EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000001944 (Gene tree)
Gene ID: 108436385
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 16328 bases
Position: chrKV575492.1:514986-531313
Accession: 108436385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000005635	EXOSC1	PF10447.9	1.5e-15	1	1
ENSPNAP00000005647	EXOSC1	PF10447.9	8.5e-13	1	1
ENSPNAP00000005635	ECR1_N	PF14382.6	4.7e-14	1	1
ENSPNAP00000005647	ECR1_N	PF14382.6	2.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000004948	-	504	-	ENSPNAP00000005647	167 (aa)	-	-
ENSPNAT00000004955	-	4787	XM_017712836	ENSPNAP00000005635	194 (aa)	XP_017568325	UPI0008146445

Gene Model

Click here to download ENSPNAG00000001944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000001944's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000001944	exosc1	98	80.628	ENSG00000171311	EXOSC1	98	80.628	Homo_sapiens
ENSPNAG00000001944	exosc1	100	94.330	ENSAPOG00000007822	exosc1	100	94.330	Acanthochromis_polyacanthus
ENSPNAG00000001944	exosc1	98	81.152	ENSAMEG00000000129	EXOSC1	98	81.152	Ailuropoda_melanoleuca
ENSPNAG00000001944	exosc1	95	92.432	ENSACIG00000018956	exosc1	91	92.432	Amphilophus_citrinellus
ENSPNAG00000001944	exosc1	100	93.814	ENSAOCG00000010699	exosc1	100	93.814	Amphiprion_ocellaris
ENSPNAG00000001944	exosc1	93	82.778	ENSAPEG00000012690	exosc1	97	82.778	Amphiprion_percula
ENSPNAG00000001944	exosc1	100	93.299	ENSATEG00000018683	exosc1	100	93.299	Anabas_testudineus
ENSPNAG00000001944	exosc1	96	79.144	ENSACAG00000002101	EXOSC1	96	79.144	Anolis_carolinensis
ENSPNAG00000001944	exosc1	99	79.762	ENSANAG00000034669	EXOSC1	99	79.762	Aotus_nancymaae
ENSPNAG00000001944	exosc1	100	93.299	ENSACLG00000021243	exosc1	100	93.299	Astatotilapia_calliptera
ENSPNAG00000001944	exosc1	100	98.969	ENSAMXG00000011116	exosc1	100	98.969	Astyanax_mexicanus
ENSPNAG00000001944	exosc1	98	81.152	ENSBTAG00000012699	EXOSC1	98	81.152	Bos_taurus
ENSPNAG00000001944	exosc1	94	36.126	WBGene00012966	exos-1	92	36.126	Caenorhabditis_elegans
ENSPNAG00000001944	exosc1	99	79.167	ENSCJAG00000016586	EXOSC1	99	79.167	Callithrix_jacchus
ENSPNAG00000001944	exosc1	98	80.628	ENSCAFG00000009068	EXOSC1	92	80.628	Canis_familiaris
ENSPNAG00000001944	exosc1	98	80.628	ENSCAFG00020006002	EXOSC1	92	80.628	Canis_lupus_dingo
ENSPNAG00000001944	exosc1	98	81.152	ENSCHIG00000015253	EXOSC1	98	81.152	Capra_hircus
ENSPNAG00000001944	exosc1	99	79.167	ENSTSYG00000000760	EXOSC1	99	79.167	Carlito_syrichta
ENSPNAG00000001944	exosc1	98	81.152	ENSCPOG00000001173	EXOSC1	98	81.152	Cavia_porcellus
ENSPNAG00000001944	exosc1	99	47.024	ENSCCAG00000023986	EXOSC1	99	47.024	Cebus_capucinus
ENSPNAG00000001944	exosc1	98	80.628	ENSCATG00000034114	EXOSC1	98	80.628	Cercocebus_atys
ENSPNAG00000001944	exosc1	98	81.152	ENSCLAG00000002463	EXOSC1	98	81.152	Chinchilla_lanigera
ENSPNAG00000001944	exosc1	98	80.105	ENSCSAG00000005870	EXOSC1	98	80.105	Chlorocebus_sabaeus
ENSPNAG00000001944	exosc1	95	69.022	ENSCHOG00000006477	EXOSC1	98	69.022	Choloepus_hoffmanni
ENSPNAG00000001944	exosc1	55	69.159	ENSCPBG00000011949	EXOSC1	88	69.159	Chrysemys_picta_bellii
ENSPNAG00000001944	exosc1	99	53.886	ENSCING00000022734	-	92	53.886	Ciona_intestinalis
ENSPNAG00000001944	exosc1	99	58.031	ENSCSAVG00000010865	-	98	58.031	Ciona_savignyi
ENSPNAG00000001944	exosc1	98	80.628	ENSCANG00000034159	EXOSC1	98	80.628	Colobus_angolensis_palliatus
ENSPNAG00000001944	exosc1	98	79.581	ENSCGRG00001000335	Exosc1	98	79.581	Cricetulus_griseus_chok1gshd
ENSPNAG00000001944	exosc1	98	79.581	ENSCGRG00000011602	Exosc1	98	79.581	Cricetulus_griseus_crigri
ENSPNAG00000001944	exosc1	95	91.195	ENSCSEG00000007895	exosc1	91	91.195	Cynoglossus_semilaevis
ENSPNAG00000001944	exosc1	100	84.536	ENSCVAG00000016748	exosc1	100	84.536	Cyprinodon_variegatus
ENSPNAG00000001944	exosc1	100	96.392	ENSDARG00000059841	exosc1	100	96.392	Danio_rerio
ENSPNAG00000001944	exosc1	74	77.241	ENSDNOG00000007983	EXOSC1	98	77.241	Dasypus_novemcinctus
ENSPNAG00000001944	exosc1	98	80.105	ENSDORG00000016528	Exosc1	98	80.105	Dipodomys_ordii
ENSPNAG00000001944	exosc1	95	50.526	FBgn0032346	Csl4	92	50.526	Drosophila_melanogaster
ENSPNAG00000001944	exosc1	98	79.058	ENSETEG00000002469	-	98	79.058	Echinops_telfairi
ENSPNAG00000001944	exosc1	97	68.750	ENSEBUG00000008164	exosc1	96	68.750	Eptatretus_burgeri
ENSPNAG00000001944	exosc1	98	73.298	ENSEASG00005008684	EXOSC1	98	73.298	Equus_asinus_asinus
ENSPNAG00000001944	exosc1	60	59.483	ENSECAG00000010621	EXOSC1	69	59.483	Equus_caballus
ENSPNAG00000001944	exosc1	98	79.581	ENSEEUG00000005647	EXOSC1	98	79.581	Erinaceus_europaeus
ENSPNAG00000001944	exosc1	99	87.817	ENSELUG00000017369	exosc1	93	86.250	Esox_lucius
ENSPNAG00000001944	exosc1	98	81.152	ENSFCAG00000040563	EXOSC1	99	79.762	Felis_catus
ENSPNAG00000001944	exosc1	98	79.058	ENSFALG00000008450	EXOSC1	98	79.058	Ficedula_albicollis
ENSPNAG00000001944	exosc1	98	81.152	ENSFDAG00000000846	EXOSC1	98	81.152	Fukomys_damarensis
ENSPNAG00000001944	exosc1	100	85.052	ENSFHEG00000009154	exosc1	100	85.052	Fundulus_heteroclitus
ENSPNAG00000001944	exosc1	100	92.268	ENSGMOG00000008993	exosc1	100	92.268	Gadus_morhua
ENSPNAG00000001944	exosc1	99	77.976	ENSGALG00000039917	EXOSC1	99	83.448	Gallus_gallus
ENSPNAG00000001944	exosc1	100	85.567	ENSGAFG00000010265	exosc1	95	85.567	Gambusia_affinis
ENSPNAG00000001944	exosc1	100	90.206	ENSGACG00000018936	exosc1	100	90.206	Gasterosteus_aculeatus
ENSPNAG00000001944	exosc1	98	78.534	ENSGAGG00000019192	EXOSC1	98	78.534	Gopherus_agassizii
ENSPNAG00000001944	exosc1	99	79.167	ENSGGOG00000003099	EXOSC1	99	79.167	Gorilla_gorilla
ENSPNAG00000001944	exosc1	100	93.299	ENSHBUG00000017857	exosc1	100	93.299	Haplochromis_burtoni
ENSPNAG00000001944	exosc1	98	80.628	ENSHGLG00000016927	EXOSC1	98	80.628	Heterocephalus_glaber_female
ENSPNAG00000001944	exosc1	98	80.628	ENSHGLG00100012208	EXOSC1	98	80.628	Heterocephalus_glaber_male
ENSPNAG00000001944	exosc1	100	90.206	ENSHCOG00000019882	exosc1	100	90.206	Hippocampus_comes
ENSPNAG00000001944	exosc1	100	96.907	ENSIPUG00000007685	exosc1	100	96.907	Ictalurus_punctatus
ENSPNAG00000001944	exosc1	98	80.105	ENSSTOG00000006615	EXOSC1	98	80.105	Ictidomys_tridecemlineatus
ENSPNAG00000001944	exosc1	59	66.667	ENSSTOG00000029860	-	87	66.667	Ictidomys_tridecemlineatus
ENSPNAG00000001944	exosc1	98	80.628	ENSJJAG00000013311	Exosc1	98	80.628	Jaculus_jaculus
ENSPNAG00000001944	exosc1	100	89.175	ENSKMAG00000001202	exosc1	82	89.175	Kryptolebias_marmoratus
ENSPNAG00000001944	exosc1	100	92.784	ENSLBEG00000011448	exosc1	100	92.784	Labrus_bergylta
ENSPNAG00000001944	exosc1	100	69.000	ENSLOCG00000003776	exosc1	100	69.000	Lepisosteus_oculatus
ENSPNAG00000001944	exosc1	98	80.628	ENSLAFG00000015983	EXOSC1	98	80.628	Loxodonta_africana
ENSPNAG00000001944	exosc1	98	80.628	ENSMFAG00000001493	EXOSC1	98	80.628	Macaca_fascicularis
ENSPNAG00000001944	exosc1	98	80.628	ENSMMUG00000020028	EXOSC1	99	79.167	Macaca_mulatta
ENSPNAG00000001944	exosc1	98	80.628	ENSMNEG00000029816	EXOSC1	98	80.628	Macaca_nemestrina
ENSPNAG00000001944	exosc1	98	74.869	ENSMLEG00000027643	EXOSC1	98	74.869	Mandrillus_leucophaeus
ENSPNAG00000001944	exosc1	100	93.299	ENSMAMG00000012200	exosc1	100	93.299	Mastacembelus_armatus
ENSPNAG00000001944	exosc1	100	93.299	ENSMZEG00005007042	exosc1	100	93.299	Maylandia_zebra
ENSPNAG00000001944	exosc1	99	79.167	ENSMAUG00000020462	-	99	79.167	Mesocricetus_auratus
ENSPNAG00000001944	exosc1	99	79.762	ENSMICG00000007664	EXOSC1	99	79.762	Microcebus_murinus
ENSPNAG00000001944	exosc1	98	79.581	ENSMOCG00000006004	-	98	79.581	Microtus_ochrogaster
ENSPNAG00000001944	exosc1	97	75.132	ENSMOCG00000017124	-	96	75.132	Microtus_ochrogaster
ENSPNAG00000001944	exosc1	100	68.041	ENSMMOG00000021403	exosc1	100	68.041	Mola_mola
ENSPNAG00000001944	exosc1	98	81.250	ENSMODG00000004213	EXOSC1	98	81.250	Monodelphis_domestica
ENSPNAG00000001944	exosc1	95	92.973	ENSMALG00000007061	exosc1	93	92.973	Monopterus_albus
ENSPNAG00000001944	exosc1	98	79.058	MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	Mus_caroli
ENSPNAG00000001944	exosc1	98	79.058	ENSMUSG00000034321	Exosc1	98	79.058	Mus_musculus
ENSPNAG00000001944	exosc1	98	79.581	MGP_PahariEiJ_G0014449	Exosc1	98	79.581	Mus_pahari
ENSPNAG00000001944	exosc1	98	79.058	MGP_SPRETEiJ_G0023880	Exosc1	98	79.058	Mus_spretus
ENSPNAG00000001944	exosc1	98	81.152	ENSMPUG00000017044	EXOSC1	98	81.152	Mustela_putorius_furo
ENSPNAG00000001944	exosc1	98	80.628	ENSMLUG00000009228	EXOSC1	98	80.628	Myotis_lucifugus
ENSPNAG00000001944	exosc1	98	78.010	ENSNGAG00000022033	Exosc1	98	78.010	Nannospalax_galili
ENSPNAG00000001944	exosc1	100	72.165	ENSNBRG00000024007	exosc1	99	72.165	Neolamprologus_brichardi
ENSPNAG00000001944	exosc1	98	80.105	ENSNLEG00000013872	EXOSC1	98	80.105	Nomascus_leucogenys
ENSPNAG00000001944	exosc1	58	73.214	ENSMEUG00000002246	EXOSC1	97	73.214	Notamacropus_eugenii
ENSPNAG00000001944	exosc1	98	80.105	ENSOPRG00000005065	EXOSC1	98	80.105	Ochotona_princeps
ENSPNAG00000001944	exosc1	98	81.675	ENSODEG00000016709	EXOSC1	98	81.675	Octodon_degus
ENSPNAG00000001944	exosc1	100	93.299	ENSONIG00000017683	exosc1	99	93.299	Oreochromis_niloticus
ENSPNAG00000001944	exosc1	68	91.228	ENSOANG00000006563	EXOSC1	98	87.805	Ornithorhynchus_anatinus
ENSPNAG00000001944	exosc1	98	79.167	ENSOCUG00000011898	-	98	79.167	Oryctolagus_cuniculus
ENSPNAG00000001944	exosc1	98	74.869	ENSOCUG00000026461	-	98	74.869	Oryctolagus_cuniculus
ENSPNAG00000001944	exosc1	100	86.154	ENSORLG00000011595	exosc1	100	86.154	Oryzias_latipes
ENSPNAG00000001944	exosc1	100	86.154	ENSORLG00020005831	exosc1	100	86.154	Oryzias_latipes_hni
ENSPNAG00000001944	exosc1	100	85.641	ENSORLG00015004317	exosc1	100	85.641	Oryzias_latipes_hsok
ENSPNAG00000001944	exosc1	100	72.680	ENSOMEG00000013907	exosc1	99	72.680	Oryzias_melastigma
ENSPNAG00000001944	exosc1	98	80.105	ENSOGAG00000016259	EXOSC1	98	80.105	Otolemur_garnettii
ENSPNAG00000001944	exosc1	98	80.628	ENSOARG00000010136	EXOSC1	98	80.628	Ovis_aries
ENSPNAG00000001944	exosc1	98	74.611	ENSPPAG00000039842	EXOSC1	98	74.611	Pan_paniscus
ENSPNAG00000001944	exosc1	98	81.152	ENSPPRG00000023366	EXOSC1	98	81.152	Panthera_pardus
ENSPNAG00000001944	exosc1	98	81.152	ENSPTIG00000017701	EXOSC1	98	81.152	Panthera_tigris_altaica
ENSPNAG00000001944	exosc1	98	80.628	ENSPTRG00000002808	EXOSC1	98	80.628	Pan_troglodytes
ENSPNAG00000001944	exosc1	98	80.628	ENSPANG00000021324	EXOSC1	98	80.628	Papio_anubis
ENSPNAG00000001944	exosc1	100	93.814	ENSPKIG00000016037	exosc1	100	93.814	Paramormyrops_kingsleyae
ENSPNAG00000001944	exosc1	91	65.263	ENSPSIG00000013571	EXOSC1	98	80.165	Pelodiscus_sinensis
ENSPNAG00000001944	exosc1	95	91.824	ENSPMGG00000014002	exosc1	94	91.824	Periophthalmus_magnuspinnatus
ENSPNAG00000001944	exosc1	98	79.581	ENSPEMG00000010710	-	98	79.581	Peromyscus_maniculatus_bairdii
ENSPNAG00000001944	exosc1	95	73.118	ENSPMAG00000000195	exosc1	95	73.118	Petromyzon_marinus
ENSPNAG00000001944	exosc1	98	80.628	ENSPCIG00000002210	EXOSC1	97	80.628	Phascolarctos_cinereus
ENSPNAG00000001944	exosc1	100	84.536	ENSPFOG00000006755	exosc1	95	84.536	Poecilia_formosa
ENSPNAG00000001944	exosc1	100	84.536	ENSPLAG00000005880	exosc1	100	84.536	Poecilia_latipinna
ENSPNAG00000001944	exosc1	100	84.536	ENSPMEG00000015598	exosc1	95	84.536	Poecilia_mexicana
ENSPNAG00000001944	exosc1	98	82.530	ENSPREG00000000405	exosc1	93	82.530	Poecilia_reticulata
ENSPNAG00000001944	exosc1	98	80.628	ENSPPYG00000002531	EXOSC1	98	80.628	Pongo_abelii
ENSPNAG00000001944	exosc1	98	79.581	ENSPCAG00000009135	EXOSC1	98	79.581	Procavia_capensis
ENSPNAG00000001944	exosc1	98	74.346	ENSPCOG00000027539	EXOSC1	98	74.346	Propithecus_coquereli
ENSPNAG00000001944	exosc1	98	80.628	ENSPVAG00000003372	EXOSC1	98	80.628	Pteropus_vampyrus
ENSPNAG00000001944	exosc1	100	93.299	ENSPNYG00000021745	exosc1	100	93.299	Pundamilia_nyererei
ENSPNAG00000001944	exosc1	98	79.581	ENSRNOG00000048708	Exosc1	98	79.581	Rattus_norvegicus
ENSPNAG00000001944	exosc1	98	80.628	ENSRBIG00000035618	EXOSC1	98	80.628	Rhinopithecus_bieti
ENSPNAG00000001944	exosc1	98	80.628	ENSRROG00000032589	EXOSC1	99	79.167	Rhinopithecus_roxellana
ENSPNAG00000001944	exosc1	57	48.980	YNL232W	CSL4	55	37.423	Saccharomyces_cerevisiae
ENSPNAG00000001944	exosc1	99	79.762	ENSSBOG00000000359	EXOSC1	99	79.762	Saimiri_boliviensis_boliviensis
ENSPNAG00000001944	exosc1	75	88.356	ENSSHAG00000018219	EXOSC1	99	88.356	Sarcophilus_harrisii
ENSPNAG00000001944	exosc1	100	93.299	ENSSFOG00015009069	exosc1	100	93.299	Scleropages_formosus
ENSPNAG00000001944	exosc1	100	90.722	ENSSFOG00015016289	-	100	90.722	Scleropages_formosus
ENSPNAG00000001944	exosc1	100	93.299	ENSSMAG00000003721	exosc1	100	93.299	Scophthalmus_maximus
ENSPNAG00000001944	exosc1	100	92.784	ENSSDUG00000002993	exosc1	100	92.784	Seriola_dumerili
ENSPNAG00000001944	exosc1	100	92.784	ENSSLDG00000025181	exosc1	100	92.784	Seriola_lalandi_dorsalis
ENSPNAG00000001944	exosc1	99	69.430	ENSSARG00000000162	EXOSC1	99	69.430	Sorex_araneus
ENSPNAG00000001944	exosc1	98	76.440	ENSSPUG00000012263	EXOSC1	98	76.440	Sphenodon_punctatus
ENSPNAG00000001944	exosc1	100	84.536	ENSSPAG00000016792	exosc1	83	84.536	Stegastes_partitus
ENSPNAG00000001944	exosc1	98	80.105	ENSSSCG00000010518	EXOSC1	89	80.105	Sus_scrofa
ENSPNAG00000001944	exosc1	98	78.534	ENSTGUG00000009692	EXOSC1	98	78.534	Taeniopygia_guttata
ENSPNAG00000001944	exosc1	98	79.474	ENSTRUG00000007706	exosc1	98	79.474	Takifugu_rubripes
ENSPNAG00000001944	exosc1	98	79.793	ENSTNIG00000014079	exosc1	97	79.793	Tetraodon_nigroviridis
ENSPNAG00000001944	exosc1	98	74.869	ENSTBEG00000006011	EXOSC1	98	74.869	Tupaia_belangeri
ENSPNAG00000001944	exosc1	94	82.514	ENSTTRG00000009887	EXOSC1	99	82.514	Tursiops_truncatus
ENSPNAG00000001944	exosc1	98	64.921	ENSUAMG00000010266	EXOSC1	98	64.921	Ursus_americanus
ENSPNAG00000001944	exosc1	98	64.921	ENSUMAG00000022002	EXOSC1	98	64.921	Ursus_maritimus
ENSPNAG00000001944	exosc1	98	80.628	ENSVVUG00000023192	EXOSC1	62	80.628	Vulpes_vulpes
ENSPNAG00000001944	exosc1	99	78.238	ENSXETG00000003434	exosc1	99	78.238	Xenopus_tropicalis
ENSPNAG00000001944	exosc1	72	89.256	ENSXCOG00000014499	exosc1	93	89.256	Xiphophorus_couchianus
ENSPNAG00000001944	exosc1	100	81.765	ENSXMAG00000023382	exosc1	95	81.765	Xiphophorus_maculatus