EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000023096 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 4385 bases
Position: chrKN463448.1:522314-526698
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000028697	PRP21_like_P	PF12230.8	2.7e-50	1	1
ENSPMGP00000028697	Surp	PF01805.20	1.2e-42	1	2
ENSPMGP00000028697	Surp	PF01805.20	1.2e-42	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000030550	-	2256	-	ENSPMGP00000028697	751 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000023096's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000023096's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000023096	sf3a1	100	84.555	ENSG00000099995	SF3A1	96	84.424	Homo_sapiens
ENSPMGG00000023096	sf3a1	100	91.634	ENSAPOG00000020465	sf3a1	97	90.980	Acanthochromis_polyacanthus
ENSPMGG00000023096	sf3a1	100	84.031	ENSAMEG00000007737	SF3A1	96	84.031	Ailuropoda_melanoleuca
ENSPMGG00000023096	sf3a1	100	90.980	ENSACIG00000020672	sf3a1	97	90.850	Amphilophus_citrinellus
ENSPMGG00000023096	sf3a1	100	91.895	ENSAOCG00000003060	sf3a1	97	91.242	Amphiprion_ocellaris
ENSPMGG00000023096	sf3a1	100	91.895	ENSAPEG00000010735	sf3a1	97	91.242	Amphiprion_percula
ENSPMGG00000023096	sf3a1	100	89.935	ENSATEG00000021201	sf3a1	96	89.935	Anabas_testudineus
ENSPMGG00000023096	sf3a1	99	84.127	ENSAPLG00000009057	SF3A1	99	83.922	Anas_platyrhynchos
ENSPMGG00000023096	sf3a1	100	81.656	ENSACAG00000009415	SF3A1	97	80.101	Anolis_carolinensis
ENSPMGG00000023096	sf3a1	100	84.162	ENSANAG00000032045	SF3A1	96	84.162	Aotus_nancymaae
ENSPMGG00000023096	sf3a1	100	91.219	ENSACLG00000012622	sf3a1	97	92.267	Astatotilapia_calliptera
ENSPMGG00000023096	sf3a1	100	86.458	ENSAMXG00000005382	sf3a1	97	87.287	Astyanax_mexicanus
ENSPMGG00000023096	sf3a1	100	84.293	ENSBTAG00000003390	SF3A1	96	84.293	Bos_taurus
ENSPMGG00000023096	sf3a1	99	39.575	WBGene00004188	prp-21	88	44.553	Caenorhabditis_elegans
ENSPMGG00000023096	sf3a1	100	84.293	ENSCJAG00000010370	SF3A1	96	84.293	Callithrix_jacchus
ENSPMGG00000023096	sf3a1	100	84.031	ENSCAFG00000012559	SF3A1	96	84.031	Canis_familiaris
ENSPMGG00000023096	sf3a1	100	84.031	ENSCAFG00020000838	SF3A1	96	84.031	Canis_lupus_dingo
ENSPMGG00000023096	sf3a1	100	84.717	ENSCHIG00000018642	SF3A1	96	84.424	Capra_hircus
ENSPMGG00000023096	sf3a1	100	84.162	ENSTSYG00000004739	SF3A1	96	84.162	Carlito_syrichta
ENSPMGG00000023096	sf3a1	97	67.476	ENSCAPG00000015414	SF3A1	97	67.930	Cavia_aperea
ENSPMGG00000023096	sf3a1	100	84.686	ENSCPOG00000014589	SF3A1	96	84.293	Cavia_porcellus
ENSPMGG00000023096	sf3a1	100	84.162	ENSCCAG00000032006	SF3A1	96	84.162	Cebus_capucinus
ENSPMGG00000023096	sf3a1	100	84.162	ENSCATG00000029241	SF3A1	96	84.424	Cercocebus_atys
ENSPMGG00000023096	sf3a1	100	84.031	ENSCLAG00000006508	SF3A1	96	84.293	Chinchilla_lanigera
ENSPMGG00000023096	sf3a1	100	84.162	ENSCSAG00000009470	SF3A1	96	84.424	Chlorocebus_sabaeus
ENSPMGG00000023096	sf3a1	60	88.931	ENSCHOG00000005201	SF3A1	68	90.076	Choloepus_hoffmanni
ENSPMGG00000023096	sf3a1	100	83.333	ENSCPBG00000007595	SF3A1	97	84.273	Chrysemys_picta_bellii
ENSPMGG00000023096	sf3a1	100	52.503	ENSCING00000008526	-	66	57.663	Ciona_intestinalis
ENSPMGG00000023096	sf3a1	100	51.429	ENSCSAVG00000005608	-	92	63.964	Ciona_savignyi
ENSPMGG00000023096	sf3a1	100	84.162	ENSCANG00000033564	SF3A1	96	84.424	Colobus_angolensis_palliatus
ENSPMGG00000023096	sf3a1	99	84.453	ENSCGRG00001008933	Sf3a1	96	84.162	Cricetulus_griseus_chok1gshd
ENSPMGG00000023096	sf3a1	99	84.453	ENSCGRG00000006127	Sf3a1	96	84.162	Cricetulus_griseus_crigri
ENSPMGG00000023096	sf3a1	100	90.183	ENSCSEG00000010792	sf3a1	97	89.921	Cynoglossus_semilaevis
ENSPMGG00000023096	sf3a1	100	90.170	ENSCVAG00000004560	sf3a1	97	89.253	Cyprinodon_variegatus
ENSPMGG00000023096	sf3a1	100	84.494	ENSDARG00000041887	sf3a1	97	85.433	Danio_rerio
ENSPMGG00000023096	sf3a1	100	83.290	ENSDNOG00000010629	SF3A1	96	83.681	Dasypus_novemcinctus
ENSPMGG00000023096	sf3a1	100	84.555	ENSDORG00000005613	Sf3a1	96	84.162	Dipodomys_ordii
ENSPMGG00000023096	sf3a1	83	60.788	FBgn0266917	Sf3a1	82	59.444	Drosophila_melanogaster
ENSPMGG00000023096	sf3a1	87	83.033	ENSETEG00000017194	SF3A1	95	83.333	Echinops_telfairi
ENSPMGG00000023096	sf3a1	99	67.344	ENSEBUG00000001285	sf3a1	95	68.234	Eptatretus_burgeri
ENSPMGG00000023096	sf3a1	100	84.293	ENSEASG00005010254	SF3A1	96	84.293	Equus_asinus_asinus
ENSPMGG00000023096	sf3a1	100	84.293	ENSECAG00000023962	SF3A1	96	84.293	Equus_caballus
ENSPMGG00000023096	sf3a1	76	90.164	ENSEEUG00000003159	SF3A1	81	90.164	Erinaceus_europaeus
ENSPMGG00000023096	sf3a1	100	84.766	ENSELUG00000022578	sf3a1	97	83.333	Esox_lucius
ENSPMGG00000023096	sf3a1	100	84.162	ENSFCAG00000011932	SF3A1	96	84.162	Felis_catus
ENSPMGG00000023096	sf3a1	99	83.422	ENSFALG00000006944	SF3A1	96	83.486	Ficedula_albicollis
ENSPMGG00000023096	sf3a1	100	84.031	ENSFDAG00000009560	SF3A1	96	84.293	Fukomys_damarensis
ENSPMGG00000023096	sf3a1	100	90.719	ENSFHEG00000010866	sf3a1	97	90.196	Fundulus_heteroclitus
ENSPMGG00000023096	sf3a1	100	87.879	ENSGMOG00000016024	sf3a1	97	87.599	Gadus_morhua
ENSPMGG00000023096	sf3a1	99	84.238	ENSGALG00000007937	SF3A1	96	83.879	Gallus_gallus
ENSPMGG00000023096	sf3a1	100	90.957	ENSGAFG00000009111	sf3a1	97	89.908	Gambusia_affinis
ENSPMGG00000023096	sf3a1	100	88.801	ENSGACG00000011893	sf3a1	97	87.484	Gasterosteus_aculeatus
ENSPMGG00000023096	sf3a1	96	82.853	ENSGAGG00000000762	SF3A1	96	83.699	Gopherus_agassizii
ENSPMGG00000023096	sf3a1	100	84.555	ENSGGOG00000012631	SF3A1	96	84.424	Gorilla_gorilla
ENSPMGG00000023096	sf3a1	100	91.743	ENSHBUG00000015795	sf3a1	97	92.398	Haplochromis_burtoni
ENSPMGG00000023096	sf3a1	100	84.293	ENSHGLG00000007907	SF3A1	96	84.293	Heterocephalus_glaber_female
ENSPMGG00000023096	sf3a1	100	84.293	ENSHGLG00100013799	SF3A1	96	84.293	Heterocephalus_glaber_male
ENSPMGG00000023096	sf3a1	100	87.795	ENSHCOG00000015423	sf3a1	98	86.632	Hippocampus_comes
ENSPMGG00000023096	sf3a1	100	83.922	ENSIPUG00000002470	sf3a1	98	84.444	Ictalurus_punctatus
ENSPMGG00000023096	sf3a1	100	84.293	ENSSTOG00000013892	SF3A1	96	84.293	Ictidomys_tridecemlineatus
ENSPMGG00000023096	sf3a1	100	83.508	ENSJJAG00000022566	Sf3a1	96	84.293	Jaculus_jaculus
ENSPMGG00000023096	sf3a1	100	89.412	ENSKMAG00000002400	sf3a1	97	88.497	Kryptolebias_marmoratus
ENSPMGG00000023096	sf3a1	100	89.895	ENSLBEG00000022974	sf3a1	97	88.451	Labrus_bergylta
ENSPMGG00000023096	sf3a1	100	82.484	ENSLACG00000003565	SF3A1	97	83.137	Latimeria_chalumnae
ENSPMGG00000023096	sf3a1	100	86.068	ENSLOCG00000008251	sf3a1	97	84.505	Lepisosteus_oculatus
ENSPMGG00000023096	sf3a1	100	84.162	ENSLAFG00000000448	SF3A1	96	84.162	Loxodonta_africana
ENSPMGG00000023096	sf3a1	99	55.963	ENSLAFG00000026032	-	97	54.784	Loxodonta_africana
ENSPMGG00000023096	sf3a1	100	84.293	ENSMFAG00000031979	SF3A1	96	84.293	Macaca_fascicularis
ENSPMGG00000023096	sf3a1	100	84.293	ENSMMUG00000005547	SF3A1	96	84.293	Macaca_mulatta
ENSPMGG00000023096	sf3a1	100	84.424	ENSMNEG00000037229	SF3A1	96	84.424	Macaca_nemestrina
ENSPMGG00000023096	sf3a1	100	84.162	ENSMLEG00000041908	SF3A1	96	84.424	Mandrillus_leucophaeus
ENSPMGG00000023096	sf3a1	100	90.196	ENSMAMG00000006460	sf3a1	96	89.281	Mastacembelus_armatus
ENSPMGG00000023096	sf3a1	100	91.219	ENSMZEG00005009633	sf3a1	97	92.267	Maylandia_zebra
ENSPMGG00000023096	sf3a1	99	84.238	ENSMGAG00000001330	SF3A1	99	83.879	Meleagris_gallopavo
ENSPMGG00000023096	sf3a1	96	80.191	ENSMAUG00000020317	Sf3a1	94	80.464	Mesocricetus_auratus
ENSPMGG00000023096	sf3a1	100	83.901	ENSMICG00000010038	SF3A1	96	84.162	Microcebus_murinus
ENSPMGG00000023096	sf3a1	100	83.508	ENSMOCG00000008438	Sf3a1	96	84.293	Microtus_ochrogaster
ENSPMGG00000023096	sf3a1	100	88.289	ENSMMOG00000015588	sf3a1	97	86.711	Mola_mola
ENSPMGG00000023096	sf3a1	100	83.879	ENSMODG00000009270	SF3A1	96	84.031	Monodelphis_domestica
ENSPMGG00000023096	sf3a1	100	90.183	ENSMALG00000000148	sf3a1	99	88.467	Monopterus_albus
ENSPMGG00000023096	sf3a1	99	84.321	MGP_CAROLIEiJ_G0016029	Sf3a1	96	84.585	Mus_caroli
ENSPMGG00000023096	sf3a1	99	84.321	ENSMUSG00000002129	Sf3a1	96	84.585	Mus_musculus
ENSPMGG00000023096	sf3a1	99	84.190	MGP_PahariEiJ_G0016862	Sf3a1	96	84.453	Mus_pahari
ENSPMGG00000023096	sf3a1	99	84.321	MGP_SPRETEiJ_G0016870	Sf3a1	96	84.585	Mus_spretus
ENSPMGG00000023096	sf3a1	100	84.162	ENSMPUG00000013144	SF3A1	96	84.162	Mustela_putorius_furo
ENSPMGG00000023096	sf3a1	100	84.293	ENSMLUG00000002139	SF3A1	96	84.293	Myotis_lucifugus
ENSPMGG00000023096	sf3a1	100	83.770	ENSNGAG00000016977	Sf3a1	96	84.162	Nannospalax_galili
ENSPMGG00000023096	sf3a1	100	91.612	ENSNBRG00000016642	sf3a1	97	92.267	Neolamprologus_brichardi
ENSPMGG00000023096	sf3a1	100	84.162	ENSNLEG00000003686	SF3A1	96	84.424	Nomascus_leucogenys
ENSPMGG00000023096	sf3a1	96	75.890	ENSMEUG00000008741	SF3A1	96	74.760	Notamacropus_eugenii
ENSPMGG00000023096	sf3a1	100	84.424	ENSOPRG00000016636	SF3A1	96	84.424	Ochotona_princeps
ENSPMGG00000023096	sf3a1	100	84.293	ENSODEG00000002571	SF3A1	96	84.555	Octodon_degus
ENSPMGG00000023096	sf3a1	100	91.754	ENSONIG00000010848	sf3a1	97	91.754	Oreochromis_niloticus
ENSPMGG00000023096	sf3a1	100	84.031	ENSOCUG00000007633	SF3A1	96	84.031	Oryctolagus_cuniculus
ENSPMGG00000023096	sf3a1	96	89.056	ENSORLG00000013050	sf3a1	97	88.509	Oryzias_latipes
ENSPMGG00000023096	sf3a1	99	87.088	ENSORLG00020003236	sf3a1	94	85.695	Oryzias_latipes_hni
ENSPMGG00000023096	sf3a1	100	88.743	ENSORLG00015017411	sf3a1	97	88.482	Oryzias_latipes_hsok
ENSPMGG00000023096	sf3a1	100	89.398	ENSOMEG00000013362	sf3a1	97	88.613	Oryzias_melastigma
ENSPMGG00000023096	sf3a1	100	83.901	ENSOGAG00000012931	SF3A1	96	84.162	Otolemur_garnettii
ENSPMGG00000023096	sf3a1	100	83.333	ENSOARG00000006849	SF3A1	96	83.706	Ovis_aries
ENSPMGG00000023096	sf3a1	100	82.637	ENSPPAG00000041790	SF3A1	96	82.794	Pan_paniscus
ENSPMGG00000023096	sf3a1	100	84.162	ENSPPRG00000004391	SF3A1	96	84.162	Panthera_pardus
ENSPMGG00000023096	sf3a1	100	84.031	ENSPTIG00000000844	SF3A1	99	84.031	Panthera_tigris_altaica
ENSPMGG00000023096	sf3a1	100	84.555	ENSPTRG00000014240	SF3A1	96	84.424	Pan_troglodytes
ENSPMGG00000023096	sf3a1	100	84.162	ENSPANG00000020772	SF3A1	96	84.424	Papio_anubis
ENSPMGG00000023096	sf3a1	85	90.110	ENSPSIG00000012803	SF3A1	98	90.110	Pelodiscus_sinensis
ENSPMGG00000023096	sf3a1	99	83.794	ENSPEMG00000009494	Sf3a1	96	84.293	Peromyscus_maniculatus_bairdii
ENSPMGG00000023096	sf3a1	67	79.961	ENSPMAG00000007139	-	87	80.273	Petromyzon_marinus
ENSPMGG00000023096	sf3a1	100	83.748	ENSPCIG00000022692	SF3A1	96	83.901	Phascolarctos_cinereus
ENSPMGG00000023096	sf3a1	97	82.999	ENSPFOG00000016768	sf3a1	95	81.267	Poecilia_formosa
ENSPMGG00000023096	sf3a1	100	90.980	ENSPLAG00000017268	sf3a1	97	89.935	Poecilia_latipinna
ENSPMGG00000023096	sf3a1	87	91.088	ENSPMEG00000019811	sf3a1	97	90.015	Poecilia_mexicana
ENSPMGG00000023096	sf3a1	100	90.850	ENSPREG00000010347	sf3a1	97	89.935	Poecilia_reticulata
ENSPMGG00000023096	sf3a1	100	84.162	ENSPPYG00000011707	SF3A1	96	84.424	Pongo_abelii
ENSPMGG00000023096	sf3a1	60	84.298	ENSPCAG00000003266	SF3A1	56	83.884	Procavia_capensis
ENSPMGG00000023096	sf3a1	100	84.162	ENSPCOG00000026630	SF3A1	96	84.162	Propithecus_coquereli
ENSPMGG00000023096	sf3a1	98	83.780	ENSPVAG00000017719	SF3A1	94	83.780	Pteropus_vampyrus
ENSPMGG00000023096	sf3a1	100	91.612	ENSPNYG00000018706	sf3a1	97	92.267	Pundamilia_nyererei
ENSPMGG00000023096	sf3a1	100	85.938	ENSPNAG00000003721	sf3a1	98	85.156	Pygocentrus_nattereri
ENSPMGG00000023096	sf3a1	100	83.901	ENSRNOG00000005218	Sf3a1	96	84.162	Rattus_norvegicus
ENSPMGG00000023096	sf3a1	100	84.162	ENSRBIG00000032167	SF3A1	96	84.424	Rhinopithecus_bieti
ENSPMGG00000023096	sf3a1	100	84.162	ENSRROG00000044908	SF3A1	96	84.424	Rhinopithecus_roxellana
ENSPMGG00000023096	sf3a1	96	83.470	ENSSBOG00000021960	SF3A1	98	83.808	Saimiri_boliviensis_boliviensis
ENSPMGG00000023096	sf3a1	100	81.127	ENSSHAG00000003666	SF3A1	97	81.545	Sarcophilus_harrisii
ENSPMGG00000023096	sf3a1	100	86.866	ENSSFOG00015004579	sf3a1	97	85.956	Scleropages_formosus
ENSPMGG00000023096	sf3a1	100	89.474	ENSSMAG00000004275	sf3a1	97	87.763	Scophthalmus_maximus
ENSPMGG00000023096	sf3a1	100	90.969	ENSSDUG00000022219	sf3a1	97	89.398	Seriola_dumerili
ENSPMGG00000023096	sf3a1	100	90.969	ENSSLDG00000012642	sf3a1	97	89.398	Seriola_lalandi_dorsalis
ENSPMGG00000023096	sf3a1	100	81.414	ENSSARG00000005960	SF3A1	99	81.021	Sorex_araneus
ENSPMGG00000023096	sf3a1	99	83.572	ENSSPUG00000018863	SF3A1	97	82.817	Sphenodon_punctatus
ENSPMGG00000023096	sf3a1	100	91.623	ENSSPAG00000011856	sf3a1	97	90.838	Stegastes_partitus
ENSPMGG00000023096	sf3a1	100	84.293	ENSSSCG00000010002	SF3A1	96	84.293	Sus_scrofa
ENSPMGG00000023096	sf3a1	99	84.148	ENSTGUG00000010547	SF3A1	99	83.943	Taeniopygia_guttata
ENSPMGG00000023096	sf3a1	79	89.465	ENSTRUG00000006118	sf3a1	97	86.614	Takifugu_rubripes
ENSPMGG00000023096	sf3a1	64	86.194	ENSTNIG00000005713	sf3a1	88	89.908	Tetraodon_nigroviridis
ENSPMGG00000023096	sf3a1	100	77.880	ENSTBEG00000012771	SF3A1	96	77.880	Tupaia_belangeri
ENSPMGG00000023096	sf3a1	100	84.183	ENSTTRG00000001535	SF3A1	96	84.052	Tursiops_truncatus
ENSPMGG00000023096	sf3a1	99	83.245	ENSUAMG00000006750	SF3A1	95	83.245	Ursus_americanus
ENSPMGG00000023096	sf3a1	100	84.280	ENSUMAG00000016665	SF3A1	98	83.752	Ursus_maritimus
ENSPMGG00000023096	sf3a1	100	84.031	ENSVVUG00000003075	SF3A1	96	84.031	Vulpes_vulpes
ENSPMGG00000023096	sf3a1	99	78.836	ENSXETG00000016144	sf3a1	87	90.045	Xenopus_tropicalis
ENSPMGG00000023096	sf3a1	100	90.564	ENSXCOG00000015653	sf3a1	97	88.598	Xiphophorus_couchianus
ENSPMGG00000023096	sf3a1	100	90.826	ENSXMAG00000002753	sf3a1	97	88.860	Xiphophorus_maculatus