EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000023117 (Gene tree)
Gene ID: -
Gene Symbol: pabpc1l
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Plus strand
Length: 5756 bases
Position: chrKN465746.1:315171-320926
Accession: ZDB-GENE-030131-5836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000028723	RRM_1	PF00076.22	2.4e-49	1	2
ENSPMGP00000028723	RRM_1	PF00076.22	2.4e-49	2	2
ENSPMGP00000028719	RRM_1	PF00076.22	2.7e-28	1	2
ENSPMGP00000028719	RRM_1	PF00076.22	2.7e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000030578	-	678	-	ENSPMGP00000028723	225 (aa)	-	-
ENSPMGT00000030574	-	435	-	ENSPMGP00000028719	144 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000023117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000023117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000023117	pabpc1l	92	86.364	ENSG00000101104	PABPC1L	98	86.364	Homo_sapiens
ENSPMGG00000023117	pabpc1l	97	91.628	ENSAPOG00000010842	pabpc1l	61	91.628	Acanthochromis_polyacanthus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSAMEG00000004099	PABPC1L	61	86.364	Ailuropoda_melanoleuca
ENSPMGG00000023117	pabpc1l	99	94.815	ENSACIG00000021004	-	72	93.636	Amphilophus_citrinellus
ENSPMGG00000023117	pabpc1l	97	91.628	ENSAOCG00000006167	-	60	91.628	Amphiprion_ocellaris
ENSPMGG00000023117	pabpc1l	97	91.628	ENSAPEG00000010558	-	92	93.939	Amphiprion_percula
ENSPMGG00000023117	pabpc1l	99	96.212	ENSATEG00000007428	pabpc1l	63	96.212	Anabas_testudineus
ENSPMGG00000023117	pabpc1l	93	83.010	ENSAPLG00000008415	PABPC1L	61	86.047	Anas_platyrhynchos
ENSPMGG00000023117	pabpc1l	97	84.651	ENSACAG00000011841	PABPC1L	61	89.394	Anolis_carolinensis
ENSPMGG00000023117	pabpc1l	92	85.606	ENSANAG00000026826	PABPC1L	63	85.606	Aotus_nancymaae
ENSPMGG00000023117	pabpc1l	97	94.419	ENSACLG00000024791	pabpc1l	62	96.212	Astatotilapia_calliptera
ENSPMGG00000023117	pabpc1l	92	94.697	ENSAMXG00000013552	pabpc1l	60	88.837	Astyanax_mexicanus
ENSPMGG00000023117	pabpc1l	96	86.905	ENSBTAG00000055300	-	100	86.905	Bos_taurus
ENSPMGG00000023117	pabpc1l	81	40.909	ENSBTAG00000016849	PABPC1L	55	40.909	Bos_taurus
ENSPMGG00000023117	pabpc1l	92	76.296	ENSCJAG00000038506	-	100	79.885	Callithrix_jacchus
ENSPMGG00000023117	pabpc1l	92	85.606	ENSCJAG00000017628	PABPC1L	63	85.606	Callithrix_jacchus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSCAFG00000009573	PABPC1L	60	86.364	Canis_familiaris
ENSPMGG00000023117	pabpc1l	92	86.364	ENSCAFG00020013828	PABPC1L	63	86.364	Canis_lupus_dingo
ENSPMGG00000023117	pabpc1l	92	87.121	ENSCHIG00000025759	PABPC1L	60	87.121	Capra_hircus
ENSPMGG00000023117	pabpc1l	92	84.848	ENSTSYG00000006645	PABPC1L	63	84.848	Carlito_syrichta
ENSPMGG00000023117	pabpc1l	88	80.645	ENSCAPG00000014519	PABPC1L	58	71.724	Cavia_aperea
ENSPMGG00000023117	pabpc1l	92	81.061	ENSCPOG00000013633	PABPC1L	62	74.884	Cavia_porcellus
ENSPMGG00000023117	pabpc1l	92	84.848	ENSCCAG00000023338	PABPC1L	61	77.209	Cebus_capucinus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSCATG00000034065	PABPC1L	61	79.070	Cercocebus_atys
ENSPMGG00000023117	pabpc1l	92	79.545	ENSCLAG00000005298	PABPC1L	61	73.023	Chinchilla_lanigera
ENSPMGG00000023117	pabpc1l	92	86.364	ENSCSAG00000014242	PABPC1L	61	78.605	Chlorocebus_sabaeus
ENSPMGG00000023117	pabpc1l	97	83.721	ENSCPBG00000017755	-	87	88.636	Chrysemys_picta_bellii
ENSPMGG00000023117	pabpc1l	58	85.542	ENSCPBG00000007810	-	85	77.027	Chrysemys_picta_bellii
ENSPMGG00000023117	pabpc1l	99	85.821	ENSCSAVG00000004246	-	58	85.821	Ciona_savignyi
ENSPMGG00000023117	pabpc1l	99	84.211	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSPMGG00000023117	pabpc1l	92	86.364	ENSCANG00000037530	PABPC1L	54	86.364	Colobus_angolensis_palliatus
ENSPMGG00000023117	pabpc1l	97	72.558	ENSCGRG00001021938	Pabpc1l	62	72.558	Cricetulus_griseus_chok1gshd
ENSPMGG00000023117	pabpc1l	97	72.558	ENSCGRG00000007946	Pabpc1l	62	72.558	Cricetulus_griseus_crigri
ENSPMGG00000023117	pabpc1l	98	93.846	ENSCSEG00000021295	pabpc1l	69	93.846	Cynoglossus_semilaevis
ENSPMGG00000023117	pabpc1l	96	96.923	ENSCVAG00000015943	-	86	96.923	Cyprinodon_variegatus
ENSPMGG00000023117	pabpc1l	96	94.615	ENSDARG00000002597	pabpc1l	88	94.615	Danio_rerio
ENSPMGG00000023117	pabpc1l	92	85.606	ENSDNOG00000048450	PABPC1L	63	85.606	Dasypus_novemcinctus
ENSPMGG00000023117	pabpc1l	92	81.818	ENSDORG00000001067	Pabpc1l	63	81.818	Dipodomys_ordii
ENSPMGG00000023117	pabpc1l	96	84.524	ENSEASG00005023408	-	100	84.524	Equus_asinus_asinus
ENSPMGG00000023117	pabpc1l	56	39.080	ENSEASG00005023407	-	50	39.080	Equus_asinus_asinus
ENSPMGG00000023117	pabpc1l	82	39.252	ENSECAG00000040139	-	58	39.252	Equus_caballus
ENSPMGG00000023117	pabpc1l	91	83.969	ENSEEUG00000005978	PABPC1L	63	83.969	Erinaceus_europaeus
ENSPMGG00000023117	pabpc1l	99	94.697	ENSELUG00000001811	pabpc1l	69	94.697	Esox_lucius
ENSPMGG00000023117	pabpc1l	92	86.364	ENSFCAG00000011692	PABPC1L	63	86.364	Felis_catus
ENSPMGG00000023117	pabpc1l	97	83.721	ENSFALG00000005372	PABPC1L	65	87.121	Ficedula_albicollis
ENSPMGG00000023117	pabpc1l	92	81.061	ENSFDAG00000008291	PABPC1L	63	74.419	Fukomys_damarensis
ENSPMGG00000023117	pabpc1l	97	93.953	ENSFHEG00000003398	pabpc1l	63	96.212	Fundulus_heteroclitus
ENSPMGG00000023117	pabpc1l	99	91.667	ENSGMOG00000004437	pabpc1l	62	91.667	Gadus_morhua
ENSPMGG00000023117	pabpc1l	97	83.256	ENSGALG00000004123	PABPC1L	92	87.121	Gallus_gallus
ENSPMGG00000023117	pabpc1l	92	96.970	ENSGAFG00000021057	pabpc1l	51	96.970	Gambusia_affinis
ENSPMGG00000023117	pabpc1l	99	96.212	ENSGACG00000002792	pabpc1l	62	96.212	Gasterosteus_aculeatus
ENSPMGG00000023117	pabpc1l	97	84.186	ENSGAGG00000000589	PABPC1L	70	88.636	Gopherus_agassizii
ENSPMGG00000023117	pabpc1l	92	86.364	ENSGGOG00000004584	PABPC1L	61	78.605	Gorilla_gorilla
ENSPMGG00000023117	pabpc1l	97	94.419	ENSHBUG00000006134	pabpc1l	68	96.212	Haplochromis_burtoni
ENSPMGG00000023117	pabpc1l	92	81.061	ENSHGLG00000008434	PABPC1L	61	74.419	Heterocephalus_glaber_female
ENSPMGG00000023117	pabpc1l	96	85.955	ENSHGLG00100019506	-	100	85.955	Heterocephalus_glaber_male
ENSPMGG00000023117	pabpc1l	92	81.061	ENSHGLG00100012151	PABPC1L	61	74.419	Heterocephalus_glaber_male
ENSPMGG00000023117	pabpc1l	97	91.628	ENSHCOG00000009270	pabpc1l	68	95.455	Hippocampus_comes
ENSPMGG00000023117	pabpc1l	91	63.218	ENSIPUG00000006760	-	87	63.218	Ictalurus_punctatus
ENSPMGG00000023117	pabpc1l	91	63.218	ENSIPUG00000006780	-	84	63.218	Ictalurus_punctatus
ENSPMGG00000023117	pabpc1l	90	59.231	ENSIPUG00000005537	-	100	60.000	Ictalurus_punctatus
ENSPMGG00000023117	pabpc1l	97	89.767	ENSIPUG00000012602	pabpc1l	65	89.767	Ictalurus_punctatus
ENSPMGG00000023117	pabpc1l	92	82.576	ENSSTOG00000003739	PABPC1L	61	76.744	Ictidomys_tridecemlineatus
ENSPMGG00000023117	pabpc1l	96	43.701	ENSJJAG00000022406	Pabpc1l	56	43.701	Jaculus_jaculus
ENSPMGG00000023117	pabpc1l	97	93.488	ENSKMAG00000016847	pabpc1l	65	95.455	Kryptolebias_marmoratus
ENSPMGG00000023117	pabpc1l	99	94.697	ENSLBEG00000010084	pabpc1l	64	94.697	Labrus_bergylta
ENSPMGG00000023117	pabpc1l	99	88.636	ENSLACG00000005762	PABPC1L	70	88.636	Latimeria_chalumnae
ENSPMGG00000023117	pabpc1l	94	96.212	ENSLOCG00000007519	pabpc1l	61	96.212	Lepisosteus_oculatus
ENSPMGG00000023117	pabpc1l	92	84.848	ENSLAFG00000003553	PABPC1L	62	84.848	Loxodonta_africana
ENSPMGG00000023117	pabpc1l	92	86.364	ENSMFAG00000040365	PABPC1L	61	79.070	Macaca_fascicularis
ENSPMGG00000023117	pabpc1l	92	86.364	ENSMNEG00000032298	PABPC1L	61	79.070	Macaca_nemestrina
ENSPMGG00000023117	pabpc1l	92	86.364	ENSMLEG00000043139	PABPC1L	61	79.070	Mandrillus_leucophaeus
ENSPMGG00000023117	pabpc1l	99	94.697	ENSMAMG00000011854	pabpc1l	63	94.697	Mastacembelus_armatus
ENSPMGG00000023117	pabpc1l	97	94.419	ENSMZEG00005023713	pabpc1l	62	96.212	Maylandia_zebra
ENSPMGG00000023117	pabpc1l	97	83.721	ENSMGAG00000003674	PABPC1L	62	87.121	Meleagris_gallopavo
ENSPMGG00000023117	pabpc1l	97	72.093	ENSMOCG00000013186	Pabpc1l	62	72.093	Microtus_ochrogaster
ENSPMGG00000023117	pabpc1l	99	93.333	ENSMMOG00000020574	-	99	88.194	Mola_mola
ENSPMGG00000023117	pabpc1l	92	87.121	ENSMODG00000016198	PABPC1L	64	81.860	Monodelphis_domestica
ENSPMGG00000023117	pabpc1l	99	93.333	ENSMALG00000021622	pabpc1l	64	93.333	Monopterus_albus
ENSPMGG00000023117	pabpc1l	97	72.093	MGP_CAROLIEiJ_G0024627	Pabpc1l	62	72.093	Mus_caroli
ENSPMGG00000023117	pabpc1l	97	72.093	ENSMUSG00000054582	Pabpc1l	62	72.093	Mus_musculus
ENSPMGG00000023117	pabpc1l	97	72.093	MGP_PahariEiJ_G0026071	Pabpc1l	62	72.093	Mus_pahari
ENSPMGG00000023117	pabpc1l	97	72.093	MGP_SPRETEiJ_G0025549	Pabpc1l	62	72.093	Mus_spretus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSMPUG00000017646	PABPC1L	62	86.364	Mustela_putorius_furo
ENSPMGG00000023117	pabpc1l	92	85.606	ENSMLUG00000006324	PABPC1L	61	85.606	Myotis_lucifugus
ENSPMGG00000023117	pabpc1l	97	73.023	ENSNGAG00000010458	Pabpc1l	62	73.023	Nannospalax_galili
ENSPMGG00000023117	pabpc1l	97	94.419	ENSNBRG00000016633	pabpc1l	72	95.327	Neolamprologus_brichardi
ENSPMGG00000023117	pabpc1l	91	87.597	ENSMEUG00000007905	-	62	80.000	Notamacropus_eugenii
ENSPMGG00000023117	pabpc1l	92	84.091	ENSOPRG00000011846	PABPC1L	54	84.091	Ochotona_princeps
ENSPMGG00000023117	pabpc1l	92	77.273	ENSODEG00000002920	-	96	80.000	Octodon_degus
ENSPMGG00000023117	pabpc1l	92	81.818	ENSODEG00000015482	PABPC1L	69	74.884	Octodon_degus
ENSPMGG00000023117	pabpc1l	97	94.419	ENSONIG00000017314	pabpc1l	62	96.212	Oreochromis_niloticus
ENSPMGG00000023117	pabpc1l	97	82.857	ENSOANG00000015793	-	66	82.857	Ornithorhynchus_anatinus
ENSPMGG00000023117	pabpc1l	92	84.091	ENSOCUG00000003005	PABPC1L	59	84.091	Oryctolagus_cuniculus
ENSPMGG00000023117	pabpc1l	97	93.023	ENSORLG00000010322	pabpc1l	73	93.158	Oryzias_latipes
ENSPMGG00000023117	pabpc1l	97	93.023	ENSORLG00020021193	pabpc1l	73	93.158	Oryzias_latipes_hni
ENSPMGG00000023117	pabpc1l	97	93.023	ENSORLG00015017018	pabpc1l	73	93.158	Oryzias_latipes_hsok
ENSPMGG00000023117	pabpc1l	94	92.593	ENSOMEG00000010789	pabpc1l	62	81.967	Oryzias_melastigma
ENSPMGG00000023117	pabpc1l	99	76.279	ENSOGAG00000032999	PABPC1L	62	82.576	Otolemur_garnettii
ENSPMGG00000023117	pabpc1l	92	86.364	ENSOARG00000004578	PABPC1L	63	86.364	Ovis_aries
ENSPMGG00000023117	pabpc1l	92	86.364	ENSPPAG00000039677	PABPC1L	61	79.070	Pan_paniscus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSPPRG00000019327	-	97	78.605	Panthera_pardus
ENSPMGG00000023117	pabpc1l	88	86.508	ENSPTIG00000006524	PABPC1L	63	86.508	Panthera_tigris_altaica
ENSPMGG00000023117	pabpc1l	92	86.364	ENSPTRG00000013531	PABPC1L	98	86.364	Pan_troglodytes
ENSPMGG00000023117	pabpc1l	92	86.364	ENSPANG00000018788	PABPC1L	61	79.070	Papio_anubis
ENSPMGG00000023117	pabpc1l	63	67.778	ENSPKIG00000016801	-	100	67.778	Paramormyrops_kingsleyae
ENSPMGG00000023117	pabpc1l	97	88.837	ENSPKIG00000007322	pabpc1l	62	91.667	Paramormyrops_kingsleyae
ENSPMGG00000023117	pabpc1l	96	83.206	ENSPKIG00000016810	-	94	81.343	Paramormyrops_kingsleyae
ENSPMGG00000023117	pabpc1l	97	84.186	ENSPSIG00000013289	PABPC1L	91	88.636	Pelodiscus_sinensis
ENSPMGG00000023117	pabpc1l	94	39.080	ENSPMGG00000023121	-	80	39.080	Periophthalmus_magnuspinnatus
ENSPMGG00000023117	pabpc1l	97	71.628	ENSPEMG00000020671	Pabpc1l	62	71.628	Peromyscus_maniculatus_bairdii
ENSPMGG00000023117	pabpc1l	97	94.419	ENSPFOG00000013241	pabpc1l	63	96.212	Poecilia_formosa
ENSPMGG00000023117	pabpc1l	97	94.419	ENSPLAG00000017490	-	69	96.212	Poecilia_latipinna
ENSPMGG00000023117	pabpc1l	96	97.692	ENSPLAG00000023686	-	92	97.692	Poecilia_latipinna
ENSPMGG00000023117	pabpc1l	97	94.419	ENSPMEG00000007677	pabpc1l	60	96.212	Poecilia_mexicana
ENSPMGG00000023117	pabpc1l	96	97.692	ENSPMEG00000009185	-	88	97.692	Poecilia_mexicana
ENSPMGG00000023117	pabpc1l	97	94.884	ENSPREG00000015886	pabpc1l	90	96.970	Poecilia_reticulata
ENSPMGG00000023117	pabpc1l	92	86.364	ENSPPYG00000011042	PABPC1L	61	78.605	Pongo_abelii
ENSPMGG00000023117	pabpc1l	96	85.938	ENSPCAG00000011787	-	65	85.938	Procavia_capensis
ENSPMGG00000023117	pabpc1l	99	76.744	ENSPCOG00000020630	PABPC1L	63	82.576	Propithecus_coquereli
ENSPMGG00000023117	pabpc1l	92	86.364	ENSPVAG00000012663	PABPC1L	54	86.364	Pteropus_vampyrus
ENSPMGG00000023117	pabpc1l	97	94.419	ENSPNYG00000004101	pabpc1l	72	95.327	Pundamilia_nyererei
ENSPMGG00000023117	pabpc1l	94	94.697	ENSPNAG00000021248	pabpc1l	56	94.697	Pygocentrus_nattereri
ENSPMGG00000023117	pabpc1l	97	71.163	ENSRNOG00000012750	Pabpc1l	62	71.163	Rattus_norvegicus
ENSPMGG00000023117	pabpc1l	92	85.606	ENSRBIG00000035381	PABPC1L	61	78.605	Rhinopithecus_bieti
ENSPMGG00000023117	pabpc1l	92	85.606	ENSRROG00000044498	PABPC1L	61	78.140	Rhinopithecus_roxellana
ENSPMGG00000023117	pabpc1l	92	85.606	ENSSBOG00000009532	-	63	85.606	Saimiri_boliviensis_boliviensis
ENSPMGG00000023117	pabpc1l	94	71.264	ENSSHAG00000011446	PABPC1L	51	71.264	Sarcophilus_harrisii
ENSPMGG00000023117	pabpc1l	97	90.698	ENSSFOG00015017304	pabpc1l	62	94.697	Scleropages_formosus
ENSPMGG00000023117	pabpc1l	99	97.727	ENSSMAG00000010516	pabpc1l	93	99.225	Scophthalmus_maximus
ENSPMGG00000023117	pabpc1l	99	96.212	ENSSDUG00000014743	pabpc1l	62	96.212	Seriola_dumerili
ENSPMGG00000023117	pabpc1l	99	95.455	ENSSLDG00000006981	pabpc1l	91	89.140	Seriola_lalandi_dorsalis
ENSPMGG00000023117	pabpc1l	97	84.651	ENSSPUG00000004233	PABPC1L	61	89.394	Sphenodon_punctatus
ENSPMGG00000023117	pabpc1l	97	92.093	ENSSPAG00000017137	pabpc1l	67	92.093	Stegastes_partitus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSSSCG00000007382	PABPC1L	64	86.364	Sus_scrofa
ENSPMGG00000023117	pabpc1l	97	84.651	ENSTGUG00000005114	PABPC1L	63	88.636	Taeniopygia_guttata
ENSPMGG00000023117	pabpc1l	99	95.556	ENSTRUG00000011085	pabpc1l	63	95.556	Takifugu_rubripes
ENSPMGG00000023117	pabpc1l	99	86.765	ENSTNIG00000017903	pabpc1l	61	86.765	Tetraodon_nigroviridis
ENSPMGG00000023117	pabpc1l	92	87.121	ENSTTRG00000007618	PABPC1L	65	87.121	Tursiops_truncatus
ENSPMGG00000023117	pabpc1l	92	86.364	ENSUAMG00000017682	PABPC1L	66	86.364	Ursus_americanus
ENSPMGG00000023117	pabpc1l	94	72.611	ENSUMAG00000025436	PABPC1L	84	78.378	Ursus_maritimus
ENSPMGG00000023117	pabpc1l	98	87.121	ENSVVUG00000018939	PABPC1L	64	87.121	Vulpes_vulpes
ENSPMGG00000023117	pabpc1l	97	85.581	ENSXETG00000022831	pabpc1l	60	85.581	Xenopus_tropicalis
ENSPMGG00000023117	pabpc1l	97	94.884	ENSXCOG00000005459	pabpc1l	99	92.908	Xiphophorus_couchianus
ENSPMGG00000023117	pabpc1l	97	94.884	ENSXMAG00000017135	pabpc1l	69	96.970	Xiphophorus_maculatus