EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000000524 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 28108 bases
Position: chrKV575700.1:349399-377506
Accession: 108441598
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000023324	RRM_1	PF00076.22	7.4e-13	1	2
ENSPNAP00000023324	RRM_1	PF00076.22	7.4e-13	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000012921	-	1548	XM_017721215	ENSPNAP00000023324	515 (aa)	XP_017576704	-

Gene Model

Click here to download ENSPNAG00000000524's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000000524's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000000524	rnpc3	89	55.534	ENSG00000185946	RNPC3	95	55.138	Homo_sapiens
ENSPNAG00000000524	rnpc3	92	58.835	ENSAPOG00000017371	rnpc3	99	58.835	Acanthochromis_polyacanthus
ENSPNAG00000000524	rnpc3	89	55.248	ENSAMEG00000001694	RNPC3	95	54.653	Ailuropoda_melanoleuca
ENSPNAG00000000524	rnpc3	91	59.961	ENSACIG00000021043	rnpc3	99	60.158	Amphilophus_citrinellus
ENSPNAG00000000524	rnpc3	93	57.605	ENSAOCG00000014052	rnpc3	99	57.795	Amphiprion_ocellaris
ENSPNAG00000000524	rnpc3	93	57.605	ENSAPEG00000008739	rnpc3	99	57.795	Amphiprion_percula
ENSPNAG00000000524	rnpc3	92	56.844	ENSATEG00000021263	rnpc3	99	57.034	Anabas_testudineus
ENSPNAG00000000524	rnpc3	88	55.236	ENSACAG00000002029	RNPC3	96	53.119	Anolis_carolinensis
ENSPNAG00000000524	rnpc3	90	54.795	ENSANAG00000019950	RNPC3	96	54.403	Aotus_nancymaae
ENSPNAG00000000524	rnpc3	92	58.880	ENSACLG00000014702	rnpc3	99	58.382	Astatotilapia_calliptera
ENSPNAG00000000524	rnpc3	92	74.615	ENSAMXG00000033372	rnpc3	100	74.615	Astyanax_mexicanus
ENSPNAG00000000524	rnpc3	90	53.801	ENSBTAG00000019091	RNPC3	97	53.606	Bos_taurus
ENSPNAG00000000524	rnpc3	90	51.838	ENSCJAG00000035686	RNPC3	96	53.937	Callithrix_jacchus
ENSPNAG00000000524	rnpc3	89	54.960	ENSCAFG00000019972	RNPC3	95	54.762	Canis_familiaris
ENSPNAG00000000524	rnpc3	89	54.960	ENSCAFG00020011300	RNPC3	95	54.762	Canis_lupus_dingo
ENSPNAG00000000524	rnpc3	89	53.725	ENSCHIG00000020361	RNPC3	95	54.365	Capra_hircus
ENSPNAG00000000524	rnpc3	88	55.467	ENSTSYG00000030256	RNPC3	95	55.336	Carlito_syrichta
ENSPNAG00000000524	rnpc3	77	47.738	ENSCAPG00000013600	RNPC3	97	46.774	Cavia_aperea
ENSPNAG00000000524	rnpc3	79	60.256	ENSCPOG00000031638	RNPC3	95	53.906	Cavia_porcellus
ENSPNAG00000000524	rnpc3	90	55.315	ENSCCAG00000024301	RNPC3	96	54.280	Cebus_capucinus
ENSPNAG00000000524	rnpc3	89	55.424	ENSCATG00000002086	RNPC3	95	55.030	Cercocebus_atys
ENSPNAG00000000524	rnpc3	89	46.405	ENSCATG00000035930	-	95	46.623	Cercocebus_atys
ENSPNAG00000000524	rnpc3	76	63.084	ENSCLAG00000005169	RNPC3	95	53.968	Chinchilla_lanigera
ENSPNAG00000000524	rnpc3	89	55.227	ENSCSAG00000001519	RNPC3	95	54.832	Chlorocebus_sabaeus
ENSPNAG00000000524	rnpc3	89	54.234	ENSCPBG00000028311	RNPC3	95	53.479	Chrysemys_picta_bellii
ENSPNAG00000000524	rnpc3	88	55.159	ENSCANG00000031444	RNPC3	95	55.030	Colobus_angolensis_palliatus
ENSPNAG00000000524	rnpc3	89	53.953	ENSDNOG00000044555	-	95	53.755	Dasypus_novemcinctus
ENSPNAG00000000524	rnpc3	89	54.545	ENSDNOG00000047498	-	95	54.348	Dasypus_novemcinctus
ENSPNAG00000000524	rnpc3	90	54.314	ENSDORG00000027343	Rnpc3	96	53.740	Dipodomys_ordii
ENSPNAG00000000524	rnpc3	74	55.300	ENSEBUG00000002068	rnpc3	76	56.682	Eptatretus_burgeri
ENSPNAG00000000524	rnpc3	89	54.871	ENSEASG00005015957	RNPC3	95	54.183	Equus_asinus_asinus
ENSPNAG00000000524	rnpc3	89	54.545	ENSECAG00000021148	RNPC3	95	53.861	Equus_caballus
ENSPNAG00000000524	rnpc3	92	59.774	ENSELUG00000002264	rnpc3	99	59.023	Esox_lucius
ENSPNAG00000000524	rnpc3	89	55.268	ENSFCAG00000024312	RNPC3	96	54.635	Felis_catus
ENSPNAG00000000524	rnpc3	81	52.444	ENSFALG00000002580	RNPC3	99	61.165	Ficedula_albicollis
ENSPNAG00000000524	rnpc3	75	63.084	ENSFDAG00000019948	RNPC3	95	54.563	Fukomys_damarensis
ENSPNAG00000000524	rnpc3	92	55.750	ENSGMOG00000019213	rnpc3	99	55.992	Gadus_morhua
ENSPNAG00000000524	rnpc3	90	52.485	ENSGALG00000005162	RNPC3	89	49.315	Gallus_gallus
ENSPNAG00000000524	rnpc3	92	56.008	ENSGACG00000002048	rnpc3	99	54.943	Gasterosteus_aculeatus
ENSPNAG00000000524	rnpc3	90	52.767	ENSGAGG00000008438	RNPC3	95	53.162	Gopherus_agassizii
ENSPNAG00000000524	rnpc3	76	68.750	ENSHBUG00000015966	rnpc3	85	68.750	Haplochromis_burtoni
ENSPNAG00000000524	rnpc3	76	63.551	ENSHGLG00000001708	RNPC3	95	53.906	Heterocephalus_glaber_female
ENSPNAG00000000524	rnpc3	76	63.551	ENSHGLG00100003005	RNPC3	95	53.906	Heterocephalus_glaber_male
ENSPNAG00000000524	rnpc3	89	56.262	ENSHCOG00000017135	rnpc3	98	56.487	Hippocampus_comes
ENSPNAG00000000524	rnpc3	92	67.181	ENSIPUG00000002916	rnpc3	99	67.181	Ictalurus_punctatus
ENSPNAG00000000524	rnpc3	89	54.365	ENSSTOG00000025020	RNPC3	95	53.968	Ictidomys_tridecemlineatus
ENSPNAG00000000524	rnpc3	88	54.957	ENSJJAG00000010203	Rnpc3	95	55.031	Jaculus_jaculus
ENSPNAG00000000524	rnpc3	89	55.758	ENSLAFG00000032342	RNPC3	98	54.207	Loxodonta_africana
ENSPNAG00000000524	rnpc3	89	45.708	ENSMFAG00000002917	-	94	45.708	Macaca_fascicularis
ENSPNAG00000000524	rnpc3	89	55.424	ENSMFAG00000002004	RNPC3	95	55.030	Macaca_fascicularis
ENSPNAG00000000524	rnpc3	89	45.217	ENSMMUG00000002098	-	94	47.629	Macaca_mulatta
ENSPNAG00000000524	rnpc3	89	55.424	ENSMMUG00000018039	RNPC3	95	54.960	Macaca_mulatta
ENSPNAG00000000524	rnpc3	89	52.071	ENSMNEG00000033950	RNPC3	95	51.677	Macaca_nemestrina
ENSPNAG00000000524	rnpc3	89	55.424	ENSMLEG00000033628	RNPC3	95	55.030	Mandrillus_leucophaeus
ENSPNAG00000000524	rnpc3	89	42.292	ENSMLEG00000034644	-	95	43.469	Mandrillus_leucophaeus
ENSPNAG00000000524	rnpc3	92	52.713	ENSMAMG00000007496	rnpc3	99	50.662	Mastacembelus_armatus
ENSPNAG00000000524	rnpc3	92	57.627	ENSMZEG00005020233	rnpc3	99	58.095	Maylandia_zebra
ENSPNAG00000000524	rnpc3	81	51.627	ENSMGAG00000006381	RNPC3	99	47.974	Meleagris_gallopavo
ENSPNAG00000000524	rnpc3	76	60.280	ENSMAUG00000001358	Rnpc3	95	52.250	Mesocricetus_auratus
ENSPNAG00000000524	rnpc3	90	55.273	ENSMICG00000029591	RNPC3	95	55.273	Microcebus_murinus
ENSPNAG00000000524	rnpc3	76	61.215	ENSMOCG00000013423	Rnpc3	95	51.859	Microtus_ochrogaster
ENSPNAG00000000524	rnpc3	92	56.855	ENSMMOG00000005309	rnpc3	99	57.258	Mola_mola
ENSPNAG00000000524	rnpc3	77	60.092	ENSMODG00000002946	RNPC3	95	51.093	Monodelphis_domestica
ENSPNAG00000000524	rnpc3	91	54.070	ENSMALG00000015471	rnpc3	99	52.820	Monopterus_albus
ENSPNAG00000000524	rnpc3	89	55.268	ENSMPUG00000007349	RNPC3	95	54.871	Mustela_putorius_furo
ENSPNAG00000000524	rnpc3	79	62.393	ENSNGAG00000010939	Rnpc3	95	54.102	Nannospalax_galili
ENSPNAG00000000524	rnpc3	92	58.880	ENSNBRG00000012196	rnpc3	98	57.905	Neolamprologus_brichardi
ENSPNAG00000000524	rnpc3	89	55.336	ENSNLEG00000012013	RNPC3	95	54.941	Nomascus_leucogenys
ENSPNAG00000000524	rnpc3	89	55.070	ENSODEG00000007612	RNPC3	96	54.331	Octodon_degus
ENSPNAG00000000524	rnpc3	92	57.663	ENSONIG00000004770	rnpc3	100	58.648	Oreochromis_niloticus
ENSPNAG00000000524	rnpc3	85	54.071	ENSOANG00000008220	RNPC3	100	54.071	Ornithorhynchus_anatinus
ENSPNAG00000000524	rnpc3	89	53.125	ENSOCUG00000004016	RNPC3	95	53.846	Oryctolagus_cuniculus
ENSPNAG00000000524	rnpc3	90	55.294	ENSOGAG00000026182	RNPC3	96	54.971	Otolemur_garnettii
ENSPNAG00000000524	rnpc3	89	53.725	ENSOARG00000018719	RNPC3	95	54.365	Ovis_aries
ENSPNAG00000000524	rnpc3	89	55.315	ENSPPAG00000037459	RNPC3	95	54.921	Pan_paniscus
ENSPNAG00000000524	rnpc3	89	55.467	ENSPPRG00000020246	RNPC3	96	54.832	Panthera_pardus
ENSPNAG00000000524	rnpc3	89	55.467	ENSPTIG00000009887	RNPC3	97	55.268	Panthera_tigris_altaica
ENSPNAG00000000524	rnpc3	89	55.424	ENSPTRG00000033902	RNPC3	95	55.030	Pan_troglodytes
ENSPNAG00000000524	rnpc3	89	47.182	ENSPANG00000029957	-	96	47.182	Papio_anubis
ENSPNAG00000000524	rnpc3	89	55.534	ENSPANG00000012137	RNPC3	95	55.138	Papio_anubis
ENSPNAG00000000524	rnpc3	58	53.659	ENSPSIG00000007396	RNPC3	99	53.049	Pelodiscus_sinensis
ENSPNAG00000000524	rnpc3	69	59.346	ENSPEMG00000020112	Rnpc3	99	50.323	Peromyscus_maniculatus_bairdii
ENSPNAG00000000524	rnpc3	76	51.802	ENSPMAG00000003778	rnpc3	76	51.802	Petromyzon_marinus
ENSPNAG00000000524	rnpc3	90	51.378	ENSPCIG00000004415	-	95	52.883	Phascolarctos_cinereus
ENSPNAG00000000524	rnpc3	60	58.209	ENSPPYG00000001102	RNPC3	94	50.943	Pongo_abelii
ENSPNAG00000000524	rnpc3	92	58.880	ENSPNYG00000020603	rnpc3	99	58.382	Pundamilia_nyererei
ENSPNAG00000000524	rnpc3	89	51.181	ENSRBIG00000043897	RNPC3	95	50.787	Rhinopithecus_bieti
ENSPNAG00000000524	rnpc3	89	55.424	ENSRROG00000032334	RNPC3	95	55.030	Rhinopithecus_roxellana
ENSPNAG00000000524	rnpc3	90	55.294	ENSSBOG00000024473	RNPC3	96	54.902	Saimiri_boliviensis_boliviensis
ENSPNAG00000000524	rnpc3	90	51.690	ENSSHAG00000011859	RNPC3	95	52.174	Sarcophilus_harrisii
ENSPNAG00000000524	rnpc3	92	60.501	ENSSFOG00015013055	rnpc3	99	61.508	Scleropages_formosus
ENSPNAG00000000524	rnpc3	92	55.513	ENSSMAG00000020346	rnpc3	99	57.306	Scophthalmus_maximus
ENSPNAG00000000524	rnpc3	92	58.555	ENSSDUG00000006600	rnpc3	99	58.015	Seriola_dumerili
ENSPNAG00000000524	rnpc3	92	57.824	ENSSLDG00000007979	rnpc3	99	57.824	Seriola_lalandi_dorsalis
ENSPNAG00000000524	rnpc3	89	53.968	ENSSSCG00000037254	RNPC3	95	53.678	Sus_scrofa
ENSPNAG00000000524	rnpc3	81	53.452	ENSTGUG00000004795	-	99	53.452	Taeniopygia_guttata
ENSPNAG00000000524	rnpc3	92	56.008	ENSTNIG00000018963	rnpc3	99	56.008	Tetraodon_nigroviridis
ENSPNAG00000000524	rnpc3	88	55.090	ENSUMAG00000007775	RNPC3	97	54.563	Ursus_maritimus
ENSPNAG00000000524	rnpc3	89	54.960	ENSVVUG00000000331	RNPC3	95	54.762	Vulpes_vulpes
ENSPNAG00000000524	rnpc3	95	40.437	ENSXETG00000025027	rnpc3	76	57.209	Xenopus_tropicalis