EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000005498 (Gene tree)
Gene ID: 108431107
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 46487 bases
Position: chrKV575383.1:64760-111246
Accession: 108431107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000019032	Nucleoplasmin	PF03066.15	2.2e-36	1	1
ENSPNAP00000019036	Nucleoplasmin	PF03066.15	2.4e-36	1	1
ENSPNAP00000019023	Nucleoplasmin	PF03066.15	3e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000028599	-	1236	-	ENSPNAP00000019023	378 (aa)	-	-
ENSPNAT00000028603	-	4058	XM_017704042	ENSPNAP00000019032	294 (aa)	XP_017559531	UPI0008144794
ENSPNAT00000028625	-	1597	-	ENSPNAP00000019036	302 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000005498's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000005498's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000005498	npm1b	53	32.749	ENSPNAG00000001303	npm2b	86	32.121
ENSPNAG00000005498	npm1b	96	41.356	ENSPNAG00000026891	npm1a	97	39.527

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000005498	npm1b	99	64.310	ENSAPOG00000004268	npm1b	98	63.636	Acanthochromis_polyacanthus
ENSPNAG00000005498	npm1b	99	65.203	ENSAOCG00000012549	npm1b	98	64.527	Amphiprion_ocellaris
ENSPNAG00000005498	npm1b	99	65.188	ENSAPEG00000000868	npm1b	98	64.505	Amphiprion_percula
ENSPNAG00000005498	npm1b	99	59.532	ENSATEG00000006254	npm1b	98	62.876	Anabas_testudineus
ENSPNAG00000005498	npm1b	98	42.905	ENSACAG00000015626	-	96	42.509	Anolis_carolinensis
ENSPNAG00000005498	npm1b	100	82.828	ENSAMXG00000042148	npm1b	100	84.175	Astyanax_mexicanus
ENSPNAG00000005498	npm1b	84	32.016	ENSCAFG00000023359	-	95	34.274	Canis_familiaris
ENSPNAG00000005498	npm1b	96	45.862	ENSCPBG00000021221	-	58	45.862	Chrysemys_picta_bellii
ENSPNAG00000005498	npm1b	99	58.725	ENSCSEG00000004530	npm1b	98	60.870	Cynoglossus_semilaevis
ENSPNAG00000005498	npm1b	99	59.532	ENSCVAG00000013016	npm1b	98	58.863	Cyprinodon_variegatus
ENSPNAG00000005498	npm1b	99	74.832	ENSDARG00000037675	npm1b	99	78.114	Danio_rerio
ENSPNAG00000005498	npm1b	99	67.647	ENSELUG00000022123	npm1b	98	67.763	Esox_lucius
ENSPNAG00000005498	npm1b	95	45.455	ENSFALG00000003320	-	94	45.455	Ficedula_albicollis
ENSPNAG00000005498	npm1b	99	58.140	ENSFHEG00000020794	npm1b	98	57.475	Fundulus_heteroclitus
ENSPNAG00000005498	npm1b	99	60.274	ENSGMOG00000002689	npm1b	99	60.274	Gadus_morhua
ENSPNAG00000005498	npm1b	99	45.545	ENSGALG00000002197	-	73	45.545	Gallus_gallus
ENSPNAG00000005498	npm1b	99	55.184	ENSGAFG00000017709	npm1b	98	57.191	Gambusia_affinis
ENSPNAG00000005498	npm1b	99	64.384	ENSGACG00000016706	npm1b	99	64.164	Gasterosteus_aculeatus
ENSPNAG00000005498	npm1b	96	44.828	ENSGAGG00000020250	-	96	44.828	Gopherus_agassizii
ENSPNAG00000005498	npm1b	99	61.204	ENSHBUG00000019903	npm1b	93	63.880	Haplochromis_burtoni
ENSPNAG00000005498	npm1b	99	58.644	ENSHCOG00000003895	npm1b	98	61.824	Hippocampus_comes
ENSPNAG00000005498	npm1b	100	81.063	ENSIPUG00000020165	npm1b	100	82.060	Ictalurus_punctatus
ENSPNAG00000005498	npm1b	99	63.758	ENSKMAG00000008260	npm1b	99	63.087	Kryptolebias_marmoratus
ENSPNAG00000005498	npm1b	93	44.333	ENSLACG00000001779	-	100	45.890	Latimeria_chalumnae
ENSPNAG00000005498	npm1b	96	36.860	ENSLACG00000013460	-	96	34.459	Latimeria_chalumnae
ENSPNAG00000005498	npm1b	94	50.169	ENSLOCG00000001942	npm1b	99	52.881	Lepisosteus_oculatus
ENSPNAG00000005498	npm1b	71	56.818	ENSMAMG00000015335	npm1b	98	56.818	Mastacembelus_armatus
ENSPNAG00000005498	npm1b	94	45.230	ENSMGAG00000001591	-	100	45.230	Meleagris_gallopavo
ENSPNAG00000005498	npm1b	80	59.917	ENSMALG00000015383	npm1b	98	62.397	Monopterus_albus
ENSPNAG00000005498	npm1b	99	60.884	ENSONIG00000001397	npm1b	98	62.457	Oreochromis_niloticus
ENSPNAG00000005498	npm1b	99	56.187	ENSOMEG00000003414	npm1b	98	57.191	Oryzias_melastigma
ENSPNAG00000005498	npm1b	99	61.093	ENSPKIG00000020050	npm1b	99	61.415	Paramormyrops_kingsleyae
ENSPNAG00000005498	npm1b	97	44.027	ENSPSIG00000011204	-	92	44.637	Pelodiscus_sinensis
ENSPNAG00000005498	npm1b	88	37.175	ENSPMAG00000004930	npm1b	99	35.664	Petromyzon_marinus
ENSPNAG00000005498	npm1b	99	60.667	ENSPFOG00000018357	npm1b	98	60.000	Poecilia_formosa
ENSPNAG00000005498	npm1b	96	58.824	ENSSFOG00015005064	npm1b	97	59.170	Scleropages_formosus
ENSPNAG00000005498	npm1b	99	62.876	ENSSMAG00000008088	npm1b	98	63.333	Scophthalmus_maximus
ENSPNAG00000005498	npm1b	99	67.114	ENSSDUG00000007726	npm1b	98	66.443	Seriola_dumerili
ENSPNAG00000005498	npm1b	99	67.450	ENSSLDG00000021396	npm1b	98	66.779	Seriola_lalandi_dorsalis
ENSPNAG00000005498	npm1b	52	44.872	ENSSPUG00000015604	-	72	46.575	Sphenodon_punctatus
ENSPNAG00000005498	npm1b	99	60.000	ENSSPAG00000011152	npm1b	98	62.963	Stegastes_partitus
ENSPNAG00000005498	npm1b	94	43.706	ENSTGUG00000014970	-	100	43.509	Taeniopygia_guttata
ENSPNAG00000005498	npm1b	99	61.356	ENSTRUG00000008105	npm1b	94	61.356	Takifugu_rubripes
ENSPNAG00000005498	npm1b	99	62.585	ENSTNIG00000013057	npm1b	99	62.585	Tetraodon_nigroviridis
ENSPNAG00000005498	npm1b	99	45.333	ENSXETG00000008403	npm1	98	44.000	Xenopus_tropicalis
ENSPNAG00000005498	npm1b	99	58.194	ENSXMAG00000001986	npm1b	98	59.000	Xiphophorus_maculatus