EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000003227 (Gene tree)
Gene ID: 108443006
Gene Symbol: rab3c
Alias: zgc:92916
Full Name: RAB3C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 7623 bases
Position: chrKV575803.1:339268-346890
Accession: 108443006
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000009170	MMR_HSR1	PF01926.23	3.8e-05	1	1
ENSPNAP00000028863	MMR_HSR1	PF01926.23	4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000015433	-	1614	XM_017723373	ENSPNAP00000028863	224 (aa)	XP_017578862	UPI000814777D
ENSPNAT00000015438	-	1744	XM_017723374	ENSPNAP00000009170	218 (aa)	XP_017578863	UPI0008148334

Gene Model

Click here to download ENSPNAG00000003227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000003227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000003227	rab3c	91	36.139	ENSPNAG00000017856	zgc:101559	65	42.282
ENSPNAG00000003227	rab3c	91	39.196	ENSPNAG00000021737	rab41	92	38.500
ENSPNAG00000003227	rab3c	71	40.260	ENSPNAG00000028138	rab5c	70	40.260
ENSPNAG00000003227	rab3c	89	45.408	ENSPNAG00000029574	zgc:171927	86	47.222
ENSPNAG00000003227	rab3c	93	44.059	ENSPNAG00000012540	-	84	49.412
ENSPNAG00000003227	rab3c	78	55.882	ENSPNAG00000004189	rab13	90	55.882
ENSPNAG00000003227	rab3c	93	45.050	ENSPNAG00000013004	rab1ba	98	45.050
ENSPNAG00000003227	rab3c	77	38.690	ENSPNAG00000002218	-	79	38.690
ENSPNAG00000003227	rab3c	75	33.742	ENSPNAG00000024728	rab23	77	34.591
ENSPNAG00000003227	rab3c	80	47.429	ENSPNAG00000014046	-	87	47.429
ENSPNAG00000003227	rab3c	91	33.171	ENSPNAG00000015164	-	78	35.802
ENSPNAG00000003227	rab3c	71	38.961	ENSPNAG00000015161	rab22a	80	38.217
ENSPNAG00000003227	rab3c	91	45.050	ENSPNAG00000013863	rab1ab	89	45.226
ENSPNAG00000003227	rab3c	75	33.333	ENSPNAG00000017938	RAB9A	77	33.333
ENSPNAG00000003227	rab3c	91	34.975	ENSPNAG00000018132	rab9b	79	35.714
ENSPNAG00000003227	rab3c	91	38.889	ENSPNAG00000020475	rab11ba	91	38.889
ENSPNAG00000003227	rab3c	68	32.919	ENSPNAG00000015040	rab34b	76	32.105
ENSPNAG00000003227	rab3c	90	36.735	ENSPNAG00000023223	rab5aa	71	42.857
ENSPNAG00000003227	rab3c	72	36.420	ENSPNAG00000020583	zgc:100918	79	36.420
ENSPNAG00000003227	rab3c	91	38.424	ENSPNAG00000000694	rab25a	83	39.655
ENSPNAG00000003227	rab3c	67	37.584	ENSPNAG00000029115	rab33ba	67	37.584
ENSPNAG00000003227	rab3c	73	50.625	ENSPNAG00000018986	si:dkey-16l2.16	76	50.625
ENSPNAG00000003227	rab3c	67	30.128	ENSPNAG00000007710	rasl11a	61	30.128
ENSPNAG00000003227	rab3c	74	48.765	ENSPNAG00000002404	rab18b	79	48.765
ENSPNAG00000003227	rab3c	77	46.707	ENSPNAG00000015810	RAB15	81	46.707
ENSPNAG00000003227	rab3c	92	39.500	ENSPNAG00000006431	-	92	39.500
ENSPNAG00000003227	rab3c	66	32.639	ENSPNAG00000028497	si:cabz01085950.1	70	32.639
ENSPNAG00000003227	rab3c	91	38.191	ENSPNAG00000005519	-	75	43.312
ENSPNAG00000003227	rab3c	77	47.904	ENSPNAG00000011215	rab15	79	47.904
ENSPNAG00000003227	rab3c	67	34.667	ENSPNAG00000014146	-	70	34.667
ENSPNAG00000003227	rab3c	93	36.150	ENSPNAG00000014363	-	97	34.742
ENSPNAG00000003227	rab3c	78	31.818	ENSPNAG00000007277	RAB9A	83	31.818
ENSPNAG00000003227	rab3c	93	37.500	ENSPNAG00000014863	rab11a	77	43.030
ENSPNAG00000003227	rab3c	73	30.247	ENSPNAG00000003179	rab34a	63	30.247
ENSPNAG00000003227	rab3c	91	38.191	ENSPNAG00000028379	rab6ba	94	37.500
ENSPNAG00000003227	rab3c	72	33.962	ENSPNAG00000014085	hrasa	83	33.962
ENSPNAG00000003227	rab3c	74	31.288	ENSPNAG00000026295	si:ch73-116o1.2	78	31.288
ENSPNAG00000003227	rab3c	91	44.279	ENSPNAG00000011548	rab18a	96	43.284
ENSPNAG00000003227	rab3c	77	33.526	ENSPNAG00000025619	dnajc27	62	33.526
ENSPNAG00000003227	rab3c	74	33.537	ENSPNAG00000021994	rab36	63	33.537
ENSPNAG00000003227	rab3c	72	33.962	ENSPNAG00000000584	hrasb	83	33.962
ENSPNAG00000003227	rab3c	77	41.071	ENSPNAG00000029085	rab11al	78	41.071
ENSPNAG00000003227	rab3c	73	44.720	ENSPNAG00000013589	rab39bb	76	44.720
ENSPNAG00000003227	rab3c	73	45.342	ENSPNAG00000013897	rab39ba	76	45.342
ENSPNAG00000003227	rab3c	72	33.962	ENSPNAG00000028629	kras	83	33.962
ENSPNAG00000003227	rab3c	94	37.799	ENSPNAG00000006569	rab25b	97	36.893
ENSPNAG00000003227	rab3c	82	47.222	ENSPNAG00000015031	rab12	90	41.126
ENSPNAG00000003227	rab3c	91	34.466	ENSPNAG00000017466	rab38b	85	35.556
ENSPNAG00000003227	rab3c	74	43.558	ENSPNAG00000016567	rab42a	77	43.558
ENSPNAG00000003227	rab3c	72	42.405	ENSPNAG00000011193	rab2a	75	42.405
ENSPNAG00000003227	rab3c	81	42.045	ENSPNAG00000010760	rab30	86	42.045
ENSPNAG00000003227	rab3c	99	35.747	ENSPNAG00000009496	rab5ab	81	39.888
ENSPNAG00000003227	rab3c	91	34.951	ENSPNAG00000016600	-	78	37.037
ENSPNAG00000003227	rab3c	72	32.911	ENSPNAG00000004728	rheb	85	32.911
ENSPNAG00000003227	rab3c	91	40.201	ENSPNAG00000010157	rab6bb	94	39.000
ENSPNAG00000003227	rab3c	82	42.458	ENSPNAG00000021675	-	83	42.458

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000003227	rab3c	100	86.239	ENSAMXG00000042419	rab3c	100	86.239	Astyanax_mexicanus
ENSPNAG00000003227	rab3c	71	84.076	ENSMLEG00000030130	RAB3C	96	83.544	Mandrillus_leucophaeus
ENSPNAG00000003227	rab3c	71	84.076	ENSRROG00000030997	RAB3C	96	83.544	Rhinopithecus_roxellana