EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000003721 (Gene tree)
Gene ID: 108412103
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 15202 bases
Position: chrKV576189.1:44512-59713
Accession: 108412103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000033585	PRP21_like_P	PF12230.8	2.6e-52	1	1
ENSPNAP00000016215	PRP21_like_P	PF12230.8	2.7e-52	1	1
ENSPNAP00000016215	Surp	PF01805.20	8.4e-46	1	2
ENSPNAP00000016215	Surp	PF01805.20	8.4e-46	2	2
ENSPNAP00000033585	Surp	PF01805.20	3.5e-45	1	2
ENSPNAP00000033585	Surp	PF01805.20	3.5e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000024640	-	3421	XM_017684003	ENSPNAP00000016215	785 (aa)	XP_017539492	UPI0008144F9D
ENSPNAT00000038044	-	2322	-	ENSPNAP00000033585	773 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000003721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000003721's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000003721	sf3a1	98	85.826	ENSG00000099995	SF3A1	96	85.436	Homo_sapiens
ENSPNAG00000003721	sf3a1	99	89.682	ENSAPOG00000020465	sf3a1	99	89.936	Acanthochromis_polyacanthus
ENSPNAG00000003721	sf3a1	98	85.306	ENSAMEG00000007737	SF3A1	99	83.143	Ailuropoda_melanoleuca
ENSPNAG00000003721	sf3a1	99	89.427	ENSACIG00000020672	sf3a1	99	89.682	Amphilophus_citrinellus
ENSPNAG00000003721	sf3a1	99	89.682	ENSAOCG00000003060	sf3a1	99	89.936	Amphiprion_ocellaris
ENSPNAG00000003721	sf3a1	99	89.554	ENSAPEG00000010735	sf3a1	99	89.809	Amphiprion_percula
ENSPNAG00000003721	sf3a1	98	89.740	ENSATEG00000021201	sf3a1	98	88.790	Anabas_testudineus
ENSPNAG00000003721	sf3a1	97	84.100	ENSAPLG00000009057	SF3A1	99	83.571	Anas_platyrhynchos
ENSPNAG00000003721	sf3a1	100	80.721	ENSACAG00000009415	SF3A1	99	80.124	Anolis_carolinensis
ENSPNAG00000003721	sf3a1	98	85.046	ENSANAG00000032045	SF3A1	96	85.176	Aotus_nancymaae
ENSPNAG00000003721	sf3a1	99	87.771	ENSACLG00000012622	sf3a1	99	87.643	Astatotilapia_calliptera
ENSPNAG00000003721	sf3a1	100	95.547	ENSAMXG00000005382	sf3a1	100	95.547	Astyanax_mexicanus
ENSPNAG00000003721	sf3a1	99	84.596	ENSBTAG00000003390	SF3A1	97	83.825	Bos_taurus
ENSPNAG00000003721	sf3a1	85	43.986	WBGene00004188	prp-21	93	43.316	Caenorhabditis_elegans
ENSPNAG00000003721	sf3a1	98	85.176	ENSCJAG00000010370	SF3A1	96	85.306	Callithrix_jacchus
ENSPNAG00000003721	sf3a1	99	84.596	ENSCAFG00000012559	SF3A1	97	83.825	Canis_familiaris
ENSPNAG00000003721	sf3a1	99	84.596	ENSCAFG00020000838	SF3A1	97	83.825	Canis_lupus_dingo
ENSPNAG00000003721	sf3a1	99	84.467	ENSCHIG00000018642	SF3A1	97	83.697	Capra_hircus
ENSPNAG00000003721	sf3a1	99	84.467	ENSTSYG00000004739	SF3A1	97	83.697	Carlito_syrichta
ENSPNAG00000003721	sf3a1	96	68.568	ENSCAPG00000015414	SF3A1	98	67.925	Cavia_aperea
ENSPNAG00000003721	sf3a1	98	85.826	ENSCPOG00000014589	SF3A1	99	83.227	Cavia_porcellus
ENSPNAG00000003721	sf3a1	98	85.046	ENSCCAG00000032006	SF3A1	96	85.176	Cebus_capucinus
ENSPNAG00000003721	sf3a1	99	84.596	ENSCATG00000029241	SF3A1	97	84.724	Cercocebus_atys
ENSPNAG00000003721	sf3a1	98	85.306	ENSCLAG00000006508	SF3A1	96	84.655	Chinchilla_lanigera
ENSPNAG00000003721	sf3a1	98	85.306	ENSCSAG00000009470	SF3A1	98	84.097	Chlorocebus_sabaeus
ENSPNAG00000003721	sf3a1	59	89.773	ENSCHOG00000005201	SF3A1	65	90.530	Choloepus_hoffmanni
ENSPNAG00000003721	sf3a1	99	82.174	ENSCPBG00000007595	SF3A1	99	81.922	Chrysemys_picta_bellii
ENSPNAG00000003721	sf3a1	98	52.725	ENSCING00000008526	-	98	52.000	Ciona_intestinalis
ENSPNAG00000003721	sf3a1	92	64.035	ENSCSAVG00000005608	-	99	64.286	Ciona_savignyi
ENSPNAG00000003721	sf3a1	98	85.306	ENSCANG00000033564	SF3A1	98	84.097	Colobus_angolensis_palliatus
ENSPNAG00000003721	sf3a1	97	84.273	ENSCGRG00001008933	Sf3a1	96	84.265	Cricetulus_griseus_chok1gshd
ENSPNAG00000003721	sf3a1	97	84.273	ENSCGRG00000006127	Sf3a1	96	84.265	Cricetulus_griseus_crigri
ENSPNAG00000003721	sf3a1	99	87.421	ENSCSEG00000010792	sf3a1	99	87.421	Cynoglossus_semilaevis
ENSPNAG00000003721	sf3a1	99	86.514	ENSCVAG00000004560	sf3a1	99	86.641	Cyprinodon_variegatus
ENSPNAG00000003721	sf3a1	99	91.071	ENSDARG00000041887	sf3a1	99	90.689	Danio_rerio
ENSPNAG00000003721	sf3a1	99	84.359	ENSDNOG00000010629	SF3A1	98	83.949	Dasypus_novemcinctus
ENSPNAG00000003721	sf3a1	99	84.981	ENSDORG00000005613	Sf3a1	97	83.697	Dipodomys_ordii
ENSPNAG00000003721	sf3a1	66	60.656	FBgn0266917	Sf3a1	70	59.180	Drosophila_melanogaster
ENSPNAG00000003721	sf3a1	85	83.929	ENSETEG00000017194	SF3A1	95	84.375	Echinops_telfairi
ENSPNAG00000003721	sf3a1	99	66.220	ENSEBUG00000001285	sf3a1	96	68.434	Eptatretus_burgeri
ENSPNAG00000003721	sf3a1	98	85.306	ENSEASG00005010254	SF3A1	98	83.206	Equus_asinus_asinus
ENSPNAG00000003721	sf3a1	98	85.306	ENSECAG00000023962	SF3A1	98	83.206	Equus_caballus
ENSPNAG00000003721	sf3a1	74	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSPNAG00000003721	sf3a1	99	86.294	ENSELUG00000022578	sf3a1	99	86.802	Esox_lucius
ENSPNAG00000003721	sf3a1	99	84.724	ENSFCAG00000011932	SF3A1	97	83.954	Felis_catus
ENSPNAG00000003721	sf3a1	97	83.289	ENSFALG00000006944	SF3A1	99	82.107	Ficedula_albicollis
ENSPNAG00000003721	sf3a1	99	84.596	ENSFDAG00000009560	SF3A1	97	83.825	Fukomys_damarensis
ENSPNAG00000003721	sf3a1	99	87.277	ENSFHEG00000010866	sf3a1	99	87.405	Fundulus_heteroclitus
ENSPNAG00000003721	sf3a1	99	86.369	ENSGMOG00000016024	sf3a1	99	85.227	Gadus_morhua
ENSPNAG00000003721	sf3a1	97	84.211	ENSGALG00000007937	SF3A1	99	82.719	Gallus_gallus
ENSPNAG00000003721	sf3a1	99	86.768	ENSGAFG00000009111	sf3a1	99	87.023	Gambusia_affinis
ENSPNAG00000003721	sf3a1	99	85.714	ENSGACG00000011893	sf3a1	99	84.567	Gasterosteus_aculeatus
ENSPNAG00000003721	sf3a1	95	81.891	ENSGAGG00000000762	SF3A1	98	81.758	Gopherus_agassizii
ENSPNAG00000003721	sf3a1	98	85.826	ENSGGOG00000012631	SF3A1	96	85.436	Gorilla_gorilla
ENSPNAG00000003721	sf3a1	99	87.898	ENSHBUG00000015795	sf3a1	99	87.643	Haplochromis_burtoni
ENSPNAG00000003721	sf3a1	99	84.596	ENSHGLG00000007907	SF3A1	99	83.227	Heterocephalus_glaber_female
ENSPNAG00000003721	sf3a1	99	84.596	ENSHGLG00100013799	SF3A1	99	83.227	Heterocephalus_glaber_male
ENSPNAG00000003721	sf3a1	99	86.115	ENSHCOG00000015423	sf3a1	99	85.223	Hippocampus_comes
ENSPNAG00000003721	sf3a1	99	91.602	ENSIPUG00000002470	sf3a1	99	91.473	Ictalurus_punctatus
ENSPNAG00000003721	sf3a1	98	85.306	ENSSTOG00000013892	SF3A1	96	84.525	Ictidomys_tridecemlineatus
ENSPNAG00000003721	sf3a1	99	84.665	ENSJJAG00000022566	Sf3a1	99	82.995	Jaculus_jaculus
ENSPNAG00000003721	sf3a1	99	87.771	ENSKMAG00000002400	sf3a1	99	87.898	Kryptolebias_marmoratus
ENSPNAG00000003721	sf3a1	99	87.134	ENSLBEG00000022974	sf3a1	99	86.879	Labrus_bergylta
ENSPNAG00000003721	sf3a1	99	83.544	ENSLACG00000003565	SF3A1	99	83.165	Latimeria_chalumnae
ENSPNAG00000003721	sf3a1	99	88.408	ENSLOCG00000008251	sf3a1	99	88.790	Lepisosteus_oculatus
ENSPNAG00000003721	sf3a1	98	56.684	ENSLAFG00000026032	-	97	54.672	Loxodonta_africana
ENSPNAG00000003721	sf3a1	99	84.596	ENSLAFG00000000448	SF3A1	97	84.596	Loxodonta_africana
ENSPNAG00000003721	sf3a1	98	85.176	ENSMFAG00000031979	SF3A1	98	83.969	Macaca_fascicularis
ENSPNAG00000003721	sf3a1	98	85.176	ENSMMUG00000005547	SF3A1	98	83.969	Macaca_mulatta
ENSPNAG00000003721	sf3a1	98	85.046	ENSMNEG00000037229	SF3A1	98	83.842	Macaca_nemestrina
ENSPNAG00000003721	sf3a1	98	85.306	ENSMLEG00000041908	SF3A1	98	84.097	Mandrillus_leucophaeus
ENSPNAG00000003721	sf3a1	98	90.026	ENSMAMG00000006460	sf3a1	96	90.285	Mastacembelus_armatus
ENSPNAG00000003721	sf3a1	99	87.771	ENSMZEG00005009633	sf3a1	99	87.643	Maylandia_zebra
ENSPNAG00000003721	sf3a1	97	84.211	ENSMGAG00000001330	SF3A1	99	83.679	Meleagris_gallopavo
ENSPNAG00000003721	sf3a1	94	80.190	ENSMAUG00000020317	Sf3a1	94	80.828	Mesocricetus_auratus
ENSPNAG00000003721	sf3a1	99	84.467	ENSMICG00000010038	SF3A1	97	84.596	Microcebus_murinus
ENSPNAG00000003721	sf3a1	99	83.440	ENSMOCG00000008438	Sf3a1	96	84.395	Microtus_ochrogaster
ENSPNAG00000003721	sf3a1	99	86.097	ENSMMOG00000015588	sf3a1	98	86.607	Mola_mola
ENSPNAG00000003721	sf3a1	99	83.892	ENSMODG00000009270	SF3A1	98	82.781	Monodelphis_domestica
ENSPNAG00000003721	sf3a1	99	88.818	ENSMALG00000000148	sf3a1	99	89.688	Monopterus_albus
ENSPNAG00000003721	sf3a1	99	83.312	MGP_CAROLIEiJ_G0016029	Sf3a1	98	82.824	Mus_caroli
ENSPNAG00000003721	sf3a1	99	83.312	ENSMUSG00000002129	Sf3a1	98	82.824	Mus_musculus
ENSPNAG00000003721	sf3a1	99	83.184	MGP_PahariEiJ_G0016862	Sf3a1	98	82.697	Mus_pahari
ENSPNAG00000003721	sf3a1	99	83.312	MGP_SPRETEiJ_G0016870	Sf3a1	98	82.824	Mus_spretus
ENSPNAG00000003721	sf3a1	99	84.467	ENSMPUG00000013144	SF3A1	97	83.954	Mustela_putorius_furo
ENSPNAG00000003721	sf3a1	99	84.596	ENSMLUG00000002139	SF3A1	98	83.333	Myotis_lucifugus
ENSPNAG00000003721	sf3a1	98	85.696	ENSNGAG00000016977	Sf3a1	96	84.395	Nannospalax_galili
ENSPNAG00000003721	sf3a1	99	87.294	ENSNBRG00000016642	sf3a1	99	87.039	Neolamprologus_brichardi
ENSPNAG00000003721	sf3a1	98	85.306	ENSNLEG00000003686	SF3A1	98	84.097	Nomascus_leucogenys
ENSPNAG00000003721	sf3a1	95	76.178	ENSMEUG00000008741	SF3A1	98	74.567	Notamacropus_eugenii
ENSPNAG00000003721	sf3a1	98	84.994	ENSOPRG00000016636	SF3A1	97	84.724	Ochotona_princeps
ENSPNAG00000003721	sf3a1	99	84.556	ENSODEG00000002571	SF3A1	98	84.204	Octodon_degus
ENSPNAG00000003721	sf3a1	99	87.898	ENSONIG00000010848	sf3a1	99	87.643	Oreochromis_niloticus
ENSPNAG00000003721	sf3a1	99	84.407	ENSOCUG00000007633	SF3A1	99	82.846	Oryctolagus_cuniculus
ENSPNAG00000003721	sf3a1	96	86.818	ENSORLG00000013050	sf3a1	99	86.818	Oryzias_latipes
ENSPNAG00000003721	sf3a1	96	86.818	ENSORLG00020003236	sf3a1	94	86.818	Oryzias_latipes_hni
ENSPNAG00000003721	sf3a1	99	86.862	ENSORLG00015017411	sf3a1	99	87.117	Oryzias_latipes_hsok
ENSPNAG00000003721	sf3a1	99	87.372	ENSOMEG00000013362	sf3a1	99	87.245	Oryzias_melastigma
ENSPNAG00000003721	sf3a1	99	84.339	ENSOGAG00000012931	SF3A1	97	83.569	Otolemur_garnettii
ENSPNAG00000003721	sf3a1	99	83.440	ENSOARG00000006849	SF3A1	97	82.927	Ovis_aries
ENSPNAG00000003721	sf3a1	98	84.525	ENSPPAG00000041790	SF3A1	96	84.109	Pan_paniscus
ENSPNAG00000003721	sf3a1	99	84.724	ENSPPRG00000004391	SF3A1	97	83.954	Panthera_pardus
ENSPNAG00000003721	sf3a1	98	85.306	ENSPTIG00000000844	SF3A1	99	84.525	Panthera_tigris_altaica
ENSPNAG00000003721	sf3a1	98	85.826	ENSPTRG00000014240	SF3A1	96	85.436	Pan_troglodytes
ENSPNAG00000003721	sf3a1	98	85.306	ENSPANG00000020772	SF3A1	98	84.097	Papio_anubis
ENSPNAG00000003721	sf3a1	79	93.407	ENSPSIG00000012803	SF3A1	99	93.407	Pelodiscus_sinensis
ENSPNAG00000003721	sf3a1	98	85.156	ENSPMGG00000023096	sf3a1	100	85.938	Periophthalmus_magnuspinnatus
ENSPNAG00000003721	sf3a1	97	84.404	ENSPEMG00000009494	Sf3a1	96	84.395	Peromyscus_maniculatus_bairdii
ENSPNAG00000003721	sf3a1	65	81.553	ENSPMAG00000007139	-	91	78.584	Petromyzon_marinus
ENSPNAG00000003721	sf3a1	98	84.635	ENSPCIG00000022692	SF3A1	98	82.781	Phascolarctos_cinereus
ENSPNAG00000003721	sf3a1	99	77.962	ENSPFOG00000016768	sf3a1	99	77.962	Poecilia_formosa
ENSPNAG00000003721	sf3a1	99	87.532	ENSPLAG00000017268	sf3a1	99	87.913	Poecilia_latipinna
ENSPNAG00000003721	sf3a1	96	87.706	ENSPMEG00000019811	sf3a1	98	87.256	Poecilia_mexicana
ENSPNAG00000003721	sf3a1	99	87.532	ENSPREG00000010347	sf3a1	99	87.786	Poecilia_reticulata
ENSPNAG00000003721	sf3a1	98	85.306	ENSPPYG00000011707	SF3A1	98	84.097	Pongo_abelii
ENSPNAG00000003721	sf3a1	58	83.058	ENSPCAG00000003266	SF3A1	56	83.058	Procavia_capensis
ENSPNAG00000003721	sf3a1	99	84.467	ENSPCOG00000026630	SF3A1	97	84.596	Propithecus_coquereli
ENSPNAG00000003721	sf3a1	95	84.533	ENSPVAG00000017719	SF3A1	94	83.733	Pteropus_vampyrus
ENSPNAG00000003721	sf3a1	99	87.898	ENSPNYG00000018706	sf3a1	99	87.643	Pundamilia_nyererei
ENSPNAG00000003721	sf3a1	99	83.312	ENSRNOG00000005218	Sf3a1	98	82.952	Rattus_norvegicus
ENSPNAG00000003721	sf3a1	98	85.306	ENSRBIG00000032167	SF3A1	98	84.097	Rhinopithecus_bieti
ENSPNAG00000003721	sf3a1	98	85.306	ENSRROG00000044908	SF3A1	98	84.097	Rhinopithecus_roxellana
ENSPNAG00000003721	sf3a1	94	85.095	ENSSBOG00000021960	SF3A1	98	85.373	Saimiri_boliviensis_boliviensis
ENSPNAG00000003721	sf3a1	99	80.799	ENSSHAG00000003666	SF3A1	98	80.928	Sarcophilus_harrisii
ENSPNAG00000003721	sf3a1	99	91.094	ENSSFOG00015004579	sf3a1	99	91.603	Scleropages_formosus
ENSPNAG00000003721	sf3a1	99	85.478	ENSSMAG00000004275	sf3a1	99	86.497	Scophthalmus_maximus
ENSPNAG00000003721	sf3a1	99	89.172	ENSSDUG00000022219	sf3a1	99	88.917	Seriola_dumerili
ENSPNAG00000003721	sf3a1	99	89.172	ENSSLDG00000012642	sf3a1	99	88.917	Seriola_lalandi_dorsalis
ENSPNAG00000003721	sf3a1	98	82.575	ENSSARG00000005960	SF3A1	99	82.185	Sorex_araneus
ENSPNAG00000003721	sf3a1	97	83.377	ENSSPUG00000018863	SF3A1	99	81.258	Sphenodon_punctatus
ENSPNAG00000003721	sf3a1	99	89.554	ENSSPAG00000011856	sf3a1	99	89.299	Stegastes_partitus
ENSPNAG00000003721	sf3a1	99	84.467	ENSSSCG00000010002	SF3A1	97	83.825	Sus_scrofa
ENSPNAG00000003721	sf3a1	97	84.121	ENSTGUG00000010547	SF3A1	99	83.592	Taeniopygia_guttata
ENSPNAG00000003721	sf3a1	99	86.607	ENSTRUG00000006118	sf3a1	99	85.714	Takifugu_rubripes
ENSPNAG00000003721	sf3a1	58	86.667	ENSTNIG00000005713	sf3a1	89	90.265	Tetraodon_nigroviridis
ENSPNAG00000003721	sf3a1	98	78.804	ENSTBEG00000012771	SF3A1	96	78.934	Tupaia_belangeri
ENSPNAG00000003721	sf3a1	99	84.724	ENSTTRG00000001535	SF3A1	97	83.697	Tursiops_truncatus
ENSPNAG00000003721	sf3a1	98	83.829	ENSUAMG00000006750	SF3A1	98	83.036	Ursus_americanus
ENSPNAG00000003721	sf3a1	98	85.306	ENSUMAG00000016665	SF3A1	99	83.825	Ursus_maritimus
ENSPNAG00000003721	sf3a1	99	84.596	ENSVVUG00000003075	SF3A1	97	83.825	Vulpes_vulpes
ENSPNAG00000003721	sf3a1	97	82.176	ENSXETG00000016144	sf3a1	95	85.306	Xenopus_tropicalis
ENSPNAG00000003721	sf3a1	99	86.641	ENSXCOG00000015653	sf3a1	99	86.896	Xiphophorus_couchianus
ENSPNAG00000003721	sf3a1	99	86.896	ENSXMAG00000002753	sf3a1	99	87.150	Xiphophorus_maculatus