EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000001206 (Gene tree)
Gene ID: 108432551
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 160692 bases
Position: chrKV575406.1:1143009-1303700
Accession: 108432551
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000024283	TUDOR	PF00567.24	4.1e-27	1	1
ENSPNAP00000024279	TUDOR	PF00567.24	8.8e-27	1	1
ENSPNAP00000024279	SNase	PF00565.17	1.9e-68	1	4
ENSPNAP00000024279	SNase	PF00565.17	1.9e-68	2	4
ENSPNAP00000024279	SNase	PF00565.17	1.9e-68	3	4
ENSPNAP00000024279	SNase	PF00565.17	1.9e-68	4	4
ENSPNAP00000024283	SNase	PF00565.17	1.4e-61	1	4
ENSPNAP00000024283	SNase	PF00565.17	1.4e-61	2	4
ENSPNAP00000024283	SNase	PF00565.17	1.4e-61	3	4
ENSPNAP00000024283	SNase	PF00565.17	1.4e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000010536	-	3929	XM_017706457	ENSPNAP00000024279	912 (aa)	XP_017561946	UPI0008146B54
ENSPNAT00000010506	-	5858	-	ENSPNAP00000024283	942 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000001206's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000001206's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000001206	snd1	98	84.222	ENSG00000197157	SND1	100	83.260	Homo_sapiens
ENSPNAG00000001206	snd1	99	90.549	ENSAPOG00000017599	snd1	99	90.549	Acanthochromis_polyacanthus
ENSPNAG00000001206	snd1	100	83.515	ENSAMEG00000004664	SND1	94	83.515	Ailuropoda_melanoleuca
ENSPNAG00000001206	snd1	99	87.473	ENSACIG00000003551	snd1	99	87.473	Amphilophus_citrinellus
ENSPNAG00000001206	snd1	99	90.659	ENSAOCG00000014166	snd1	99	90.659	Amphiprion_ocellaris
ENSPNAG00000001206	snd1	99	90.659	ENSAPEG00000007067	snd1	99	90.659	Amphiprion_percula
ENSPNAG00000001206	snd1	98	90.258	ENSATEG00000018475	snd1	89	90.258	Anabas_testudineus
ENSPNAG00000001206	snd1	98	84.444	ENSANAG00000034463	SND1	99	84.572	Aotus_nancymaae
ENSPNAG00000001206	snd1	99	90.659	ENSACLG00000022897	snd1	99	90.659	Astatotilapia_calliptera
ENSPNAG00000001206	snd1	100	95.175	ENSAMXG00000016318	snd1	100	95.175	Astyanax_mexicanus
ENSPNAG00000001206	snd1	98	84.444	ENSBTAG00000010692	SND1	100	83.479	Bos_taurus
ENSPNAG00000001206	snd1	99	47.465	WBGene00006626	tsn-1	99	47.789	Caenorhabditis_elegans
ENSPNAG00000001206	snd1	98	84.222	ENSCJAG00000017668	SND1	99	84.347	Callithrix_jacchus
ENSPNAG00000001206	snd1	100	83.479	ENSCAFG00000001700	SND1	100	83.479	Canis_familiaris
ENSPNAG00000001206	snd1	100	83.479	ENSCAFG00020021639	SND1	100	83.479	Canis_lupus_dingo
ENSPNAG00000001206	snd1	98	84.556	ENSCHIG00000023390	SND1	100	83.589	Capra_hircus
ENSPNAG00000001206	snd1	71	87.762	ENSTSYG00000004979	SND1	96	87.762	Carlito_syrichta
ENSPNAG00000001206	snd1	98	73.585	ENSCAPG00000010677	SND1	98	73.585	Cavia_aperea
ENSPNAG00000001206	snd1	98	84.222	ENSCPOG00000006251	SND1	100	83.260	Cavia_porcellus
ENSPNAG00000001206	snd1	98	84.556	ENSCCAG00000036847	SND1	100	83.589	Cebus_capucinus
ENSPNAG00000001206	snd1	98	84.444	ENSCATG00000035214	SND1	99	84.572	Cercocebus_atys
ENSPNAG00000001206	snd1	98	84.667	ENSCLAG00000011796	SND1	98	85.786	Chinchilla_lanigera
ENSPNAG00000001206	snd1	98	84.444	ENSCSAG00000010182	SND1	100	83.479	Chlorocebus_sabaeus
ENSPNAG00000001206	snd1	77	72.277	ENSCHOG00000002218	SND1	86	72.277	Choloepus_hoffmanni
ENSPNAG00000001206	snd1	99	84.048	ENSCPBG00000018094	SND1	99	84.048	Chrysemys_picta_bellii
ENSPNAG00000001206	snd1	98	57.222	ENSCING00000000524	-	99	56.526	Ciona_intestinalis
ENSPNAG00000001206	snd1	99	57.814	ENSCSAVG00000008807	-	99	57.814	Ciona_savignyi
ENSPNAG00000001206	snd1	98	84.444	ENSCANG00000035119	SND1	100	83.479	Colobus_angolensis_palliatus
ENSPNAG00000001206	snd1	98	84.111	ENSCGRG00001022514	Snd1	98	85.452	Cricetulus_griseus_chok1gshd
ENSPNAG00000001206	snd1	97	84.234	ENSCGRG00000012277	Snd1	99	84.234	Cricetulus_griseus_crigri
ENSPNAG00000001206	snd1	99	89.121	ENSCSEG00000008661	snd1	99	89.121	Cynoglossus_semilaevis
ENSPNAG00000001206	snd1	99	90.440	ENSCVAG00000010316	snd1	100	89.450	Cyprinodon_variegatus
ENSPNAG00000001206	snd1	100	90.263	ENSDARG00000006766	snd1	98	92.870	Danio_rerio
ENSPNAG00000001206	snd1	97	82.492	ENSDNOG00000006795	SND1	100	82.492	Dasypus_novemcinctus
ENSPNAG00000001206	snd1	98	84.333	ENSDORG00000000336	Snd1	100	83.370	Dipodomys_ordii
ENSPNAG00000001206	snd1	98	50.595	FBgn0035121	Tudor-SN	99	50.536	Drosophila_melanogaster
ENSPNAG00000001206	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSPNAG00000001206	snd1	60	68.365	ENSEBUG00000014201	-	84	77.717	Eptatretus_burgeri
ENSPNAG00000001206	snd1	98	83.388	ENSEASG00005008513	SND1	100	82.454	Equus_asinus_asinus
ENSPNAG00000001206	snd1	98	84.556	ENSECAG00000011451	SND1	100	83.589	Equus_caballus
ENSPNAG00000001206	snd1	98	75.222	ENSEEUG00000014737	SND1	100	74.508	Erinaceus_europaeus
ENSPNAG00000001206	snd1	99	88.171	ENSELUG00000001805	snd1	97	88.171	Esox_lucius
ENSPNAG00000001206	snd1	100	83.807	ENSFCAG00000008289	SND1	100	83.807	Felis_catus
ENSPNAG00000001206	snd1	98	84.187	ENSFDAG00000015881	SND1	100	83.151	Fukomys_damarensis
ENSPNAG00000001206	snd1	99	88.817	ENSFHEG00000004093	snd1	99	90.091	Fundulus_heteroclitus
ENSPNAG00000001206	snd1	74	81.356	ENSGMOG00000018932	snd1	57	93.548	Gadus_morhua
ENSPNAG00000001206	snd1	99	90.769	ENSGAFG00000008421	snd1	99	91.226	Gambusia_affinis
ENSPNAG00000001206	snd1	99	57.980	ENSGACG00000019793	snd1	99	57.980	Gasterosteus_aculeatus
ENSPNAG00000001206	snd1	99	83.462	ENSGGOG00000009614	SND1	99	84.572	Gorilla_gorilla
ENSPNAG00000001206	snd1	99	90.549	ENSHBUG00000019135	snd1	99	90.549	Haplochromis_burtoni
ENSPNAG00000001206	snd1	98	84.111	ENSHGLG00000003618	SND1	98	85.452	Heterocephalus_glaber_female
ENSPNAG00000001206	snd1	99	83.700	ENSHGLG00100012449	SND1	99	83.700	Heterocephalus_glaber_male
ENSPNAG00000001206	snd1	99	88.681	ENSHCOG00000005266	snd1	99	88.681	Hippocampus_comes
ENSPNAG00000001206	snd1	100	94.189	ENSIPUG00000013279	snd1	100	94.189	Ictalurus_punctatus
ENSPNAG00000001206	snd1	98	84.444	ENSSTOG00000002140	SND1	100	83.479	Ictidomys_tridecemlineatus
ENSPNAG00000001206	snd1	98	84.556	ENSJJAG00000009561	Snd1	100	83.589	Jaculus_jaculus
ENSPNAG00000001206	snd1	99	90.549	ENSKMAG00000016997	snd1	99	90.549	Kryptolebias_marmoratus
ENSPNAG00000001206	snd1	99	91.246	ENSLBEG00000013563	snd1	99	89.560	Labrus_bergylta
ENSPNAG00000001206	snd1	98	89.911	ENSLOCG00000015537	snd1	100	88.696	Lepisosteus_oculatus
ENSPNAG00000001206	snd1	100	83.807	ENSLAFG00000009696	SND1	100	83.807	Loxodonta_africana
ENSPNAG00000001206	snd1	98	84.444	ENSMFAG00000038114	SND1	99	84.572	Macaca_fascicularis
ENSPNAG00000001206	snd1	98	84.444	ENSMMUG00000015432	SND1	100	83.479	Macaca_mulatta
ENSPNAG00000001206	snd1	98	84.444	ENSMNEG00000039808	SND1	97	87.873	Macaca_nemestrina
ENSPNAG00000001206	snd1	98	84.333	ENSMLEG00000029040	SND1	97	87.873	Mandrillus_leucophaeus
ENSPNAG00000001206	snd1	99	90.549	ENSMAMG00000011739	snd1	99	90.549	Mastacembelus_armatus
ENSPNAG00000001206	snd1	99	90.659	ENSMZEG00005005681	snd1	99	90.659	Maylandia_zebra
ENSPNAG00000001206	snd1	98	84.222	ENSMICG00000000097	SND1	100	83.260	Microcebus_murinus
ENSPNAG00000001206	snd1	98	84.444	ENSMOCG00000005040	Snd1	100	83.479	Microtus_ochrogaster
ENSPNAG00000001206	snd1	99	90.330	ENSMMOG00000001795	snd1	99	90.330	Mola_mola
ENSPNAG00000001206	snd1	98	84.000	ENSMODG00000015182	SND1	100	83.042	Monodelphis_domestica
ENSPNAG00000001206	snd1	99	90.440	ENSMALG00000012071	snd1	99	90.440	Monopterus_albus
ENSPNAG00000001206	snd1	98	84.187	MGP_CAROLIEiJ_G0028159	Snd1	99	85.260	Mus_caroli
ENSPNAG00000001206	snd1	98	83.964	ENSMUSG00000001424	Snd1	100	82.932	Mus_musculus
ENSPNAG00000001206	snd1	98	84.187	MGP_PahariEiJ_G0021917	Snd1	100	85.260	Mus_pahari
ENSPNAG00000001206	snd1	98	84.187	MGP_SPRETEiJ_G0029159	Snd1	100	83.151	Mus_spretus
ENSPNAG00000001206	snd1	100	83.589	ENSMPUG00000006545	SND1	100	83.589	Mustela_putorius_furo
ENSPNAG00000001206	snd1	97	83.426	ENSMLUG00000017130	SND1	99	83.426	Myotis_lucifugus
ENSPNAG00000001206	snd1	98	84.444	ENSNGAG00000011186	Snd1	100	83.479	Nannospalax_galili
ENSPNAG00000001206	snd1	99	90.659	ENSNBRG00000006681	snd1	99	90.659	Neolamprologus_brichardi
ENSPNAG00000001206	snd1	100	83.370	ENSNLEG00000012263	SND1	99	85.930	Nomascus_leucogenys
ENSPNAG00000001206	snd1	91	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSPNAG00000001206	snd1	98	84.667	ENSODEG00000011502	SND1	100	83.899	Octodon_degus
ENSPNAG00000001206	snd1	99	90.769	ENSONIG00000011481	snd1	97	90.769	Oreochromis_niloticus
ENSPNAG00000001206	snd1	98	83.632	ENSOANG00000000817	SND1	99	83.000	Ornithorhynchus_anatinus
ENSPNAG00000001206	snd1	100	83.042	ENSOCUG00000001620	SND1	100	83.042	Oryctolagus_cuniculus
ENSPNAG00000001206	snd1	98	89.509	ENSORLG00000015201	snd1	99	89.011	Oryzias_latipes
ENSPNAG00000001206	snd1	98	89.732	ENSORLG00020013991	snd1	99	89.231	Oryzias_latipes_hni
ENSPNAG00000001206	snd1	98	89.732	ENSORLG00015012436	snd1	99	89.231	Oryzias_latipes_hsok
ENSPNAG00000001206	snd1	99	89.780	ENSOMEG00000006406	snd1	99	89.780	Oryzias_melastigma
ENSPNAG00000001206	snd1	98	84.035	ENSOGAG00000013356	SND1	94	83.079	Otolemur_garnettii
ENSPNAG00000001206	snd1	97	82.340	ENSOARG00000002149	SND1	100	82.340	Ovis_aries
ENSPNAG00000001206	snd1	99	83.518	ENSPPAG00000042947	SND1	100	83.370	Pan_paniscus
ENSPNAG00000001206	snd1	100	83.807	ENSPPRG00000004494	SND1	100	83.807	Panthera_pardus
ENSPNAG00000001206	snd1	100	83.698	ENSPTIG00000014214	SND1	100	83.698	Panthera_tigris_altaica
ENSPNAG00000001206	snd1	99	83.518	ENSPTRG00000023911	SND1	99	84.459	Pan_troglodytes
ENSPNAG00000001206	snd1	97	84.572	ENSPANG00000011997	SND1	99	84.572	Papio_anubis
ENSPNAG00000001206	snd1	99	87.445	ENSPKIG00000023494	snd1	100	86.942	Paramormyrops_kingsleyae
ENSPNAG00000001206	snd1	92	89.857	ENSPMGG00000003629	snd1	100	89.857	Periophthalmus_magnuspinnatus
ENSPNAG00000001206	snd1	98	84.222	ENSPEMG00000010240	Snd1	100	83.260	Peromyscus_maniculatus_bairdii
ENSPNAG00000001206	snd1	97	74.324	ENSPMAG00000007915	-	99	74.324	Petromyzon_marinus
ENSPNAG00000001206	snd1	98	84.444	ENSPCIG00000011561	SND1	100	83.479	Phascolarctos_cinereus
ENSPNAG00000001206	snd1	99	90.549	ENSPFOG00000001557	snd1	99	90.549	Poecilia_formosa
ENSPNAG00000001206	snd1	99	90.659	ENSPLAG00000018459	snd1	97	90.659	Poecilia_latipinna
ENSPNAG00000001206	snd1	99	90.659	ENSPMEG00000006803	snd1	99	90.659	Poecilia_mexicana
ENSPNAG00000001206	snd1	99	90.440	ENSPREG00000002189	snd1	99	90.440	Poecilia_reticulata
ENSPNAG00000001206	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSPNAG00000001206	snd1	98	74.111	ENSPCAG00000011305	SND1	100	73.414	Procavia_capensis
ENSPNAG00000001206	snd1	98	84.222	ENSPCOG00000026791	SND1	100	84.364	Propithecus_coquereli
ENSPNAG00000001206	snd1	98	82.556	ENSPVAG00000013945	SND1	100	81.619	Pteropus_vampyrus
ENSPNAG00000001206	snd1	99	90.549	ENSPNYG00000000932	snd1	99	90.549	Pundamilia_nyererei
ENSPNAG00000001206	snd1	98	84.076	ENSRNOG00000031173	Snd1	100	83.352	Rattus_norvegicus
ENSPNAG00000001206	snd1	71	87.925	ENSRBIG00000027782	-	93	87.925	Rhinopithecus_bieti
ENSPNAG00000001206	snd1	100	82.969	ENSRROG00000033020	SND1	100	83.479	Rhinopithecus_roxellana
ENSPNAG00000001206	snd1	98	84.444	ENSSBOG00000032461	SND1	99	84.572	Saimiri_boliviensis_boliviensis
ENSPNAG00000001206	snd1	98	80.915	ENSSHAG00000015359	SND1	100	80.915	Sarcophilus_harrisii
ENSPNAG00000001206	snd1	98	89.900	ENSSFOG00015001103	snd1	100	89.010	Scleropages_formosus
ENSPNAG00000001206	snd1	98	90.290	ENSSMAG00000001932	snd1	94	89.670	Scophthalmus_maximus
ENSPNAG00000001206	snd1	99	90.330	ENSSDUG00000002699	snd1	93	90.330	Seriola_dumerili
ENSPNAG00000001206	snd1	99	82.747	ENSSLDG00000001950	snd1	99	82.747	Seriola_lalandi_dorsalis
ENSPNAG00000001206	snd1	86	79.883	ENSSARG00000004877	SND1	92	79.883	Sorex_araneus
ENSPNAG00000001206	snd1	72	80.829	ENSSPUG00000017586	SND1	96	80.829	Sphenodon_punctatus
ENSPNAG00000001206	snd1	74	89.799	ENSSPAG00000021398	snd1	98	90.339	Stegastes_partitus
ENSPNAG00000001206	snd1	98	84.333	ENSSSCG00000016590	SND1	100	83.370	Sus_scrofa
ENSPNAG00000001206	snd1	92	97.222	ENSTRUG00000014067	snd1	99	88.352	Takifugu_rubripes
ENSPNAG00000001206	snd1	99	88.791	ENSTNIG00000011019	snd1	99	88.791	Tetraodon_nigroviridis
ENSPNAG00000001206	snd1	93	78.756	ENSTBEG00000003999	SND1	100	78.756	Tupaia_belangeri
ENSPNAG00000001206	snd1	98	80.333	ENSTTRG00000006059	SND1	100	79.431	Tursiops_truncatus
ENSPNAG00000001206	snd1	69	75.718	ENSUAMG00000002820	-	89	75.718	Ursus_americanus
ENSPNAG00000001206	snd1	87	84.091	ENSUAMG00000005604	-	93	84.091	Ursus_americanus
ENSPNAG00000001206	snd1	100	83.589	ENSUMAG00000005960	SND1	100	83.589	Ursus_maritimus
ENSPNAG00000001206	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSPNAG00000001206	snd1	100	83.479	ENSVVUG00000007226	SND1	100	83.479	Vulpes_vulpes
ENSPNAG00000001206	snd1	97	80.315	ENSXETG00000023043	snd1	100	80.296	Xenopus_tropicalis
ENSPNAG00000001206	snd1	92	87.796	ENSXCOG00000013629	snd1	99	87.796	Xiphophorus_couchianus
ENSPNAG00000001206	snd1	99	90.989	ENSXMAG00000011469	snd1	99	90.989	Xiphophorus_maculatus