EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000000676 (Gene tree)
Gene ID: 108426473
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 25222 bases
Position: chrKV575328.1:1598298-1623519
Accession: 108426473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000001348	AARP2CN	PF08142.12	8.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000012329	-	6249	XM_017695962	ENSPNAP00000001348	1268 (aa)	XP_017551451	UPI0008142D13

Gene Model

Click here to download ENSPNAG00000000676's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000000676's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000000676	bms1	79	78.106	ENSAPOG00000002296	bms1	96	77.795	Acanthochromis_polyacanthus
ENSPNAG00000000676	bms1	97	71.059	ENSACIG00000002588	bms1	94	77.476	Amphilophus_citrinellus
ENSPNAG00000000676	bms1	88	79.421	ENSAOCG00000018088	bms1	53	77.591	Amphiprion_ocellaris
ENSPNAG00000000676	bms1	87	79.777	ENSAPEG00000014673	bms1	53	77.982	Amphiprion_percula
ENSPNAG00000000676	bms1	99	73.112	ENSATEG00000023465	bms1	99	71.595	Anabas_testudineus
ENSPNAG00000000676	bms1	97	71.002	ENSACLG00000001294	bms1	54	76.324	Astatotilapia_calliptera
ENSPNAG00000000676	bms1	80	51.478	WBGene00022021	Y61A9LA.10	94	53.826	Caenorhabditis_elegans
ENSPNAG00000000676	bms1	99	59.938	ENSCAPG00000008652	BMS1	83	71.461	Cavia_aperea
ENSPNAG00000000676	bms1	79	62.069	ENSCING00000003181	-	97	62.069	Ciona_intestinalis
ENSPNAG00000000676	bms1	68	54.824	ENSCSAVG00000004113	-	87	54.824	Ciona_savignyi
ENSPNAG00000000676	bms1	99	70.063	ENSCSEG00000002469	bms1	50	76.518	Cynoglossus_semilaevis
ENSPNAG00000000676	bms1	87	79.968	ENSCVAG00000008371	bms1	54	78.694	Cyprinodon_variegatus
ENSPNAG00000000676	bms1	99	76.675	ENSDARG00000054154	bms1	99	76.220	Danio_rerio
ENSPNAG00000000676	bms1	99	63.354	ENSDORG00000002982	Bms1	50	67.957	Dipodomys_ordii
ENSPNAG00000000676	bms1	89	52.814	FBgn0036686	CG7728	94	57.039	Drosophila_melanogaster
ENSPNAG00000000676	bms1	84	66.964	ENSETEG00000009554	BMS1	51	66.964	Echinops_telfairi
ENSPNAG00000000676	bms1	99	62.227	ENSEASG00005006894	BMS1	86	66.602	Equus_asinus_asinus
ENSPNAG00000000676	bms1	99	62.072	ENSECAG00000001358	BMS1	86	66.602	Equus_caballus
ENSPNAG00000000676	bms1	100	71.966	ENSELUG00000001756	bms1	76	85.946	Esox_lucius
ENSPNAG00000000676	bms1	99	62.738	ENSFALG00000006882	BMS1	50	69.289	Ficedula_albicollis
ENSPNAG00000000676	bms1	87	78.939	ENSFHEG00000003367	bms1	52	78.240	Fundulus_heteroclitus
ENSPNAG00000000676	bms1	91	75.520	ENSGMOG00000000718	bms1	89	77.518	Gadus_morhua
ENSPNAG00000000676	bms1	99	68.098	ENSGACG00000015334	bms1	89	77.901	Gasterosteus_aculeatus
ENSPNAG00000000676	bms1	98	63.990	ENSGAGG00000003467	BMS1	98	63.183	Gopherus_agassizii
ENSPNAG00000000676	bms1	97	70.816	ENSHBUG00000022628	bms1	54	76.324	Haplochromis_burtoni
ENSPNAG00000000676	bms1	90	77.814	ENSHCOG00000017604	bms1	97	75.428	Hippocampus_comes
ENSPNAG00000000676	bms1	99	79.735	ENSIPUG00000017855	bms1	99	79.111	Ictalurus_punctatus
ENSPNAG00000000676	bms1	58	71.887	ENSKMAG00000021982	bms1	92	72.340	Kryptolebias_marmoratus
ENSPNAG00000000676	bms1	89	76.555	ENSLBEG00000028208	bms1	96	75.625	Labrus_bergylta
ENSPNAG00000000676	bms1	83	67.636	ENSMFAG00000037771	BMS1	96	67.248	Macaca_fascicularis
ENSPNAG00000000676	bms1	99	68.504	ENSMAMG00000020855	bms1	96	77.229	Mastacembelus_armatus
ENSPNAG00000000676	bms1	97	71.082	ENSMZEG00005005663	bms1	54	76.324	Maylandia_zebra
ENSPNAG00000000676	bms1	95	62.630	ENSMGAG00000001170	BMS1	52	68.971	Meleagris_gallopavo
ENSPNAG00000000676	bms1	87	77.368	ENSMMOG00000000977	bms1	100	67.060	Mola_mola
ENSPNAG00000000676	bms1	99	71.149	ENSMALG00000009680	bms1	95	78.880	Monopterus_albus
ENSPNAG00000000676	bms1	80	79.487	MGP_CAROLIEiJ_G0028785	-	77	75.369	Mus_caroli
ENSPNAG00000000676	bms1	84	69.231	ENSNGAG00000015258	Bms1	85	67.508	Nannospalax_galili
ENSPNAG00000000676	bms1	81	76.108	ENSOPRG00000005195	BMS1	79	76.108	Ochotona_princeps
ENSPNAG00000000676	bms1	100	70.408	ENSONIG00000007227	bms1	53	76.361	Oreochromis_niloticus
ENSPNAG00000000676	bms1	99	63.158	ENSOCUG00000005354	BMS1	51	66.464	Oryctolagus_cuniculus
ENSPNAG00000000676	bms1	90	79.775	ENSORLG00000014655	bms1	52	79.360	Oryzias_latipes
ENSPNAG00000000676	bms1	90	77.796	ENSORLG00015014183	bms1	92	69.686	Oryzias_latipes_hsok
ENSPNAG00000000676	bms1	90	80.417	ENSOMEG00000015042	bms1	54	78.221	Oryzias_melastigma
ENSPNAG00000000676	bms1	99	62.538	ENSPSIG00000006481	BMS1	50	66.667	Pelodiscus_sinensis
ENSPNAG00000000676	bms1	97	68.715	ENSPCIG00000001339	BMS1	81	69.673	Phascolarctos_cinereus
ENSPNAG00000000676	bms1	89	76.367	ENSPFOG00000015180	bms1	90	76.206	Poecilia_formosa
ENSPNAG00000000676	bms1	87	77.778	ENSPMEG00000023176	bms1	91	77.044	Poecilia_mexicana
ENSPNAG00000000676	bms1	87	77.939	ENSPREG00000002695	bms1	53	76.887	Poecilia_reticulata
ENSPNAG00000000676	bms1	69	77.551	ENSPCAG00000014528	BMS1	69	73.733	Procavia_capensis
ENSPNAG00000000676	bms1	97	71.059	ENSPNYG00000018866	bms1	91	68.522	Pundamilia_nyererei
ENSPNAG00000000676	bms1	81	61.269	ENSRNOG00000006576	Bms1	99	61.327	Rattus_norvegicus
ENSPNAG00000000676	bms1	99	60.913	ENSRROG00000040101	BMS1	50	67.666	Rhinopithecus_roxellana
ENSPNAG00000000676	bms1	69	53.784	YPL217C	-	77	55.587	Saccharomyces_cerevisiae
ENSPNAG00000000676	bms1	90	80.998	ENSSDUG00000016875	bms1	86	73.535	Seriola_dumerili
ENSPNAG00000000676	bms1	90	80.998	ENSSLDG00000015199	bms1	99	71.262	Seriola_lalandi_dorsalis
ENSPNAG00000000676	bms1	64	74.000	ENSSARG00000014407	BMS1	67	74.000	Sorex_araneus
ENSPNAG00000000676	bms1	92	70.616	ENSTRUG00000008028	bms1	53	67.481	Takifugu_rubripes
ENSPNAG00000000676	bms1	99	63.601	ENSTNIG00000006216	bms1	81	76.147	Tetraodon_nigroviridis
ENSPNAG00000000676	bms1	61	70.432	ENSTBEG00000001673	-	63	70.946	Tupaia_belangeri
ENSPNAG00000000676	bms1	83	73.166	ENSVPAG00000007477	BMS1	69	75.991	Vicugna_pacos
ENSPNAG00000000676	bms1	98	60.859	ENSXETG00000008158	bms1	76	68.203	Xenopus_tropicalis
ENSPNAG00000000676	bms1	93	77.010	ENSXCOG00000000506	bms1	96	81.863	Xiphophorus_couchianus
ENSPNAG00000000676	bms1	87	77.456	ENSXMAG00000014236	bms1	96	75.975	Xiphophorus_maculatus