EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000005436 (Gene tree)
Gene ID: 108425944
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 24311 bases
Position: chrKV575322.1:31714-56024
Accession: 108425944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000021962	R3H	PF01424.22	2.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000040892	R3HDM1-201	2658	XM_017695029	ENSPNAP00000021962	885 (aa)	XP_017550518	-

Gene Model

Click here to download ENSPNAG00000005436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000005436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000005436	R3HDM1	99	77.705	ENSPNAG00000013952	r3hdm1	85	77.778
ENSPNAG00000005436	R3HDM1	61	38.992	ENSPNAG00000004162	arpp21	84	39.044
ENSPNAG00000005436	R3HDM1	99	47.132	ENSPNAG00000017473	r3hdm2	81	65.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000005436	R3HDM1	99	76.527	ENSG00000048991	R3HDM1	88	76.603	Homo_sapiens
ENSPNAG00000005436	R3HDM1	91	71.569	ENSAPOG00000020850	r3hdm1	83	72.549	Acanthochromis_polyacanthus
ENSPNAG00000005436	R3HDM1	87	71.569	ENSAOCG00000005192	r3hdm1	83	72.549	Amphiprion_ocellaris
ENSPNAG00000005436	R3HDM1	87	71.854	ENSAPEG00000016108	r3hdm1	86	72.848	Amphiprion_percula
ENSPNAG00000005436	R3HDM1	87	72.549	ENSATEG00000000232	r3hdm1	85	73.529	Anabas_testudineus
ENSPNAG00000005436	R3HDM1	99	76.206	ENSACAG00000001676	R3HDM1	76	76.282	Anolis_carolinensis
ENSPNAG00000005436	R3HDM1	99	76.527	ENSANAG00000035334	R3HDM1	88	76.603	Aotus_nancymaae
ENSPNAG00000005436	R3HDM1	87	71.242	ENSACLG00000027282	r3hdm1	85	72.222	Astatotilapia_calliptera
ENSPNAG00000005436	R3HDM1	60	39.369	ENSAMXG00000020587	arpp21	87	39.159	Astyanax_mexicanus
ENSPNAG00000005436	R3HDM1	99	91.447	ENSAMXG00000012861	R3HDM1	90	90.166	Astyanax_mexicanus
ENSPNAG00000005436	R3HDM1	99	62.579	ENSAMXG00000003536	r3hdm1	85	76.471	Astyanax_mexicanus
ENSPNAG00000005436	R3HDM1	99	76.206	ENSBTAG00000013302	R3HDM1	86	76.531	Bos_taurus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSCJAG00000011718	R3HDM1	88	76.603	Callithrix_jacchus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSCAFG00000005075	R3HDM1	83	76.603	Canis_familiaris
ENSPNAG00000005436	R3HDM1	99	76.527	ENSCAFG00020016119	R3HDM1	83	76.603	Canis_lupus_dingo
ENSPNAG00000005436	R3HDM1	99	76.849	ENSCHIG00000020851	R3HDM1	83	76.923	Capra_hircus
ENSPNAG00000005436	R3HDM1	99	72.669	ENSCPOG00000012784	R3HDM1	76	72.756	Cavia_porcellus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSCCAG00000027199	R3HDM1	88	76.603	Cebus_capucinus
ENSPNAG00000005436	R3HDM1	99	75.884	ENSCATG00000023642	R3HDM1	88	75.962	Cercocebus_atys
ENSPNAG00000005436	R3HDM1	99	75.884	ENSCLAG00000007962	R3HDM1	76	75.962	Chinchilla_lanigera
ENSPNAG00000005436	R3HDM1	99	76.206	ENSCSAG00000016356	R3HDM1	84	76.282	Chlorocebus_sabaeus
ENSPNAG00000005436	R3HDM1	86	81.818	ENSCHOG00000013638	R3HDM1	65	69.118	Choloepus_hoffmanni
ENSPNAG00000005436	R3HDM1	95	80.709	ENSCPBG00000009645	R3HDM1	92	80.784	Chrysemys_picta_bellii
ENSPNAG00000005436	R3HDM1	99	76.527	ENSCANG00000034748	R3HDM1	83	76.603	Colobus_angolensis_palliatus
ENSPNAG00000005436	R3HDM1	99	75.563	ENSCGRG00001012357	R3hdm1	73	75.641	Cricetulus_griseus_chok1gshd
ENSPNAG00000005436	R3HDM1	99	75.563	ENSCGRG00000012080	R3hdm1	80	75.641	Cricetulus_griseus_crigri
ENSPNAG00000005436	R3HDM1	87	68.421	ENSCSEG00000008944	r3hdm1	82	69.408	Cynoglossus_semilaevis
ENSPNAG00000005436	R3HDM1	86	71.186	ENSCVAG00000007582	r3hdm1	84	72.203	Cyprinodon_variegatus
ENSPNAG00000005436	R3HDM1	60	35.691	ENSDARG00000061081	arpp21	89	36.309	Danio_rerio
ENSPNAG00000005436	R3HDM1	98	74.150	ENSDNOG00000000771	R3HDM1	82	74.237	Dasypus_novemcinctus
ENSPNAG00000005436	R3HDM1	94	75.000	ENSETEG00000013606	R3HDM1	79	75.719	Echinops_telfairi
ENSPNAG00000005436	R3HDM1	99	76.206	ENSEASG00005007392	R3HDM1	83	76.282	Equus_asinus_asinus
ENSPNAG00000005436	R3HDM1	99	77.133	ENSECAG00000019114	R3HDM1	83	76.282	Equus_caballus
ENSPNAG00000005436	R3HDM1	95	83.462	ENSELUG00000014413	r3hdm1	87	83.026	Esox_lucius
ENSPNAG00000005436	R3HDM1	96	85.660	ENSELUG00000004909	R3HDM1	85	85.393	Esox_lucius
ENSPNAG00000005436	R3HDM1	99	77.133	ENSFCAG00000027113	R3HDM1	88	76.603	Felis_catus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSFDAG00000016478	R3HDM1	76	76.603	Fukomys_damarensis
ENSPNAG00000005436	R3HDM1	87	70.957	ENSFHEG00000018713	r3hdm1	75	71.569	Fundulus_heteroclitus
ENSPNAG00000005436	R3HDM1	53	87.209	ENSGMOG00000006042	-	52	87.259	Gadus_morhua
ENSPNAG00000005436	R3HDM1	99	62.106	ENSGALG00000012246	R3HDM1	99	61.874	Gallus_gallus
ENSPNAG00000005436	R3HDM1	88	70.957	ENSGAFG00000006203	r3hdm1	85	71.617	Gambusia_affinis
ENSPNAG00000005436	R3HDM1	92	69.256	ENSGACG00000014925	r3hdm1	78	70.227	Gasterosteus_aculeatus
ENSPNAG00000005436	R3HDM1	99	75.884	ENSGAGG00000007840	R3HDM1	84	75.478	Gopherus_agassizii
ENSPNAG00000005436	R3HDM1	99	76.527	ENSGGOG00000008156	R3HDM1	88	76.603	Gorilla_gorilla
ENSPNAG00000005436	R3HDM1	99	75.884	ENSHGLG00000015718	R3HDM1	76	75.962	Heterocephalus_glaber_female
ENSPNAG00000005436	R3HDM1	99	75.884	ENSHGLG00100003184	-	76	75.962	Heterocephalus_glaber_male
ENSPNAG00000005436	R3HDM1	87	68.301	ENSHCOG00000013366	r3hdm1	86	67.722	Hippocampus_comes
ENSPNAG00000005436	R3HDM1	98	59.291	ENSIPUG00000013629	r3hdm1	87	74.110	Ictalurus_punctatus
ENSPNAG00000005436	R3HDM1	87	85.993	ENSIPUG00000001676	R3HDM1	85	86.039	Ictalurus_punctatus
ENSPNAG00000005436	R3HDM1	55	37.004	ENSIPUG00000020552	arpp21	74	37.774	Ictalurus_punctatus
ENSPNAG00000005436	R3HDM1	99	76.206	ENSSTOG00000007572	R3HDM1	83	76.282	Ictidomys_tridecemlineatus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSLACG00000005334	R3HDM1	88	76.603	Latimeria_chalumnae
ENSPNAG00000005436	R3HDM1	99	78.662	ENSLOCG00000001641	r3hdm1	83	80.635	Lepisosteus_oculatus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSLAFG00000009065	R3HDM1	89	73.333	Loxodonta_africana
ENSPNAG00000005436	R3HDM1	99	76.527	ENSMFAG00000030331	R3HDM1	88	76.603	Macaca_fascicularis
ENSPNAG00000005436	R3HDM1	99	76.527	ENSMMUG00000009844	R3HDM1	88	76.603	Macaca_mulatta
ENSPNAG00000005436	R3HDM1	99	76.527	ENSMNEG00000027793	R3HDM1	88	76.603	Macaca_nemestrina
ENSPNAG00000005436	R3HDM1	99	76.527	ENSMLEG00000043189	R3HDM1	88	76.603	Mandrillus_leucophaeus
ENSPNAG00000005436	R3HDM1	87	70.550	ENSMAMG00000004532	r3hdm1	83	69.906	Mastacembelus_armatus
ENSPNAG00000005436	R3HDM1	87	71.242	ENSMZEG00005003157	r3hdm1	82	72.222	Maylandia_zebra
ENSPNAG00000005436	R3HDM1	99	75.884	ENSMAUG00000010315	R3hdm1	84	75.962	Mesocricetus_auratus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSMICG00000005900	-	88	76.603	Microcebus_murinus
ENSPNAG00000005436	R3HDM1	92	62.485	ENSMICG00000042655	-	90	62.251	Microcebus_murinus
ENSPNAG00000005436	R3HDM1	53	54.898	ENSMOCG00000019833	-	68	81.281	Microtus_ochrogaster
ENSPNAG00000005436	R3HDM1	88	74.455	ENSMODG00000000923	R3HDM1	80	72.892	Monodelphis_domestica
ENSPNAG00000005436	R3HDM1	99	71.895	ENSMALG00000009000	r3hdm1	83	72.876	Monopterus_albus
ENSPNAG00000005436	R3HDM1	99	75.884	MGP_CAROLIEiJ_G0014543	R3hdm1	75	81.283	Mus_caroli
ENSPNAG00000005436	R3HDM1	99	75.884	ENSMUSG00000056211	R3hdm1	75	81.283	Mus_musculus
ENSPNAG00000005436	R3HDM1	99	75.884	MGP_PahariEiJ_G0027779	R3hdm1	75	81.283	Mus_pahari
ENSPNAG00000005436	R3HDM1	99	75.884	MGP_SPRETEiJ_G0015350	R3hdm1	75	81.283	Mus_spretus
ENSPNAG00000005436	R3HDM1	99	76.129	ENSMLUG00000013824	R3HDM1	83	75.962	Myotis_lucifugus
ENSPNAG00000005436	R3HDM1	99	76.527	ENSNLEG00000008622	R3HDM1	88	76.603	Nomascus_leucogenys
ENSPNAG00000005436	R3HDM1	61	61.538	ENSMEUG00000011784	R3HDM1	57	61.134	Notamacropus_eugenii
ENSPNAG00000005436	R3HDM1	99	76.206	ENSODEG00000008607	R3HDM1	76	76.282	Octodon_degus
ENSPNAG00000005436	R3HDM1	96	67.702	ENSONIG00000012017	r3hdm1	85	69.497	Oreochromis_niloticus
ENSPNAG00000005436	R3HDM1	99	75.563	ENSOANG00000007987	R3HDM1	83	75.641	Ornithorhynchus_anatinus
ENSPNAG00000005436	R3HDM1	88	75.563	ENSOCUG00000017366	R3HDM1	79	75.641	Oryctolagus_cuniculus
ENSPNAG00000005436	R3HDM1	87	66.269	ENSORLG00000004297	r3hdm1	84	71.382	Oryzias_latipes
ENSPNAG00000005436	R3HDM1	89	66.176	ENSORLG00015017355	r3hdm1	86	70.874	Oryzias_latipes_hsok
ENSPNAG00000005436	R3HDM1	99	76.527	ENSOGAG00000003136	R3HDM1	83	76.603	Otolemur_garnettii
ENSPNAG00000005436	R3HDM1	99	76.527	ENSPPAG00000027858	R3HDM1	88	76.603	Pan_paniscus
ENSPNAG00000005436	R3HDM1	99	61.294	ENSPPRG00000002626	R3HDM1	88	76.282	Panthera_pardus
ENSPNAG00000005436	R3HDM1	99	61.294	ENSPTIG00000016581	R3HDM1	88	76.603	Panthera_tigris_altaica
ENSPNAG00000005436	R3HDM1	99	76.527	ENSPTRG00000012494	R3HDM1	88	76.603	Pan_troglodytes
ENSPNAG00000005436	R3HDM1	99	76.527	ENSPANG00000026448	R3HDM1	88	76.603	Papio_anubis
ENSPNAG00000005436	R3HDM1	99	68.092	ENSPKIG00000004328	r3hdm1	90	68.750	Paramormyrops_kingsleyae
ENSPNAG00000005436	R3HDM1	99	76.206	ENSPSIG00000012915	R3HDM1	83	76.282	Pelodiscus_sinensis
ENSPNAG00000005436	R3HDM1	99	75.563	ENSPEMG00000015187	R3hdm1	76	75.641	Peromyscus_maniculatus_bairdii
ENSPNAG00000005436	R3HDM1	89	63.514	ENSPMAG00000003369	-	85	63.636	Petromyzon_marinus
ENSPNAG00000005436	R3HDM1	99	76.603	ENSPCIG00000002491	R3HDM1	88	74.923	Phascolarctos_cinereus
ENSPNAG00000005436	R3HDM1	87	69.536	ENSPFOG00000015036	r3hdm1	73	70.530	Poecilia_formosa
ENSPNAG00000005436	R3HDM1	87	69.536	ENSPMEG00000023947	r3hdm1	85	70.530	Poecilia_mexicana
ENSPNAG00000005436	R3HDM1	87	70.627	ENSPREG00000007902	r3hdm1	85	71.617	Poecilia_reticulata
ENSPNAG00000005436	R3HDM1	99	75.000	ENSPPYG00000012815	R3HDM1	83	75.080	Pongo_abelii
ENSPNAG00000005436	R3HDM1	87	76.496	ENSPCAG00000006208	R3HDM1	70	76.170	Procavia_capensis
ENSPNAG00000005436	R3HDM1	95	79.705	ENSPCOG00000012698	R3HDM1	86	79.779	Propithecus_coquereli
ENSPNAG00000005436	R3HDM1	99	67.846	ENSPVAG00000006098	R3HDM1	83	67.949	Pteropus_vampyrus
ENSPNAG00000005436	R3HDM1	99	75.563	ENSRNOG00000004099	R3hdm1	76	75.641	Rattus_norvegicus
ENSPNAG00000005436	R3HDM1	95	80.515	ENSRBIG00000033317	R3HDM1	92	80.586	Rhinopithecus_bieti
ENSPNAG00000005436	R3HDM1	99	76.849	ENSRROG00000034534	R3HDM1	88	76.923	Rhinopithecus_roxellana
ENSPNAG00000005436	R3HDM1	99	76.527	ENSSBOG00000020389	R3HDM1	88	76.603	Saimiri_boliviensis_boliviensis
ENSPNAG00000005436	R3HDM1	99	81.579	ENSSFOG00015019851	-	82	81.639	Scleropages_formosus
ENSPNAG00000005436	R3HDM1	99	82.623	ENSSFOG00015014134	r3hdm1	83	83.168	Scleropages_formosus
ENSPNAG00000005436	R3HDM1	98	71.854	ENSSMAG00000001669	r3hdm1	88	70.347	Scophthalmus_maximus
ENSPNAG00000005436	R3HDM1	87	71.569	ENSSDUG00000010749	r3hdm1	85	72.549	Seriola_dumerili
ENSPNAG00000005436	R3HDM1	98	71.895	ENSSLDG00000004499	r3hdm1	84	71.203	Seriola_lalandi_dorsalis
ENSPNAG00000005436	R3HDM1	66	66.169	ENSSARG00000000352	-	54	66.169	Sorex_araneus
ENSPNAG00000005436	R3HDM1	84	71.895	ENSSPAG00000004648	r3hdm1	85	72.876	Stegastes_partitus
ENSPNAG00000005436	R3HDM1	99	76.451	ENSSSCG00000015692	R3HDM1	88	75.962	Sus_scrofa
ENSPNAG00000005436	R3HDM1	99	75.163	ENSTGUG00000011750	R3HDM1	83	75.244	Taeniopygia_guttata
ENSPNAG00000005436	R3HDM1	87	70.066	ENSTRUG00000011654	r3hdm1	84	71.053	Takifugu_rubripes
ENSPNAG00000005436	R3HDM1	87	69.032	ENSTNIG00000010362	r3hdm1	83	68.438	Tetraodon_nigroviridis
ENSPNAG00000005436	R3HDM1	99	76.527	ENSTTRG00000003935	R3HDM1	83	76.603	Tursiops_truncatus
ENSPNAG00000005436	R3HDM1	64	64.321	ENSUAMG00000024806	R3HDM1	78	76.603	Ursus_americanus
ENSPNAG00000005436	R3HDM1	99	61.058	ENSUMAG00000005552	R3HDM1	87	76.603	Ursus_maritimus
ENSPNAG00000005436	R3HDM1	96	76.923	ENSVPAG00000007333	R3HDM1	80	77.007	Vicugna_pacos
ENSPNAG00000005436	R3HDM1	99	76.527	ENSVVUG00000006457	R3HDM1	87	76.603	Vulpes_vulpes
ENSPNAG00000005436	R3HDM1	88	74.598	ENSXETG00000019330	r3hdm1	81	74.441	Xenopus_tropicalis
ENSPNAG00000005436	R3HDM1	90	70.297	ENSXMAG00000007885	r3hdm1	84	70.957	Xiphophorus_maculatus