EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000004186 (Gene tree)
Gene ID: 108425936
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 9686 bases
Position: chrKV575322.1:3541441-3551126
Accession: 108425936
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000020337	AD	PF09793.9	5.6e-25	1	1
ENSPNAP00000020345	AD	PF09793.9	6.9e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000030850	-	591	XM_017695021	ENSPNAP00000020345	196 (aa)	XP_017550510	UPI00081443EE
ENSPNAT00000039965	-	1783	-	ENSPNAP00000020337	205 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000004186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000004186's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000004186	lsm12b	100	85.204	ENSPNAG00000018435	lsm12a	100	85.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000004186	lsm12b	100	83.163	ENSG00000161654	LSM12	100	83.163	Homo_sapiens
ENSPNAG00000004186	lsm12b	100	94.388	ENSAPOG00000007907	lsm12b	100	94.388	Acanthochromis_polyacanthus
ENSPNAG00000004186	lsm12b	100	81.407	ENSAMEG00000018321	LSM12	100	81.407	Ailuropoda_melanoleuca
ENSPNAG00000004186	lsm12b	100	92.857	ENSACIG00000008538	lsm12b	100	92.857	Amphilophus_citrinellus
ENSPNAG00000004186	lsm12b	100	94.898	ENSAOCG00000021847	lsm12b	88	94.898	Amphiprion_ocellaris
ENSPNAG00000004186	lsm12b	100	94.898	ENSAPEG00000002252	lsm12b	100	94.898	Amphiprion_percula
ENSPNAG00000004186	lsm12b	100	93.367	ENSATEG00000005705	lsm12b	100	93.367	Anabas_testudineus
ENSPNAG00000004186	lsm12b	100	82.143	ENSACAG00000004618	LSM12	100	82.143	Anolis_carolinensis
ENSPNAG00000004186	lsm12b	100	83.163	ENSANAG00000029011	LSM12	100	84.545	Aotus_nancymaae
ENSPNAG00000004186	lsm12b	100	93.367	ENSACLG00000026332	lsm12b	100	93.367	Astatotilapia_calliptera
ENSPNAG00000004186	lsm12b	100	95.408	ENSAMXG00000032952	lsm12b	100	95.408	Astyanax_mexicanus
ENSPNAG00000004186	lsm12b	100	84.184	ENSAMXG00000036117	lsm12a	91	84.184	Astyanax_mexicanus
ENSPNAG00000004186	lsm12b	100	83.163	ENSBTAG00000016252	LSM12	100	83.163	Bos_taurus
ENSPNAG00000004186	lsm12b	100	83.163	ENSCJAG00000048480	LSM12	100	84.545	Callithrix_jacchus
ENSPNAG00000004186	lsm12b	100	83.163	ENSCAFG00000014379	LSM12	92	83.163	Canis_familiaris
ENSPNAG00000004186	lsm12b	100	83.163	ENSCAFG00020012173	LSM12	100	83.163	Canis_lupus_dingo
ENSPNAG00000004186	lsm12b	100	83.163	ENSCHIG00000018175	LSM12	100	83.163	Capra_hircus
ENSPNAG00000004186	lsm12b	100	83.163	ENSTSYG00000036361	LSM12	100	83.163	Carlito_syrichta
ENSPNAG00000004186	lsm12b	83	79.012	ENSCAPG00000009647	LSM12	89	79.012	Cavia_aperea
ENSPNAG00000004186	lsm12b	100	82.143	ENSCPOG00000012860	LSM12	100	83.636	Cavia_porcellus
ENSPNAG00000004186	lsm12b	100	83.163	ENSCCAG00000032905	LSM12	100	84.545	Cebus_capucinus
ENSPNAG00000004186	lsm12b	100	83.163	ENSCATG00000030577	-	100	84.545	Cercocebus_atys
ENSPNAG00000004186	lsm12b	100	82.653	ENSCLAG00000015759	LSM12	100	83.636	Chinchilla_lanigera
ENSPNAG00000004186	lsm12b	100	83.163	ENSCSAG00000003486	LSM12	100	83.163	Chlorocebus_sabaeus
ENSPNAG00000004186	lsm12b	56	84.404	ENSCHOG00000001198	LSM12	100	84.404	Choloepus_hoffmanni
ENSPNAG00000004186	lsm12b	100	84.184	ENSCPBG00000027105	LSM12	100	84.184	Chrysemys_picta_bellii
ENSPNAG00000004186	lsm12b	100	83.163	ENSCANG00000043328	LSM12	100	84.545	Colobus_angolensis_palliatus
ENSPNAG00000004186	lsm12b	100	83.163	ENSCGRG00001002094	Lsm12	100	84.545	Cricetulus_griseus_chok1gshd
ENSPNAG00000004186	lsm12b	89	75.287	ENSCGRG00000004316	Lsm12	98	75.287	Cricetulus_griseus_crigri
ENSPNAG00000004186	lsm12b	100	93.367	ENSCSEG00000008434	lsm12b	100	93.367	Cynoglossus_semilaevis
ENSPNAG00000004186	lsm12b	100	93.367	ENSCVAG00000008755	lsm12b	100	93.367	Cyprinodon_variegatus
ENSPNAG00000004186	lsm12b	100	84.694	ENSDARG00000028848	lsm12a	100	84.694	Danio_rerio
ENSPNAG00000004186	lsm12b	100	92.347	ENSDARG00000109510	lsm12b	100	92.347	Danio_rerio
ENSPNAG00000004186	lsm12b	100	83.163	ENSDNOG00000002418	LSM12	91	83.163	Dasypus_novemcinctus
ENSPNAG00000004186	lsm12b	100	83.163	ENSDORG00000016381	Lsm12	100	84.545	Dipodomys_ordii
ENSPNAG00000004186	lsm12b	83	34.337	FBgn0030364	Lsm12	76	34.337	Drosophila_melanogaster
ENSPNAG00000004186	lsm12b	73	34.177	FBgn0036057	CG14164	83	34.177	Drosophila_melanogaster
ENSPNAG00000004186	lsm12b	88	73.410	ENSETEG00000011012	-	99	73.410	Echinops_telfairi
ENSPNAG00000004186	lsm12b	100	83.673	ENSETEG00000008374	LSM12	100	83.673	Echinops_telfairi
ENSPNAG00000004186	lsm12b	85	67.665	ENSEBUG00000016299	lsm12a	93	67.857	Eptatretus_burgeri
ENSPNAG00000004186	lsm12b	100	83.163	ENSEASG00005010155	LSM12	100	83.163	Equus_asinus_asinus
ENSPNAG00000004186	lsm12b	100	83.163	ENSECAG00000009071	LSM12	100	84.545	Equus_caballus
ENSPNAG00000004186	lsm12b	78	83.007	ENSEEUG00000002419	-	100	83.007	Erinaceus_europaeus
ENSPNAG00000004186	lsm12b	100	90.816	ENSELUG00000015538	lsm12b	100	86.224	Esox_lucius
ENSPNAG00000004186	lsm12b	100	88.265	ENSELUG00000000256	-	100	88.265	Esox_lucius
ENSPNAG00000004186	lsm12b	100	83.163	ENSFCAG00000037021	LSM12	100	83.163	Felis_catus
ENSPNAG00000004186	lsm12b	80	79.487	ENSFDAG00000008954	LSM12	91	79.487	Fukomys_damarensis
ENSPNAG00000004186	lsm12b	100	93.367	ENSFHEG00000019913	lsm12b	100	93.367	Fundulus_heteroclitus
ENSPNAG00000004186	lsm12b	81	94.304	ENSGMOG00000015449	lsm12b	100	94.304	Gadus_morhua
ENSPNAG00000004186	lsm12b	78	84.967	ENSGALG00000039803	LSM12	100	84.967	Gallus_gallus
ENSPNAG00000004186	lsm12b	100	93.367	ENSGAFG00000011829	lsm12b	100	93.367	Gambusia_affinis
ENSPNAG00000004186	lsm12b	81	94.937	ENSGACG00000003428	lsm12b	100	94.937	Gasterosteus_aculeatus
ENSPNAG00000004186	lsm12b	100	83.673	ENSGAGG00000021965	LSM12	100	83.673	Gopherus_agassizii
ENSPNAG00000004186	lsm12b	100	83.163	ENSGGOG00000010589	-	100	84.545	Gorilla_gorilla
ENSPNAG00000004186	lsm12b	85	93.413	ENSHBUG00000007667	lsm12b	74	93.413	Haplochromis_burtoni
ENSPNAG00000004186	lsm12b	100	83.163	ENSHGLG00000011411	LSM12	100	84.545	Heterocephalus_glaber_female
ENSPNAG00000004186	lsm12b	79	82.468	ENSHGLG00100000241	LSM12	82	82.468	Heterocephalus_glaber_male
ENSPNAG00000004186	lsm12b	100	91.837	ENSHCOG00000002094	lsm12b	100	91.837	Hippocampus_comes
ENSPNAG00000004186	lsm12b	100	94.898	ENSIPUG00000014800	lsm12	100	94.898	Ictalurus_punctatus
ENSPNAG00000004186	lsm12b	99	81.959	ENSIPUG00000008936	lsm12a	99	81.959	Ictalurus_punctatus
ENSPNAG00000004186	lsm12b	100	83.163	ENSSTOG00000007403	LSM12	100	84.545	Ictidomys_tridecemlineatus
ENSPNAG00000004186	lsm12b	80	71.069	ENSJJAG00000014652	-	97	69.939	Jaculus_jaculus
ENSPNAG00000004186	lsm12b	100	82.143	ENSJJAG00000004364	-	100	83.636	Jaculus_jaculus
ENSPNAG00000004186	lsm12b	96	73.684	ENSJJAG00000011793	-	100	73.684	Jaculus_jaculus
ENSPNAG00000004186	lsm12b	85	94.012	ENSKMAG00000007704	lsm12b	57	93.452	Kryptolebias_marmoratus
ENSPNAG00000004186	lsm12b	100	94.388	ENSLBEG00000027999	lsm12b	100	94.388	Labrus_bergylta
ENSPNAG00000004186	lsm12b	100	86.224	ENSLACG00000015981	LSM12	100	86.224	Latimeria_chalumnae
ENSPNAG00000004186	lsm12b	100	91.327	ENSLOCG00000013079	lsm12b	99	91.327	Lepisosteus_oculatus
ENSPNAG00000004186	lsm12b	100	83.163	ENSLAFG00000005202	LSM12	100	83.163	Loxodonta_africana
ENSPNAG00000004186	lsm12b	100	83.163	ENSMFAG00000031376	LSM12	100	84.545	Macaca_fascicularis
ENSPNAG00000004186	lsm12b	100	83.163	ENSMMUG00000006804	LSM12	100	84.545	Macaca_mulatta
ENSPNAG00000004186	lsm12b	65	72.414	ENSMMUG00000042106	-	100	72.414	Macaca_mulatta
ENSPNAG00000004186	lsm12b	100	83.163	ENSMNEG00000030594	-	100	84.545	Macaca_nemestrina
ENSPNAG00000004186	lsm12b	100	83.163	ENSMLEG00000039934	LSM12	100	84.545	Mandrillus_leucophaeus
ENSPNAG00000004186	lsm12b	100	94.388	ENSMAMG00000004279	lsm12b	100	94.388	Mastacembelus_armatus
ENSPNAG00000004186	lsm12b	100	93.367	ENSMZEG00005005754	lsm12b	100	93.367	Maylandia_zebra
ENSPNAG00000004186	lsm12b	100	83.163	ENSMICG00000037219	LSM12	100	84.545	Microcebus_murinus
ENSPNAG00000004186	lsm12b	100	70.408	ENSMOCG00000017015	-	86	70.408	Microtus_ochrogaster
ENSPNAG00000004186	lsm12b	100	83.163	ENSMOCG00000019878	-	100	84.545	Microtus_ochrogaster
ENSPNAG00000004186	lsm12b	100	94.388	ENSMMOG00000020848	lsm12b	100	94.388	Mola_mola
ENSPNAG00000004186	lsm12b	100	94.388	ENSMALG00000007578	lsm12b	100	94.388	Monopterus_albus
ENSPNAG00000004186	lsm12b	100	82.653	MGP_CAROLIEiJ_G0017241	Lsm12	100	83.636	Mus_caroli
ENSPNAG00000004186	lsm12b	100	83.163	ENSMUSG00000020922	Lsm12	100	84.545	Mus_musculus
ENSPNAG00000004186	lsm12b	100	76.526	MGP_PahariEiJ_G0018371	Lsm12	100	84.545	Mus_pahari
ENSPNAG00000004186	lsm12b	100	82.653	MGP_SPRETEiJ_G0018084	Lsm12	99	85.185	Mus_spretus
ENSPNAG00000004186	lsm12b	100	83.673	ENSMLUG00000006391	LSM12	100	83.673	Myotis_lucifugus
ENSPNAG00000004186	lsm12b	100	58.128	ENSNGAG00000015429	-	100	58.128	Nannospalax_galili
ENSPNAG00000004186	lsm12b	100	83.163	ENSNGAG00000001870	Lsm12	100	84.545	Nannospalax_galili
ENSPNAG00000004186	lsm12b	100	93.367	ENSNBRG00000006266	lsm12b	100	93.367	Neolamprologus_brichardi
ENSPNAG00000004186	lsm12b	100	83.163	ENSNLEG00000005580	-	100	84.545	Nomascus_leucogenys
ENSPNAG00000004186	lsm12b	85	83.133	ENSMEUG00000007501	-	100	83.133	Notamacropus_eugenii
ENSPNAG00000004186	lsm12b	100	83.163	ENSOPRG00000008552	LSM12	100	83.163	Ochotona_princeps
ENSPNAG00000004186	lsm12b	100	75.510	ENSODEG00000007886	-	74	75.510	Octodon_degus
ENSPNAG00000004186	lsm12b	100	83.163	ENSODEG00000017998	-	100	83.163	Octodon_degus
ENSPNAG00000004186	lsm12b	100	93.367	ENSONIG00000007933	lsm12b	100	93.367	Oreochromis_niloticus
ENSPNAG00000004186	lsm12b	100	81.407	ENSOCUG00000008566	-	100	81.407	Oryctolagus_cuniculus
ENSPNAG00000004186	lsm12b	99	78.462	ENSOCUG00000021254	-	100	78.462	Oryctolagus_cuniculus
ENSPNAG00000004186	lsm12b	99	77.436	ENSOCUG00000024823	-	100	77.436	Oryctolagus_cuniculus
ENSPNAG00000004186	lsm12b	99	77.949	ENSOCUG00000027889	-	100	77.949	Oryctolagus_cuniculus
ENSPNAG00000004186	lsm12b	100	92.857	ENSORLG00000011310	lsm12b	100	92.857	Oryzias_latipes
ENSPNAG00000004186	lsm12b	100	92.857	ENSORLG00020002060	lsm12b	92	92.857	Oryzias_latipes_hni
ENSPNAG00000004186	lsm12b	100	92.857	ENSORLG00015001647	lsm12b	92	92.857	Oryzias_latipes_hsok
ENSPNAG00000004186	lsm12b	100	93.878	ENSOMEG00000006184	lsm12b	92	93.878	Oryzias_melastigma
ENSPNAG00000004186	lsm12b	100	83.163	ENSOGAG00000010489	LSM12	100	83.163	Otolemur_garnettii
ENSPNAG00000004186	lsm12b	100	80.198	ENSOARG00000006589	LSM12	100	80.198	Ovis_aries
ENSPNAG00000004186	lsm12b	100	73.980	ENSPPAG00000034974	-	100	73.980	Pan_paniscus
ENSPNAG00000004186	lsm12b	100	83.163	ENSPPRG00000023420	LSM12	100	83.163	Panthera_pardus
ENSPNAG00000004186	lsm12b	72	83.636	ENSPTIG00000014850	-	100	83.636	Panthera_tigris_altaica
ENSPNAG00000004186	lsm12b	78	83.007	ENSPTIG00000012704	-	82	83.007	Panthera_tigris_altaica
ENSPNAG00000004186	lsm12b	100	83.163	ENSPTRG00000009261	LSM12	100	84.545	Pan_troglodytes
ENSPNAG00000004186	lsm12b	100	83.163	ENSPANG00000021315	-	100	84.545	Papio_anubis
ENSPNAG00000004186	lsm12b	100	91.327	ENSPKIG00000021058	lsm12b	100	91.327	Paramormyrops_kingsleyae
ENSPNAG00000004186	lsm12b	100	80.612	ENSPKIG00000017932	-	100	80.612	Paramormyrops_kingsleyae
ENSPNAG00000004186	lsm12b	100	93.367	ENSPMGG00000021344	lsm12b	100	93.367	Periophthalmus_magnuspinnatus
ENSPNAG00000004186	lsm12b	100	83.163	ENSPEMG00000012199	Lsm12	100	84.545	Peromyscus_maniculatus_bairdii
ENSPNAG00000004186	lsm12b	89	66.857	ENSPMAG00000005461	lsm12a	99	66.857	Petromyzon_marinus
ENSPNAG00000004186	lsm12b	100	83.163	ENSPCIG00000020244	LSM12	100	83.163	Phascolarctos_cinereus
ENSPNAG00000004186	lsm12b	100	92.347	ENSPFOG00000015930	lsm12b	100	92.347	Poecilia_formosa
ENSPNAG00000004186	lsm12b	100	92.347	ENSPLAG00000021089	lsm12b	100	92.347	Poecilia_latipinna
ENSPNAG00000004186	lsm12b	100	92.347	ENSPMEG00000012961	lsm12b	100	92.347	Poecilia_mexicana
ENSPNAG00000004186	lsm12b	87	94.152	ENSPREG00000010236	lsm12b	95	94.152	Poecilia_reticulata
ENSPNAG00000004186	lsm12b	100	83.163	ENSPPYG00000008344	LSM12	100	83.163	Pongo_abelii
ENSPNAG00000004186	lsm12b	81	83.648	ENSPCAG00000008790	LSM12	100	83.648	Procavia_capensis
ENSPNAG00000004186	lsm12b	100	83.163	ENSPCOG00000027951	LSM12	100	84.545	Propithecus_coquereli
ENSPNAG00000004186	lsm12b	100	83.673	ENSPVAG00000013706	LSM12	100	83.673	Pteropus_vampyrus
ENSPNAG00000004186	lsm12b	100	93.367	ENSPNYG00000003386	lsm12b	100	93.367	Pundamilia_nyererei
ENSPNAG00000004186	lsm12b	100	83.163	ENSRNOG00000020894	Lsm12	100	83.163	Rattus_norvegicus
ENSPNAG00000004186	lsm12b	100	83.163	ENSRBIG00000027910	LSM12	100	84.545	Rhinopithecus_bieti
ENSPNAG00000004186	lsm12b	100	83.163	ENSRROG00000045530	-	100	84.545	Rhinopithecus_roxellana
ENSPNAG00000004186	lsm12b	99	52.577	ENSRROG00000000537	-	99	52.577	Rhinopithecus_roxellana
ENSPNAG00000004186	lsm12b	100	83.163	ENSSBOG00000025310	LSM12	100	84.545	Saimiri_boliviensis_boliviensis
ENSPNAG00000004186	lsm12b	81	81.646	ENSSHAG00000014914	LSM12	100	81.646	Sarcophilus_harrisii
ENSPNAG00000004186	lsm12b	100	89.286	ENSSFOG00015020392	lsm12a	100	89.286	Scleropages_formosus
ENSPNAG00000004186	lsm12b	100	91.837	ENSSFOG00015009612	lsm12	100	91.837	Scleropages_formosus
ENSPNAG00000004186	lsm12b	100	94.388	ENSSMAG00000008089	lsm12b	100	94.388	Scophthalmus_maximus
ENSPNAG00000004186	lsm12b	100	94.388	ENSSDUG00000012711	lsm12b	100	94.388	Seriola_dumerili
ENSPNAG00000004186	lsm12b	100	94.388	ENSSLDG00000007404	lsm12b	100	94.388	Seriola_lalandi_dorsalis
ENSPNAG00000004186	lsm12b	78	82.353	ENSSARG00000005537	LSM12	100	82.353	Sorex_araneus
ENSPNAG00000004186	lsm12b	100	84.184	ENSSPUG00000011984	LSM12	100	84.184	Sphenodon_punctatus
ENSPNAG00000004186	lsm12b	100	94.898	ENSSPAG00000017058	lsm12b	100	94.898	Stegastes_partitus
ENSPNAG00000004186	lsm12b	100	83.163	ENSSSCG00000032394	LSM12	100	83.163	Sus_scrofa
ENSPNAG00000004186	lsm12b	100	93.367	ENSTRUG00000007121	lsm12b	100	93.367	Takifugu_rubripes
ENSPNAG00000004186	lsm12b	100	92.347	ENSTNIG00000014436	lsm12b	100	92.347	Tetraodon_nigroviridis
ENSPNAG00000004186	lsm12b	100	82.653	ENSTBEG00000012523	-	100	82.653	Tupaia_belangeri
ENSPNAG00000004186	lsm12b	100	81.122	ENSTBEG00000012392	-	100	81.122	Tupaia_belangeri
ENSPNAG00000004186	lsm12b	100	83.163	ENSTTRG00000010433	LSM12	100	83.163	Tursiops_truncatus
ENSPNAG00000004186	lsm12b	100	83.163	ENSUAMG00000006313	LSM12	100	83.163	Ursus_americanus
ENSPNAG00000004186	lsm12b	81	80.380	ENSUMAG00000012987	LSM12	90	80.380	Ursus_maritimus
ENSPNAG00000004186	lsm12b	100	78.061	ENSVPAG00000011145	LSM12	100	78.061	Vicugna_pacos
ENSPNAG00000004186	lsm12b	100	83.163	ENSVVUG00000017581	LSM12	100	83.163	Vulpes_vulpes
ENSPNAG00000004186	lsm12b	82	60.625	ENSXETG00000003371	lsm12	77	60.625	Xenopus_tropicalis
ENSPNAG00000004186	lsm12b	100	93.367	ENSXCOG00000003994	lsm12b	100	93.367	Xiphophorus_couchianus
ENSPNAG00000004186	lsm12b	100	93.367	ENSXMAG00000020950	lsm12b	100	93.367	Xiphophorus_maculatus