EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPNAG00000001887 (Gene tree)
Gene ID
108431375
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Pygocentrus_nattereri
Status
putative
Strand
Plus strand
Length
6193 bases
Position
chrKV575387.1:1683617-1689809
Accession
108431375
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPNAP00000026422LSMPF01423.221.2e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPNAT00000005195-1209XM_017704460ENSPNAP0000002642291 (aa)XP_017559949UPI0003E3DB6F
Gene Model
Click here to download ENSPNAG00000001887's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000001887's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPNAG00000001887lsm58236.000ENSPNAG00000023467lsm37436.000
ENSPNAG00000001887lsm56534.426ENSPNAG00000013300snrpe6834.426
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPNAG00000001887lsm510093.407ENSG00000106355LSM510096.774Homo_sapiens
ENSPNAG00000001887lsm59093.902ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSPNAG00000001887lsm510095.604ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSPNAG00000001887lsm510093.407ENSAMEG00000006700LSM510093.407Ailuropoda_melanoleuca
ENSPNAG00000001887lsm59560.465ENSACIG00000019185lsm59660.465Amphilophus_citrinellus
ENSPNAG00000001887lsm510095.604ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSPNAG00000001887lsm56898.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSPNAG00000001887lsm510095.604ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSPNAG00000001887lsm59096.341ENSATEG00000020470lsm510062.637Anabas_testudineus
ENSPNAG00000001887lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSPNAG00000001887lsm56291.071ENSACAG00000009530LSM59391.071Anolis_carolinensis
ENSPNAG00000001887lsm59991.111ENSANAG00000024192-9491.111Aotus_nancymaae
ENSPNAG00000001887lsm510094.505ENSANAG00000034409-10094.505Aotus_nancymaae
ENSPNAG00000001887lsm510072.527ENSANAG00000037758-10072.527Aotus_nancymaae
ENSPNAG00000001887lsm59597.674ENSACLG00000012891lsm59897.674Astatotilapia_calliptera
ENSPNAG00000001887lsm510086.170ENSAMXG00000035543lsm510086.170Astyanax_mexicanus
ENSPNAG00000001887lsm55372.917ENSBTAG00000052014-6372.917Bos_taurus
ENSPNAG00000001887lsm510093.407ENSBTAG00000002332LSM510093.407Bos_taurus
ENSPNAG00000001887lsm510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSPNAG00000001887lsm59981.111ENSCJAG00000005678-10081.111Callithrix_jacchus
ENSPNAG00000001887lsm510093.407ENSCJAG00000047379LSM58182.692Callithrix_jacchus
ENSPNAG00000001887lsm55584.000ENSCAFG00000030781-5884.000Canis_familiaris
ENSPNAG00000001887lsm510092.308ENSCAFG00000019261-10092.308Canis_familiaris
ENSPNAG00000001887lsm510093.407ENSCAFG00020004946LSM510093.407Canis_lupus_dingo
ENSPNAG00000001887lsm510093.407ENSCHIG00000024539LSM510093.407Capra_hircus
ENSPNAG00000001887lsm510091.209ENSCHIG00000004079-10091.209Capra_hircus
ENSPNAG00000001887lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSPNAG00000001887lsm510068.132ENSTSYG00000036637-10068.132Carlito_syrichta
ENSPNAG00000001887lsm510081.319ENSTSYG00000028728-10081.319Carlito_syrichta
ENSPNAG00000001887lsm510093.407ENSTSYG00000006449-10093.407Carlito_syrichta
ENSPNAG00000001887lsm510076.923ENSTSYG00000026530-9176.923Carlito_syrichta
ENSPNAG00000001887lsm58290.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSPNAG00000001887lsm510093.407ENSCPOG00000036386LSM510093.407Cavia_porcellus
ENSPNAG00000001887lsm510092.308ENSCCAG00000000821-10092.308Cebus_capucinus
ENSPNAG00000001887lsm510062.637ENSCCAG00000037334-10062.637Cebus_capucinus
ENSPNAG00000001887lsm510074.725ENSCCAG00000032792-10074.725Cebus_capucinus
ENSPNAG00000001887lsm510091.209ENSCCAG00000032123-10091.209Cebus_capucinus
ENSPNAG00000001887lsm510093.407ENSCCAG00000037808-10093.407Cebus_capucinus
ENSPNAG00000001887lsm510093.407ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSPNAG00000001887lsm59982.222ENSCATG00000014790-9589.091Cercocebus_atys
ENSPNAG00000001887lsm510093.407ENSCLAG00000000202LSM510093.407Chinchilla_lanigera
ENSPNAG00000001887lsm510079.121ENSCLAG00000005062-9079.121Chinchilla_lanigera
ENSPNAG00000001887lsm58293.333ENSCHOG00000005335LSM59993.333Choloepus_hoffmanni
ENSPNAG00000001887lsm510093.407ENSCPBG00000013685LSM510093.407Chrysemys_picta_bellii
ENSPNAG00000001887lsm59587.209ENSCING00000020625-9787.209Ciona_intestinalis
ENSPNAG00000001887lsm59587.209ENSCSAVG00000001439-9887.209Ciona_savignyi
ENSPNAG00000001887lsm510093.407ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSPNAG00000001887lsm510093.407ENSCGRG00001015461Lsm510093.407Cricetulus_griseus_chok1gshd
ENSPNAG00000001887lsm58297.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSPNAG00000001887lsm510059.341ENSCSEG00000015286lsm510059.341Cynoglossus_semilaevis
ENSPNAG00000001887lsm510097.802ENSCVAG00000004262lsm510097.802Cyprinodon_variegatus
ENSPNAG00000001887lsm510096.703ENSDARG00000071573lsm5100100.000Danio_rerio
ENSPNAG00000001887lsm59682.759ENSDNOG00000049495-9682.759Dasypus_novemcinctus
ENSPNAG00000001887lsm510093.407ENSDNOG00000034958LSM510093.407Dasypus_novemcinctus
ENSPNAG00000001887lsm510093.407ENSDORG00000009422Lsm510093.407Dipodomys_ordii
ENSPNAG00000001887lsm59882.022FBgn0035675CG66109882.022Drosophila_melanogaster
ENSPNAG00000001887lsm59876.404ENSETEG00000010651-9976.404Echinops_telfairi
ENSPNAG00000001887lsm58178.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSPNAG00000001887lsm59861.798ENSETEG00000000777-9961.798Echinops_telfairi
ENSPNAG00000001887lsm510093.407ENSETEG00000018068LSM510093.407Echinops_telfairi
ENSPNAG00000001887lsm59973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSPNAG00000001887lsm510093.407ENSEBUG00000008540lsm510093.407Eptatretus_burgeri
ENSPNAG00000001887lsm510093.407ENSEASG00005003500LSM510093.407Equus_asinus_asinus
ENSPNAG00000001887lsm510079.121ENSECAG00000018445LSM510079.121Equus_caballus
ENSPNAG00000001887lsm56392.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSPNAG00000001887lsm510098.901ENSELUG00000007792lsm510098.901Esox_lucius
ENSPNAG00000001887lsm510093.407ENSFCAG00000000230LSM510093.407Felis_catus
ENSPNAG00000001887lsm58497.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSPNAG00000001887lsm510093.407ENSFDAG00000008767LSM510093.407Fukomys_damarensis
ENSPNAG00000001887lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSPNAG00000001887lsm59580.460ENSFHEG00000004011lsm59480.460Fundulus_heteroclitus
ENSPNAG00000001887lsm59997.778ENSGMOG00000018235lsm510097.778Gadus_morhua
ENSPNAG00000001887lsm510093.407ENSGALG00000041625LSM510093.407Gallus_gallus
ENSPNAG00000001887lsm56898.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSPNAG00000001887lsm510096.703ENSGACG00000005528lsm510096.703Gasterosteus_aculeatus
ENSPNAG00000001887lsm510093.407ENSGAGG00000015593LSM510093.407Gopherus_agassizii
ENSPNAG00000001887lsm510093.407ENSGGOG00000043469LSM510093.407Gorilla_gorilla
ENSPNAG00000001887lsm59597.674ENSHBUG00000013773lsm59897.674Haplochromis_burtoni
ENSPNAG00000001887lsm510093.407ENSHGLG00000011765LSM510093.407Heterocephalus_glaber_female
ENSPNAG00000001887lsm510090.110ENSHGLG00100015610LSM510090.110Heterocephalus_glaber_male
ENSPNAG00000001887lsm510059.341ENSHCOG00000008288lsm510059.341Hippocampus_comes
ENSPNAG00000001887lsm5100100.000ENSIPUG00000021095LSM5100100.000Ictalurus_punctatus
ENSPNAG00000001887lsm510093.407ENSSTOG00000012662LSM510093.407Ictidomys_tridecemlineatus
ENSPNAG00000001887lsm59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSPNAG00000001887lsm510091.209ENSJJAG00000012145-10091.209Jaculus_jaculus
ENSPNAG00000001887lsm58786.076ENSJJAG00000004475-10086.076Jaculus_jaculus
ENSPNAG00000001887lsm510065.934ENSJJAG00000016144-9265.934Jaculus_jaculus
ENSPNAG00000001887lsm510094.505ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSPNAG00000001887lsm56283.929ENSLBEG00000017379lsm59283.929Labrus_bergylta
ENSPNAG00000001887lsm59096.341ENSLBEG00000009235LSM56596.341Labrus_bergylta
ENSPNAG00000001887lsm510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSPNAG00000001887lsm510097.802ENSLOCG00000012903lsm510097.802Lepisosteus_oculatus
ENSPNAG00000001887lsm510071.429ENSLAFG00000027938-10071.429Loxodonta_africana
ENSPNAG00000001887lsm510093.407ENSLAFG00000029579LSM510093.407Loxodonta_africana
ENSPNAG00000001887lsm510091.209ENSMFAG00000030152-10091.209Macaca_fascicularis
ENSPNAG00000001887lsm510093.407ENSMFAG00000038508LSM510093.407Macaca_fascicularis
ENSPNAG00000001887lsm55387.500ENSMFAG00000031187-8187.500Macaca_fascicularis
ENSPNAG00000001887lsm59983.333ENSMMUG00000039822-10083.333Macaca_mulatta
ENSPNAG00000001887lsm510091.209ENSMMUG00000030131-10091.209Macaca_mulatta
ENSPNAG00000001887lsm55782.692ENSMMUG00000045129-8182.692Macaca_mulatta
ENSPNAG00000001887lsm510091.209ENSMNEG00000037935-10091.209Macaca_nemestrina
ENSPNAG00000001887lsm510093.407ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSPNAG00000001887lsm59882.022ENSMLEG00000034037-10082.022Mandrillus_leucophaeus
ENSPNAG00000001887lsm510093.407ENSMLEG00000024945LSM510093.407Mandrillus_leucophaeus
ENSPNAG00000001887lsm510091.209ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSPNAG00000001887lsm59597.674ENSMZEG00005019554lsm59897.674Maylandia_zebra
ENSPNAG00000001887lsm510093.407ENSMGAG00000012117LSM510093.407Meleagris_gallopavo
ENSPNAG00000001887lsm510093.407ENSMAUG00000012222Lsm510093.407Mesocricetus_auratus
ENSPNAG00000001887lsm510092.308ENSMAUG00000008132-10092.308Mesocricetus_auratus
ENSPNAG00000001887lsm59972.222ENSMICG00000033928-9672.222Microcebus_murinus
ENSPNAG00000001887lsm510093.407ENSMICG00000005353LSM510093.407Microcebus_murinus
ENSPNAG00000001887lsm510093.407ENSMOCG00000012018Lsm510093.407Microtus_ochrogaster
ENSPNAG00000001887lsm58498.684ENSMMOG00000004026lsm58798.684Mola_mola
ENSPNAG00000001887lsm56896.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSPNAG00000001887lsm56895.161ENSMALG00000010343lsm510095.161Monopterus_albus
ENSPNAG00000001887lsm510093.407MGP_CAROLIEiJ_G0028421Lsm510093.407Mus_caroli
ENSPNAG00000001887lsm510093.407ENSMUSG00000091625Lsm510093.407Mus_musculus
ENSPNAG00000001887lsm510093.407MGP_PahariEiJ_G0022171Lsm510093.407Mus_pahari
ENSPNAG00000001887lsm510093.407MGP_SPRETEiJ_G0029423Lsm510093.407Mus_spretus
ENSPNAG00000001887lsm510093.407ENSMLUG00000017028LSM510093.407Myotis_lucifugus
ENSPNAG00000001887lsm510081.720ENSNGAG00000017707-10081.720Nannospalax_galili
ENSPNAG00000001887lsm510093.407ENSNGAG00000024142Lsm510093.407Nannospalax_galili
ENSPNAG00000001887lsm59973.333ENSNGAG00000022569-9673.333Nannospalax_galili
ENSPNAG00000001887lsm56398.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSPNAG00000001887lsm510093.407ENSNLEG00000015268LSM510093.407Nomascus_leucogenys
ENSPNAG00000001887lsm58297.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSPNAG00000001887lsm510093.407ENSODEG00000019072-10093.407Octodon_degus
ENSPNAG00000001887lsm510093.407ENSODEG00000008258-10093.407Octodon_degus
ENSPNAG00000001887lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSPNAG00000001887lsm510093.407ENSOCUG00000029043LSM510093.407Oryctolagus_cuniculus
ENSPNAG00000001887lsm510094.505ENSORLG00000027725lsm55894.505Oryzias_latipes
ENSPNAG00000001887lsm59690.805ENSORLG00020003019lsm58690.805Oryzias_latipes_hni
ENSPNAG00000001887lsm510094.505ENSORLG00015003338lsm510094.505Oryzias_latipes_hsok
ENSPNAG00000001887lsm510095.604ENSOMEG00000001078lsm510095.604Oryzias_melastigma
ENSPNAG00000001887lsm510093.407ENSOGAG00000013892LSM510093.407Otolemur_garnettii
ENSPNAG00000001887lsm510093.407ENSOARG00000006944LSM510093.407Ovis_aries
ENSPNAG00000001887lsm510093.407ENSPPAG00000003697-10093.407Pan_paniscus
ENSPNAG00000001887lsm510093.407ENSPPRG00000002550LSM510093.407Panthera_pardus
ENSPNAG00000001887lsm510093.407ENSPTIG00000015604LSM510093.407Panthera_tigris_altaica
ENSPNAG00000001887lsm510076.923ENSPTRG00000049488-10079.121Pan_troglodytes
ENSPNAG00000001887lsm510093.407ENSPTRG00000019057LSM510093.407Pan_troglodytes
ENSPNAG00000001887lsm510090.110ENSPANG00000033477-10090.110Papio_anubis
ENSPNAG00000001887lsm510093.407ENSPANG00000032179-10093.407Papio_anubis
ENSPNAG00000001887lsm59983.333ENSPANG00000032538-10083.333Papio_anubis
ENSPNAG00000001887lsm510097.802ENSPKIG00000011910lsm510097.802Paramormyrops_kingsleyae
ENSPNAG00000001887lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSPNAG00000001887lsm56898.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSPNAG00000001887lsm55289.362ENSPEMG00000019994-8089.362Peromyscus_maniculatus_bairdii
ENSPNAG00000001887lsm510067.033ENSPEMG00000022375-10067.033Peromyscus_maniculatus_bairdii
ENSPNAG00000001887lsm510097.802ENSPFOG00000001433lsm510097.802Poecilia_formosa
ENSPNAG00000001887lsm510097.802ENSPLAG00000009665lsm510097.802Poecilia_latipinna
ENSPNAG00000001887lsm510097.802ENSPMEG00000022265lsm510097.802Poecilia_mexicana
ENSPNAG00000001887lsm56898.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSPNAG00000001887lsm510090.110ENSPPYG00000017661LSM510090.110Pongo_abelii
ENSPNAG00000001887lsm58993.827ENSPCAG00000013740LSM510093.827Procavia_capensis
ENSPNAG00000001887lsm510093.407ENSPVAG00000009786LSM510093.407Pteropus_vampyrus
ENSPNAG00000001887lsm59597.674ENSPNYG00000022236lsm59897.674Pundamilia_nyererei
ENSPNAG00000001887lsm510093.407ENSRNOG00000042126Lsm510093.407Rattus_norvegicus
ENSPNAG00000001887lsm510090.217ENSRNOG00000027305AABR07065089.110090.217Rattus_norvegicus
ENSPNAG00000001887lsm510092.308ENSRBIG00000024431-10092.308Rhinopithecus_bieti
ENSPNAG00000001887lsm510093.407ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSPNAG00000001887lsm510093.407ENSRBIG00000030340-10093.407Rhinopithecus_bieti
ENSPNAG00000001887lsm510093.407ENSRBIG00000030714-10093.407Rhinopithecus_bieti
ENSPNAG00000001887lsm510093.407ENSRROG00000023884-10093.407Rhinopithecus_roxellana
ENSPNAG00000001887lsm510093.407ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSPNAG00000001887lsm510093.407ENSRROG00000004655-10093.407Rhinopithecus_roxellana
ENSPNAG00000001887lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSPNAG00000001887lsm510091.209ENSSBOG00000019124-10091.209Saimiri_boliviensis_boliviensis
ENSPNAG00000001887lsm510093.407ENSSBOG00000012312LSM510093.407Saimiri_boliviensis_boliviensis
ENSPNAG00000001887lsm510071.429ENSSBOG00000034794-10071.429Saimiri_boliviensis_boliviensis
ENSPNAG00000001887lsm510097.802ENSSFOG00015010099lsm510097.802Scleropages_formosus
ENSPNAG00000001887lsm510061.538ENSSMAG00000007895lsm510061.538Scophthalmus_maximus
ENSPNAG00000001887lsm56898.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSPNAG00000001887lsm510096.703ENSSLDG00000025242lsm510096.703Seriola_lalandi_dorsalis
ENSPNAG00000001887lsm58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSPNAG00000001887lsm510064.835ENSSARG00000003330LSM510064.835Sorex_araneus
ENSPNAG00000001887lsm510091.209ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSPNAG00000001887lsm510060.440ENSSPAG00000005435lsm510060.440Stegastes_partitus
ENSPNAG00000001887lsm57682.609ENSSSCG00000029661-9682.609Sus_scrofa
ENSPNAG00000001887lsm510093.407ENSSSCG00000026064-10093.407Sus_scrofa
ENSPNAG00000001887lsm510094.505ENSTGUG00000017539LSM510094.505Taeniopygia_guttata
ENSPNAG00000001887lsm58587.805ENSTRUG00000017749lsm56487.805Takifugu_rubripes
ENSPNAG00000001887lsm59596.512ENSTNIG00000008695lsm59896.512Tetraodon_nigroviridis
ENSPNAG00000001887lsm510093.407ENSTBEG00000004876LSM510093.407Tupaia_belangeri
ENSPNAG00000001887lsm510093.407ENSTTRG00000004237LSM510093.407Tursiops_truncatus
ENSPNAG00000001887lsm55782.692ENSUAMG00000009786LSM56882.692Ursus_americanus
ENSPNAG00000001887lsm510092.308ENSUMAG00000002625LSM56592.308Ursus_maritimus
ENSPNAG00000001887lsm510093.407ENSVPAG00000009985LSM510093.407Vicugna_pacos
ENSPNAG00000001887lsm510093.407ENSVVUG00000021311LSM510093.407Vulpes_vulpes
ENSPNAG00000001887lsm59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSPNAG00000001887lsm56898.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSPNAG00000001887lsm510097.802ENSXMAG00000029988lsm510097.802Xiphophorus_maculatus

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