43.023	ENSEEUG00000000154	USB1	65	43.023	Erinaceus_europaeus
ENSPMGG00000017725	usb1	96	56.471	ENSELUG00000010974	usb1	82	61.333	Esox_lucius
ENSPMGG00000017725	usb1	86	50.667	ENSFCAG00000002693	USB1	84	50.667	Felis_catus
ENSPMGG00000017725	usb1	85	52.212	ENSFALG00000006876	USB1	83	52.212	Ficedula_albicollis
ENSPMGG00000017725	usb1	98	49.042	ENSFDAG00000010052	USB1	84	52.466	Fukomys_damarensis
ENSPMGG00000017725	usb1	86	58.264	ENSFHEG00000012334	usb1	76	67.895	Fundulus_heteroclitus
ENSPMGG00000017725	usb1	85	61.991	ENSGMOG00000004228	usb1	99	61.991	Gadus_morhua
ENSPMGG00000017725	usb1	85	54.709	ENSGALG00000035604	USB1	89	54.867	Gallus_gallus
ENSPMGG00000017725	usb1	98	58.394	ENSGAFG00000021890	usb1	81	66.368	Gambusia_affinis
ENSPMGG00000017725	usb1	86	64.732	ENSGACG00000003257	usb1	81	64.732	Gasterosteus_aculeatus
ENSPMGG00000017725	usb1	98	49.254	ENSGAGG00000022572	USB1	82	53.363	Gopherus_agassizii
ENSPMGG00000017725	usb1	85	52.466	ENSGGOG00000017147	USB1	84	52.466	Gorilla_gorilla
ENSPMGG00000017725	usb1	85	68.468	ENSHBUG00000009823	usb1	79	68.468	Haplochromis_burtoni
ENSPMGG00000017725	usb1	98	48.092	ENSHGLG00000016078	USB1	82	51.786	Heterocephalus_glaber_female
ENSPMGG00000017725	usb1	98	48.092	ENSHGLG00100005562	USB1	82	51.786	Heterocephalus_glaber_male
ENSPMGG00000017725	usb1	83	65.741	ENSHCOG00000015633	usb1	88	65.044	Hippocampus_comes
ENSPMGG00000017725	usb1	86	57.589	ENSIPUG00000008601	usb1	78	57.589	Ictalurus_punctatus
ENSPMGG00000017725	usb1	86	52.444	ENSSTOG00000007548	USB1	82	52.444	Ictidomys_tridecemlineatus
ENSPMGG00000017725	usb1	98	49.430	ENSJJAG00000021859	Usb1	84	52.889	Jaculus_jaculus
ENSPMGG00000017725	usb1	85	68.919	ENSKMAG00000007200	usb1	78	68.919	Kryptolebias_marmoratus
ENSPMGG00000017725	usb1	95	60.163	ENSLBEG00000008452	usb1	68	65.438	Labrus_bergylta
ENSPMGG00000017725	usb1	74	54.359	ENSLACG00000000105	USB1	67	55.385	Latimeria_chalumnae
ENSPMGG00000017725	usb1	86	54.018	ENSLOCG00000000465	usb1	79	54.018	Lepisosteus_oculatus
ENSPMGG00000017725	usb1	98	41.697	ENSLAFG00000002267	USB1	83	44.397	Loxodonta_africana
ENSPMGG00000017725	usb1	85	52.466	ENSMFAG00000003926	USB1	84	52.466	Macaca_fascicularis
ENSPMGG00000017725	usb1	85	52.466	ENSMMUG00000022669	USB1	84	52.466	Macaca_mulatta
ENSPMGG00000017725	usb1	85	52.018	ENSMNEG00000042487	USB1	84	52.018	Macaca_nemestrina
ENSPMGG00000017725	usb1	85	52.466	ENSMLEG00000028756	USB1	84	52.466	Mandrillus_leucophaeus
ENSPMGG00000017725	usb1	99	59.353	ENSMAMG00000015092	usb1	81	68.750	Mastacembelus_armatus
ENSPMGG00000017725	usb1	85	68.919	ENSMZEG00005010008	usb1	79	68.919	Maylandia_zebra
ENSPMGG00000017725	usb1	98	49.042	ENSMAUG00000007832	Usb1	84	52.018	Mesocricetus_auratus
ENSPMGG00000017725	usb1	86	52.444	ENSMICG00000004900	USB1	85	52.444	Microcebus_murinus
ENSPMGG00000017725	usb1	98	49.049	ENSMOCG00000022647	Usb1	84	52.466	Microtus_ochrogaster
ENSPMGG00000017725	usb1	98	64.202	ENSMMOG00000000490	usb1	100	64.202	Mola_mola
ENSPMGG00000017725	usb1	83	51.389	ENSMODG00000014067	USB1	83	51.570	Monodelphis_domestica
ENSPMGG00000017725	usb1	85	65.766	ENSMALG00000005930	usb1	79	65.766	Monopterus_albus
ENSPMGG00000017725	usb1	98	49.425	MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	Mus_caroli
ENSPMGG00000017725	usb1	98	49.425	ENSMUSG00000031792	Usb1	99	50.000	Mus_musculus
ENSPMGG00000017725	usb1	97	50.192	MGP_PahariEiJ_G0023019	Usb1	100	52.137	Mus_pahari
ENSPMGG00000017725	usb1	98	49.425	MGP_SPRETEiJ_G0032540	Usb1	84	52.444	Mus_spretus
ENSPMGG00000017725	usb1	86	50.667	ENSMPUG00000004684	USB1	80	50.667	Mustela_putorius_furo
ENSPMGG00000017725	usb1	86	52.444	ENSMLUG00000007400	USB1	97	52.444	Myotis_lucifugus
ENSPMGG00000017725	usb1	86	52.444	ENSNGAG00000009703	Usb1	84	52.444	Nannospalax_galili
ENSPMGG00000017725	usb1	82	65.094	ENSNBRG00000008747	usb1	99	65.094	Neolamprologus_brichardi
ENSPMGG00000017725	usb1	79	52.657	ENSNLEG00000003340	USB1	83	52.657	Nomascus_leucogenys
ENSPMGG00000017725	usb1	69	52.294	ENSMEUG00000003328	-	72	52.294	Notamacropus_eugenii
ENSPMGG00000017725	usb1	72	49.593	ENSOPRG00000011803	USB1	54	53.175	Ochotona_princeps
ENSPMGG00000017725	usb1	98	50.575	ENSODEG00000016214	USB1	83	53.363	Octodon_degus
ENSPMGG00000017725	usb1	98	58.845	ENSONIG00000011063	usb1	80	68.919	Oreochromis_niloticus
ENSPMGG00000017725	usb1	85	51.786	ENSOANG00000012118	USB1	94	51.786	Ornithorhynchus_anatinus
ENSPMGG00000017725	usb1	97	60.741	ENSORLG00000012479	usb1	99	60.741	Oryzias_latipes
ENSPMGG00000017725	usb1	87	65.198	ENSORLG00020018671	usb1	84	65.198	Oryzias_latipes_hni
ENSPMGG00000017725	usb1	87	65.639	ENSORLG00015009679	usb1	84	65.639	Oryzias_latipes_hsok
ENSPMGG00000017725	usb1	85	68.018	ENSOMEG00000012930	usb1	80	68.018	Oryzias_melastigma
ENSPMGG00000017725	usb1	86	48.444	ENSOGAG00000003273	USB1	84	48.444	Otolemur_garnettii
ENSPMGG00000017725	usb1	85	51.121	ENSOARG00000001107	USB1	85	51.121	Ovis_aries
ENSPMGG00000017725	usb1	85	52.018	ENSPPAG00000042137	USB1	84	52.018	Pan_paniscus
ENSPMGG00000017725	usb1	86	50.222	ENSPPRG00000024797	USB1	84	50.222	Panthera_pardus
ENSPMGG00000017725	usb1	86	49.778	ENSPTIG00000007506	USB1	84	49.778	Panthera_tigris_altaica
ENSPMGG00000017725	usb1	82	51.643	ENSPTRG00000008172	USB1	99	51.643	Pan_troglodytes
ENSPMGG00000017725	usb1	85	52.466	ENSPANG00000025138	USB1	84	52.466	Papio_anubis
ENSPMGG00000017725	usb1	85	59.193	ENSPKIG00000015109	usb1	75	59.193	Paramormyrops_kingsleyae
ENSPMGG00000017725	usb1	85	43.111	ENSPSIG00000004305	USB1	99	43.111	Pelodiscus_sinensis
ENSPMGG00000017725	usb1	97	47.368	ENSPEMG00000016183	Usb1	82	52.018	Peromyscus_maniculatus_bairdii
ENSPMGG00000017725	usb1	86	47.577	ENSPMAG00000000462	usb1	96	47.577	Petromyzon_marinus
ENSPMGG00000017725	usb1	98	59.273	ENSPFOG00000011130	usb1	80	67.265	Poecilia_formosa
ENSPMGG00000017725	usb1	98	58.909	ENSPLAG00000009820	usb1	80	66.816	Poecilia_latipinna
ENSPMGG00000017725	usb1	98	59.273	ENSPMEG00000006402	usb1	80	67.265	Poecilia_mexicana
ENSPMGG00000017725	usb1	86	58.264	ENSPREG00000001047	usb1	77	68.421	Poecilia_reticulata
ENSPMGG00000017725	usb1	80	48.341	ENSPPYG00000007401	USB1	84	48.341	Pongo_abelii
ENSPMGG00000017725	usb1	86	51.111	ENSPCOG00000022612	USB1	85	51.111	Propithecus_coquereli
ENSPMGG00000017725	usb1	98	47.710	ENSPVAG00000004613	USB1	86	50.673	Pteropus_vampyrus
ENSPMGG00000017725	usb1	85	68.919	ENSPNYG00000022262	usb1	79	68.919	Pundamilia_nyererei
ENSPMGG00000017725	usb1	93	56.098	ENSPNAG00000011736	usb1	78	58.772	Pygocentrus_nattereri
ENSPMGG00000017725	usb1	98	49.425	ENSRNOG00000013216	Usb1	84	52.889	Rattus_norvegicus
ENSPMGG00000017725	usb1	85	48.879	ENSRBIG00000044466	USB1	99	51.643	Rhinopithecus_bieti
ENSPMGG00000017725	usb1	85	52.466	ENSRROG00000029211	USB1	84	52.466	Rhinopithecus_roxellana
ENSPMGG00000017725	usb1	85	52.466	ENSSBOG00000029362	USB1	84	52.466	Saimiri_boliviensis_boliviensis
ENSPMGG00000017725	usb1	83	48.387	ENSSHAG00000006993	USB1	89	48.661	Sarcophilus_harrisii
ENSPMGG00000017725	usb1	86	59.821	ENSSFOG00015023663	usb1	71	59.821	Scleropages_formosus
ENSPMGG00000017725	usb1	85	63.136	ENSSMAG00000015834	usb1	80	63.136	Scophthalmus_maximus
ENSPMGG00000017725	usb1	87	70.796	ENSSDUG00000002949	usb1	84	70.796	Seriola_dumerili
ENSPMGG00000017725	usb1	85	70.721	ENSSLDG00000014174	usb1	79	70.721	Seriola_lalandi_dorsalis
ENSPMGG00000017725	usb1	82	50.235	ENSSPUG00000006741	USB1	99	50.235	Sphenodon_punctatus
ENSPMGG00000017725	usb1	86	68.750	ENSSPAG00000007484	usb1	79	68.750	Stegastes_partitus
ENSPMGG00000017725	usb1	97	48.669	ENSSSCG00000002807	USB1	84	52.000	Sus_scrofa
ENSPMGG00000017725	usb1	81	53.555	ENSTGUG00000004792	USB1	86	52.941	Taeniopygia_guttata
ENSPMGG00000017725	usb1	99	62.825	ENSTRUG00000021069	usb1	83	69.643	Takifugu_rubripes
ENSPMGG00000017725	usb1	99	56.154	ENSTNIG00000000626	usb1	85	59.031	Tetraodon_nigroviridis
ENSPMGG00000017725	usb1	85	38.117	ENSTBEG00000001507	USB1	96	38.117	Tupaia_belangeri
ENSPMGG00000017725	usb1	86	51.111	ENSUAMG00000016823	USB1	84	51.111	Ursus_americanus
ENSPMGG00000017725	usb1	82	50.000	ENSUMAG00000021369	USB1	100	50.000	Ursus_maritimus
ENSPMGG00000017725	usb1	86	50.667	ENSVVUG00000023700	USB1	87	50.667	Vulpes_vulpes
ENSPMGG00000017725	usb1	98	50.000	ENSXETG00000013795	usb1	89	53.571	Xenopus_tropicalis
ENSPMGG00000017725	usb1	85	66.816	ENSXMAG00000024687	usb1	66	66.816	Xiphophorus_maculatus