EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000003736 (Gene tree)
Gene ID: 108430587
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 6887 bases
Position: chrKV575375.1:1295706-1302592
Accession: 108430587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000033871	zf-CCCH	PF00642.24	3.9e-20	1	2
ENSPNAP00000033871	zf-CCCH	PF00642.24	3.9e-20	2	2
ENSPNAP00000033871	zf-CCHC	PF00098.23	5.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000025160	-	4432	XM_017703167	ENSPNAP00000033871	270 (aa)	XP_017558656	UPI0008146379

Gene Model

Click here to download ENSPNAG00000003736's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000003736's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000003736	cpsf4	100	87.085	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSPNAG00000003736	cpsf4	67	75.824	ENSAPOG00000004921	cpsf4	100	75.824	Acanthochromis_polyacanthus
ENSPNAG00000003736	cpsf4	100	87.085	ENSAMEG00000006252	CPSF4	100	86.347	Ailuropoda_melanoleuca
ENSPNAG00000003736	cpsf4	100	81.852	ENSACIG00000009248	cpsf4	100	81.111	Amphilophus_citrinellus
ENSPNAG00000003736	cpsf4	100	85.556	ENSAOCG00000019616	cpsf4	100	85.556	Amphiprion_ocellaris
ENSPNAG00000003736	cpsf4	100	85.556	ENSAPEG00000011679	cpsf4	100	85.556	Amphiprion_percula
ENSPNAG00000003736	cpsf4	100	85.978	ENSATEG00000007010	cpsf4	100	85.978	Anabas_testudineus
ENSPNAG00000003736	cpsf4	100	84.074	ENSACAG00000012941	CPSF4	89	84.074	Anolis_carolinensis
ENSPNAG00000003736	cpsf4	100	87.085	ENSANAG00000021360	CPSF4	100	86.347	Aotus_nancymaae
ENSPNAG00000003736	cpsf4	100	85.556	ENSACLG00000010374	cpsf4	100	85.556	Astatotilapia_calliptera
ENSPNAG00000003736	cpsf4	100	91.852	ENSAMXG00000031647	cpsf4	100	91.852	Astyanax_mexicanus
ENSPNAG00000003736	cpsf4	100	81.481	ENSBTAG00000002090	CPSF4	100	81.111	Bos_taurus
ENSPNAG00000003736	cpsf4	100	87.085	ENSCJAG00000015826	CPSF4	100	86.347	Callithrix_jacchus
ENSPNAG00000003736	cpsf4	100	87.085	ENSCAFG00000015036	CPSF4	99	88.623	Canis_familiaris
ENSPNAG00000003736	cpsf4	100	81.919	ENSCAFG00020014462	CPSF4	100	81.181	Canis_lupus_dingo
ENSPNAG00000003736	cpsf4	100	87.085	ENSCHIG00000014313	CPSF4	100	86.347	Capra_hircus
ENSPNAG00000003736	cpsf4	100	82.222	ENSTSYG00000005712	-	100	82.222	Carlito_syrichta
ENSPNAG00000003736	cpsf4	89	75.207	ENSTSYG00000008195	-	99	74.900	Carlito_syrichta
ENSPNAG00000003736	cpsf4	100	74.908	ENSTSYG00000014604	-	100	74.539	Carlito_syrichta
ENSPNAG00000003736	cpsf4	83	84.375	ENSCAPG00000013881	CPSF4	88	83.482	Cavia_aperea
ENSPNAG00000003736	cpsf4	100	81.852	ENSCPOG00000001783	CPSF4	100	81.852	Cavia_porcellus
ENSPNAG00000003736	cpsf4	100	87.085	ENSCCAG00000028291	CPSF4	100	86.347	Cebus_capucinus
ENSPNAG00000003736	cpsf4	100	87.085	ENSCATG00000038440	CPSF4	100	86.347	Cercocebus_atys
ENSPNAG00000003736	cpsf4	100	87.085	ENSCLAG00000007050	CPSF4	100	86.347	Chinchilla_lanigera
ENSPNAG00000003736	cpsf4	100	87.085	ENSCSAG00000017795	CPSF4	100	86.347	Chlorocebus_sabaeus
ENSPNAG00000003736	cpsf4	80	84.793	ENSCPBG00000020869	CPSF4	100	84.793	Chrysemys_picta_bellii
ENSPNAG00000003736	cpsf4	61	80.606	ENSCPBG00000010269	-	100	80.120	Chrysemys_picta_bellii
ENSPNAG00000003736	cpsf4	97	56.107	ENSCING00000021080	-	97	56.107	Ciona_intestinalis
ENSPNAG00000003736	cpsf4	96	54.035	ENSCSAVG00000011469	-	97	53.357	Ciona_savignyi
ENSPNAG00000003736	cpsf4	100	87.085	ENSCANG00000019384	CPSF4	100	86.347	Colobus_angolensis_palliatus
ENSPNAG00000003736	cpsf4	100	81.852	ENSCGRG00001024184	Cpsf4	100	81.852	Cricetulus_griseus_chok1gshd
ENSPNAG00000003736	cpsf4	100	87.085	ENSCGRG00000013892	Cpsf4	100	86.347	Cricetulus_griseus_crigri
ENSPNAG00000003736	cpsf4	100	85.926	ENSCSEG00000019055	cpsf4	100	85.926	Cynoglossus_semilaevis
ENSPNAG00000003736	cpsf4	100	86.296	ENSCVAG00000016528	cpsf4	100	86.296	Cyprinodon_variegatus
ENSPNAG00000003736	cpsf4	100	90.037	ENSDARG00000020217	cpsf4	100	89.299	Danio_rerio
ENSPNAG00000003736	cpsf4	100	87.085	ENSDNOG00000006344	CPSF4	100	86.347	Dasypus_novemcinctus
ENSPNAG00000003736	cpsf4	81	85.388	ENSDORG00000000742	Cpsf4	100	84.475	Dipodomys_ordii
ENSPNAG00000003736	cpsf4	100	54.515	FBgn0015621	Clp	99	54.915	Drosophila_melanogaster
ENSPNAG00000003736	cpsf4	69	95.758	ENSETEG00000002608	CPSF4	70	95.758	Echinops_telfairi
ENSPNAG00000003736	cpsf4	99	65.672	ENSEBUG00000012552	cpsf4	98	65.299	Eptatretus_burgeri
ENSPNAG00000003736	cpsf4	100	81.852	ENSEASG00005002487	CPSF4	100	81.852	Equus_asinus_asinus
ENSPNAG00000003736	cpsf4	100	87.085	ENSECAG00000007525	CPSF4	100	86.347	Equus_caballus
ENSPNAG00000003736	cpsf4	63	95.522	ENSEEUG00000002158	CPSF4	73	95.522	Erinaceus_europaeus
ENSPNAG00000003736	cpsf4	100	87.179	ENSELUG00000011481	cpsf4	100	87.179	Esox_lucius
ENSPNAG00000003736	cpsf4	100	87.085	ENSFCAG00000015070	CPSF4	100	86.347	Felis_catus
ENSPNAG00000003736	cpsf4	100	81.852	ENSFALG00000013799	CPSF4	100	79.630	Ficedula_albicollis
ENSPNAG00000003736	cpsf4	61	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSPNAG00000003736	cpsf4	90	85.306	ENSFDAG00000014092	CPSF4	100	84.490	Fukomys_damarensis
ENSPNAG00000003736	cpsf4	100	85.185	ENSFHEG00000010880	cpsf4	100	85.185	Fundulus_heteroclitus
ENSPNAG00000003736	cpsf4	100	82.418	ENSGMOG00000002330	cpsf4	100	82.051	Gadus_morhua
ENSPNAG00000003736	cpsf4	100	82.593	ENSGALG00000004714	CPSF4	100	80.812	Gallus_gallus
ENSPNAG00000003736	cpsf4	99	37.500	ENSGALG00000004441	-	98	34.896	Gallus_gallus
ENSPNAG00000003736	cpsf4	100	84.058	ENSGAFG00000010580	cpsf4	100	82.609	Gambusia_affinis
ENSPNAG00000003736	cpsf4	100	80.515	ENSGACG00000007792	cpsf4	100	80.147	Gasterosteus_aculeatus
ENSPNAG00000003736	cpsf4	100	87.037	ENSGAGG00000021835	CPSF4	100	87.037	Gopherus_agassizii
ENSPNAG00000003736	cpsf4	61	80.606	ENSGAGG00000020579	-	92	80.606	Gopherus_agassizii
ENSPNAG00000003736	cpsf4	100	87.085	ENSGGOG00000015131	CPSF4	100	86.347	Gorilla_gorilla
ENSPNAG00000003736	cpsf4	100	85.556	ENSHBUG00000013699	cpsf4	100	85.556	Haplochromis_burtoni
ENSPNAG00000003736	cpsf4	100	86.029	ENSHGLG00000017150	CPSF4	100	86.029	Heterocephalus_glaber_female
ENSPNAG00000003736	cpsf4	87	82.700	ENSHGLG00100009215	-	100	82.700	Heterocephalus_glaber_male
ENSPNAG00000003736	cpsf4	66	66.667	ENSHGLG00100017302	-	84	67.582	Heterocephalus_glaber_male
ENSPNAG00000003736	cpsf4	100	83.824	ENSHCOG00000004397	cpsf4	100	83.824	Hippocampus_comes
ENSPNAG00000003736	cpsf4	100	92.251	ENSIPUG00000017147	cpsf4	100	92.251	Ictalurus_punctatus
ENSPNAG00000003736	cpsf4	100	87.085	ENSSTOG00000001688	CPSF4	100	86.347	Ictidomys_tridecemlineatus
ENSPNAG00000003736	cpsf4	100	87.085	ENSJJAG00000019426	Cpsf4	100	86.347	Jaculus_jaculus
ENSPNAG00000003736	cpsf4	100	81.884	ENSKMAG00000015642	cpsf4	100	82.963	Kryptolebias_marmoratus
ENSPNAG00000003736	cpsf4	100	61.397	ENSLACG00000018470	-	100	61.397	Latimeria_chalumnae
ENSPNAG00000003736	cpsf4	100	85.240	ENSLACG00000010938	CPSF4	100	83.764	Latimeria_chalumnae
ENSPNAG00000003736	cpsf4	100	87.778	ENSLOCG00000004814	cpsf4	100	87.778	Lepisosteus_oculatus
ENSPNAG00000003736	cpsf4	100	87.454	ENSLAFG00000000159	CPSF4	100	86.716	Loxodonta_africana
ENSPNAG00000003736	cpsf4	100	87.085	ENSMFAG00000001462	CPSF4	100	86.347	Macaca_fascicularis
ENSPNAG00000003736	cpsf4	100	87.085	ENSMMUG00000019191	CPSF4	100	86.347	Macaca_mulatta
ENSPNAG00000003736	cpsf4	100	87.085	ENSMNEG00000032306	CPSF4	100	86.347	Macaca_nemestrina
ENSPNAG00000003736	cpsf4	100	87.085	ENSMLEG00000034721	CPSF4	100	86.347	Mandrillus_leucophaeus
ENSPNAG00000003736	cpsf4	100	85.926	ENSMAMG00000006244	cpsf4	100	85.926	Mastacembelus_armatus
ENSPNAG00000003736	cpsf4	100	85.556	ENSMZEG00005007515	cpsf4	100	85.556	Maylandia_zebra
ENSPNAG00000003736	cpsf4	87	80.085	ENSMGAG00000004235	CPSF4	100	78.390	Meleagris_gallopavo
ENSPNAG00000003736	cpsf4	100	87.085	ENSMAUG00000021253	Cpsf4	100	86.347	Mesocricetus_auratus
ENSPNAG00000003736	cpsf4	100	87.085	ENSMICG00000017429	CPSF4	100	86.347	Microcebus_murinus
ENSPNAG00000003736	cpsf4	100	87.085	ENSMOCG00000014901	Cpsf4	100	86.347	Microtus_ochrogaster
ENSPNAG00000003736	cpsf4	100	85.926	ENSMMOG00000001813	cpsf4	100	84.815	Mola_mola
ENSPNAG00000003736	cpsf4	100	87.407	ENSMODG00000001367	CPSF4	100	87.407	Monodelphis_domestica
ENSPNAG00000003736	cpsf4	100	84.815	ENSMALG00000012611	cpsf4	100	84.815	Monopterus_albus
ENSPNAG00000003736	cpsf4	100	87.085	MGP_CAROLIEiJ_G0028012	Cpsf4	100	86.347	Mus_caroli
ENSPNAG00000003736	cpsf4	100	87.085	ENSMUSG00000029625	Cpsf4	100	86.347	Mus_musculus
ENSPNAG00000003736	cpsf4	100	87.085	MGP_PahariEiJ_G0024581	Cpsf4	100	86.347	Mus_pahari
ENSPNAG00000003736	cpsf4	100	87.085	MGP_SPRETEiJ_G0029013	Cpsf4	100	86.347	Mus_spretus
ENSPNAG00000003736	cpsf4	100	87.085	ENSMPUG00000016508	CPSF4	100	86.347	Mustela_putorius_furo
ENSPNAG00000003736	cpsf4	87	78.814	ENSMLUG00000010980	CPSF4	100	78.814	Myotis_lucifugus
ENSPNAG00000003736	cpsf4	100	87.085	ENSNGAG00000001567	Cpsf4	100	86.347	Nannospalax_galili
ENSPNAG00000003736	cpsf4	91	84.959	ENSNBRG00000003943	cpsf4	98	84.959	Neolamprologus_brichardi
ENSPNAG00000003736	cpsf4	100	84.074	ENSNLEG00000011074	CPSF4	100	84.074	Nomascus_leucogenys
ENSPNAG00000003736	cpsf4	100	87.407	ENSMEUG00000006955	CPSF4	100	87.407	Notamacropus_eugenii
ENSPNAG00000003736	cpsf4	100	86.716	ENSOPRG00000013663	CPSF4	100	85.978	Ochotona_princeps
ENSPNAG00000003736	cpsf4	100	87.085	ENSODEG00000011181	-	100	86.347	Octodon_degus
ENSPNAG00000003736	cpsf4	100	66.788	ENSODEG00000009779	-	100	66.788	Octodon_degus
ENSPNAG00000003736	cpsf4	99	69.925	ENSODEG00000018283	-	91	69.173	Octodon_degus
ENSPNAG00000003736	cpsf4	100	85.556	ENSONIG00000008495	cpsf4	100	85.556	Oreochromis_niloticus
ENSPNAG00000003736	cpsf4	100	53.571	ENSOANG00000009568	-	100	53.214	Ornithorhynchus_anatinus
ENSPNAG00000003736	cpsf4	87	83.898	ENSOANG00000007729	CPSF4	100	83.898	Ornithorhynchus_anatinus
ENSPNAG00000003736	cpsf4	100	86.716	ENSOCUG00000002437	CPSF4	70	85.978	Oryctolagus_cuniculus
ENSPNAG00000003736	cpsf4	100	85.185	ENSORLG00000022798	cpsf4	100	85.185	Oryzias_latipes
ENSPNAG00000003736	cpsf4	100	85.185	ENSORLG00020008548	cpsf4	100	85.185	Oryzias_latipes_hni
ENSPNAG00000003736	cpsf4	100	84.815	ENSORLG00015019575	cpsf4	100	84.815	Oryzias_latipes_hsok
ENSPNAG00000003736	cpsf4	100	84.074	ENSOMEG00000005176	cpsf4	100	84.074	Oryzias_melastigma
ENSPNAG00000003736	cpsf4	100	87.085	ENSOGAG00000010884	CPSF4	100	86.347	Otolemur_garnettii
ENSPNAG00000003736	cpsf4	100	76.364	ENSOARG00000018668	CPSF4	100	76.364	Ovis_aries
ENSPNAG00000003736	cpsf4	100	87.085	ENSPPAG00000043355	CPSF4	100	86.347	Pan_paniscus
ENSPNAG00000003736	cpsf4	100	87.085	ENSPPRG00000003134	CPSF4	100	86.347	Panthera_pardus
ENSPNAG00000003736	cpsf4	90	86.066	ENSPTIG00000005604	CPSF4	90	85.246	Panthera_tigris_altaica
ENSPNAG00000003736	cpsf4	100	87.085	ENSPTRG00000019453	CPSF4	100	86.347	Pan_troglodytes
ENSPNAG00000003736	cpsf4	100	87.085	ENSPANG00000023123	CPSF4	100	86.347	Papio_anubis
ENSPNAG00000003736	cpsf4	100	86.594	ENSPKIG00000014278	cpsf4	100	86.594	Paramormyrops_kingsleyae
ENSPNAG00000003736	cpsf4	80	84.332	ENSPSIG00000011229	CPSF4	100	84.332	Pelodiscus_sinensis
ENSPNAG00000003736	cpsf4	81	58.182	ENSPSIG00000018198	-	100	58.182	Pelodiscus_sinensis
ENSPNAG00000003736	cpsf4	100	75.556	ENSPMGG00000017735	cpsf4	100	74.815	Periophthalmus_magnuspinnatus
ENSPNAG00000003736	cpsf4	100	87.085	ENSPEMG00000004508	Cpsf4	100	86.347	Peromyscus_maniculatus_bairdii
ENSPNAG00000003736	cpsf4	100	87.407	ENSPCIG00000024776	CPSF4	100	87.407	Phascolarctos_cinereus
ENSPNAG00000003736	cpsf4	100	84.058	ENSPFOG00000014912	cpsf4	100	82.609	Poecilia_formosa
ENSPNAG00000003736	cpsf4	100	77.174	ENSPLAG00000009599	cpsf4	100	77.174	Poecilia_latipinna
ENSPNAG00000003736	cpsf4	100	84.058	ENSPMEG00000009790	cpsf4	100	82.609	Poecilia_mexicana
ENSPNAG00000003736	cpsf4	100	83.696	ENSPREG00000018166	cpsf4	100	82.246	Poecilia_reticulata
ENSPNAG00000003736	cpsf4	87	85.169	ENSPPYG00000017378	CPSF4	100	84.322	Pongo_abelii
ENSPNAG00000003736	cpsf4	100	86.716	ENSPCAG00000001892	CPSF4	100	85.978	Procavia_capensis
ENSPNAG00000003736	cpsf4	100	87.085	ENSPCOG00000012771	CPSF4	100	86.347	Propithecus_coquereli
ENSPNAG00000003736	cpsf4	100	81.550	ENSPVAG00000007531	CPSF4	100	80.812	Pteropus_vampyrus
ENSPNAG00000003736	cpsf4	100	85.556	ENSPNYG00000018559	cpsf4	100	85.556	Pundamilia_nyererei
ENSPNAG00000003736	cpsf4	100	81.481	ENSRNOG00000000985	Cpsf4	100	81.111	Rattus_norvegicus
ENSPNAG00000003736	cpsf4	87	85.593	ENSRBIG00000033886	CPSF4	100	84.746	Rhinopithecus_bieti
ENSPNAG00000003736	cpsf4	100	81.852	ENSRROG00000040431	CPSF4	100	81.481	Rhinopithecus_roxellana
ENSPNAG00000003736	cpsf4	100	87.085	ENSSBOG00000020493	CPSF4	100	86.347	Saimiri_boliviensis_boliviensis
ENSPNAG00000003736	cpsf4	100	87.407	ENSSHAG00000011533	CPSF4	100	87.407	Sarcophilus_harrisii
ENSPNAG00000003736	cpsf4	100	88.406	ENSSFOG00015007883	cpsf4	100	88.406	Scleropages_formosus
ENSPNAG00000003736	cpsf4	100	81.481	ENSSMAG00000006374	cpsf4	100	79.779	Scophthalmus_maximus
ENSPNAG00000003736	cpsf4	100	87.037	ENSSDUG00000018887	cpsf4	100	87.037	Seriola_dumerili
ENSPNAG00000003736	cpsf4	100	87.037	ENSSLDG00000019078	cpsf4	100	87.037	Seriola_lalandi_dorsalis
ENSPNAG00000003736	cpsf4	87	85.593	ENSSARG00000012416	CPSF4	100	84.746	Sorex_araneus
ENSPNAG00000003736	cpsf4	100	85.556	ENSSPUG00000003549	CPSF4	100	85.556	Sphenodon_punctatus
ENSPNAG00000003736	cpsf4	96	57.471	ENSSPUG00000014803	-	97	57.197	Sphenodon_punctatus
ENSPNAG00000003736	cpsf4	100	82.222	ENSSPAG00000006174	cpsf4	100	81.481	Stegastes_partitus
ENSPNAG00000003736	cpsf4	100	81.852	ENSSSCG00000026896	CPSF4	100	81.481	Sus_scrofa
ENSPNAG00000003736	cpsf4	100	80.882	ENSTGUG00000007552	CPSF4	100	78.676	Taeniopygia_guttata
ENSPNAG00000003736	cpsf4	100	84.074	ENSTRUG00000024220	cpsf4	100	82.963	Takifugu_rubripes
ENSPNAG00000003736	cpsf4	100	84.444	ENSTNIG00000006265	cpsf4	100	83.333	Tetraodon_nigroviridis
ENSPNAG00000003736	cpsf4	87	76.695	ENSTBEG00000011406	CPSF4	100	75.847	Tupaia_belangeri
ENSPNAG00000003736	cpsf4	100	74.074	ENSTTRG00000003007	CPSF4	76	96.154	Tursiops_truncatus
ENSPNAG00000003736	cpsf4	92	80.242	ENSUAMG00000008051	CPSF4	85	79.839	Ursus_americanus
ENSPNAG00000003736	cpsf4	100	81.481	ENSUMAG00000009474	CPSF4	100	81.111	Ursus_maritimus
ENSPNAG00000003736	cpsf4	100	79.259	ENSVVUG00000008824	CPSF4	100	81.852	Vulpes_vulpes
ENSPNAG00000003736	cpsf4	100	82.500	ENSXETG00000009892	cpsf4	100	82.500	Xenopus_tropicalis
ENSPNAG00000003736	cpsf4	99	59.410	ENSXETG00000004641	cpsf4l	99	59.420	Xenopus_tropicalis
ENSPNAG00000003736	cpsf4	100	83.696	ENSXCOG00000016040	cpsf4	100	82.246	Xiphophorus_couchianus
ENSPNAG00000003736	cpsf4	100	84.058	ENSXMAG00000024670	cpsf4	100	82.609	Xiphophorus_maculatus