EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000006881 (Gene tree)
Gene ID: 108426424
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 7179 bases
Position: chrKV575328.1:2193348-2200526
Accession: 108426424
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000037555	TruB_N	PF01509.18	7.6e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000034021	-	810	XM_017695879	ENSPNAP00000037555	269 (aa)	XP_017551368	-

Gene Model

Click here to download ENSPNAG00000006881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000006881's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000006881	trub1	88	58.456	ENSG00000165832	TRUB1	74	59.615	Homo_sapiens
ENSPNAG00000006881	trub1	78	67.623	ENSAPOG00000020565	trub1	92	67.323	Acanthochromis_polyacanthus
ENSPNAG00000006881	trub1	88	57.664	ENSAMEG00000014931	TRUB1	74	58.779	Ailuropoda_melanoleuca
ENSPNAG00000006881	trub1	85	74.561	ENSACIG00000003060	trub1	86	74.561	Amphilophus_citrinellus
ENSPNAG00000006881	trub1	78	68.033	ENSAOCG00000017188	trub1	91	68.273	Amphiprion_ocellaris
ENSPNAG00000006881	trub1	80	80.233	ENSAPEG00000015209	trub1	93	66.537	Amphiprion_percula
ENSPNAG00000006881	trub1	78	70.492	ENSATEG00000023291	trub1	87	70.492	Anabas_testudineus
ENSPNAG00000006881	trub1	78	59.671	ENSAPLG00000006808	TRUB1	87	59.671	Anas_platyrhynchos
ENSPNAG00000006881	trub1	87	55.805	ENSACAG00000009282	TRUB1	97	55.805	Anolis_carolinensis
ENSPNAG00000006881	trub1	88	58.088	ENSANAG00000022870	TRUB1	74	59.231	Aotus_nancymaae
ENSPNAG00000006881	trub1	85	63.602	ENSACLG00000000823	trub1	94	64.368	Astatotilapia_calliptera
ENSPNAG00000006881	trub1	99	76.923	ENSAMXG00000015845	trub1	100	76.923	Astyanax_mexicanus
ENSPNAG00000006881	trub1	84	59.615	ENSBTAG00000012955	TRUB1	74	59.615	Bos_taurus
ENSPNAG00000006881	trub1	88	58.088	ENSCJAG00000047815	TRUB1	74	59.231	Callithrix_jacchus
ENSPNAG00000006881	trub1	84	59.615	ENSCAFG00000011688	TRUB1	74	59.615	Canis_familiaris
ENSPNAG00000006881	trub1	84	59.615	ENSCAFG00020013237	TRUB1	74	59.615	Canis_lupus_dingo
ENSPNAG00000006881	trub1	84	59.615	ENSCHIG00000020884	TRUB1	78	59.615	Capra_hircus
ENSPNAG00000006881	trub1	88	56.618	ENSTSYG00000000446	TRUB1	77	56.618	Carlito_syrichta
ENSPNAG00000006881	trub1	79	56.808	ENSCAPG00000017088	TRUB1	79	56.808	Cavia_aperea
ENSPNAG00000006881	trub1	61	54.040	ENSCPOG00000030129	-	77	54.040	Cavia_porcellus
ENSPNAG00000006881	trub1	55	56.044	ENSCPOG00000040236	-	75	56.044	Cavia_porcellus
ENSPNAG00000006881	trub1	84	59.231	ENSCCAG00000028842	TRUB1	74	59.231	Cebus_capucinus
ENSPNAG00000006881	trub1	90	57.762	ENSCATG00000033431	TRUB1	76	58.868	Cercocebus_atys
ENSPNAG00000006881	trub1	55	55.495	ENSCLAG00000008664	TRUB1	75	55.495	Chinchilla_lanigera
ENSPNAG00000006881	trub1	88	58.088	ENSCSAG00000004891	TRUB1	74	59.231	Chlorocebus_sabaeus
ENSPNAG00000006881	trub1	82	53.937	ENSCHOG00000011931	TRUB1	73	53.937	Choloepus_hoffmanni
ENSPNAG00000006881	trub1	78	61.728	ENSCPBG00000003051	TRUB1	84	61.728	Chrysemys_picta_bellii
ENSPNAG00000006881	trub1	88	58.088	ENSCANG00000029445	TRUB1	74	59.231	Colobus_angolensis_palliatus
ENSPNAG00000006881	trub1	76	53.361	ENSCGRG00001010322	-	65	53.689	Cricetulus_griseus_chok1gshd
ENSPNAG00000006881	trub1	67	72.067	ENSCGRG00001016772	-	59	72.067	Cricetulus_griseus_chok1gshd
ENSPNAG00000006881	trub1	76	60.924	ENSCGRG00000010806	Trub1	75	61.066	Cricetulus_griseus_crigri
ENSPNAG00000006881	trub1	83	62.353	ENSCSEG00000011261	trub1	83	62.403	Cynoglossus_semilaevis
ENSPNAG00000006881	trub1	91	61.871	ENSCVAG00000008791	trub1	85	62.230	Cyprinodon_variegatus
ENSPNAG00000006881	trub1	96	74.806	ENSDARG00000053805	trub1	100	74.806	Danio_rerio
ENSPNAG00000006881	trub1	84	56.923	ENSDNOG00000001069	TRUB1	74	56.923	Dasypus_novemcinctus
ENSPNAG00000006881	trub1	83	58.431	ENSDORG00000010431	Trub1	79	57.509	Dipodomys_ordii
ENSPNAG00000006881	trub1	63	51.515	ENSETEG00000009183	TRUB1	57	51.515	Echinops_telfairi
ENSPNAG00000006881	trub1	88	57.721	ENSEASG00005014739	TRUB1	78	57.721	Equus_asinus_asinus
ENSPNAG00000006881	trub1	88	57.721	ENSECAG00000007177	TRUB1	78	57.721	Equus_caballus
ENSPNAG00000006881	trub1	84	51.154	ENSEEUG00000013993	TRUB1	72	51.154	Erinaceus_europaeus
ENSPNAG00000006881	trub1	84	70.656	ENSELUG00000000502	trub1	91	70.656	Esox_lucius
ENSPNAG00000006881	trub1	84	60.000	ENSFCAG00000031927	TRUB1	74	60.000	Felis_catus
ENSPNAG00000006881	trub1	67	71.508	ENSFALG00000002232	TRUB1	69	71.508	Ficedula_albicollis
ENSPNAG00000006881	trub1	55	56.593	ENSFDAG00000008140	TRUB1	75	56.593	Fukomys_damarensis
ENSPNAG00000006881	trub1	90	61.091	ENSFHEG00000004016	trub1	94	61.818	Fundulus_heteroclitus
ENSPNAG00000006881	trub1	84	55.985	ENSGALG00000009091	TRUB1	91	63.317	Gallus_gallus
ENSPNAG00000006881	trub1	80	73.853	ENSGAFG00000009193	trub1	86	73.853	Gambusia_affinis
ENSPNAG00000006881	trub1	68	75.824	ENSGACG00000015387	trub1	93	75.661	Gasterosteus_aculeatus
ENSPNAG00000006881	trub1	81	60.800	ENSGAGG00000009758	TRUB1	70	62.140	Gopherus_agassizii
ENSPNAG00000006881	trub1	88	58.456	ENSGGOG00000004583	TRUB1	78	58.456	Gorilla_gorilla
ENSPNAG00000006881	trub1	85	63.218	ENSHBUG00000016787	trub1	94	63.985	Haplochromis_burtoni
ENSPNAG00000006881	trub1	84	58.077	ENSHGLG00000015314	TRUB1	74	58.077	Heterocephalus_glaber_female
ENSPNAG00000006881	trub1	55	56.044	ENSHGLG00100009183	TRUB1	77	56.044	Heterocephalus_glaber_male
ENSPNAG00000006881	trub1	83	76.126	ENSHCOG00000017877	trub1	91	76.126	Hippocampus_comes
ENSPNAG00000006881	trub1	98	70.270	ENSIPUG00000017559	trub1	99	72.695	Ictalurus_punctatus
ENSPNAG00000006881	trub1	84	58.462	ENSSTOG00000003641	TRUB1	78	58.462	Ictidomys_tridecemlineatus
ENSPNAG00000006881	trub1	78	61.066	ENSJJAG00000011800	Trub1	72	61.066	Jaculus_jaculus
ENSPNAG00000006881	trub1	84	62.162	ENSKMAG00000006232	trub1	93	62.934	Kryptolebias_marmoratus
ENSPNAG00000006881	trub1	90	72.951	ENSLBEG00000026722	trub1	96	72.951	Labrus_bergylta
ENSPNAG00000006881	trub1	85	58.608	ENSLACG00000014885	TRUB1	92	58.608	Latimeria_chalumnae
ENSPNAG00000006881	trub1	84	67.704	ENSLOCG00000012979	trub1	88	67.704	Lepisosteus_oculatus
ENSPNAG00000006881	trub1	78	60.246	ENSLAFG00000015452	TRUB1	74	58.462	Loxodonta_africana
ENSPNAG00000006881	trub1	88	58.088	ENSMFAG00000031767	TRUB1	74	59.231	Macaca_fascicularis
ENSPNAG00000006881	trub1	88	58.088	ENSMMUG00000001902	TRUB1	74	59.231	Macaca_mulatta
ENSPNAG00000006881	trub1	88	56.107	ENSMNEG00000044646	TRUB1	77	56.107	Macaca_nemestrina
ENSPNAG00000006881	trub1	88	58.088	ENSMLEG00000042655	TRUB1	74	59.231	Mandrillus_leucophaeus
ENSPNAG00000006881	trub1	85	63.602	ENSMZEG00005024095	trub1	94	64.368	Maylandia_zebra
ENSPNAG00000006881	trub1	84	56.757	ENSMGAG00000011135	TRUB1	89	56.757	Meleagris_gallopavo
ENSPNAG00000006881	trub1	82	56.693	ENSMAUG00000011101	Trub1	80	55.882	Mesocricetus_auratus
ENSPNAG00000006881	trub1	88	58.088	ENSMICG00000016324	TRUB1	74	59.231	Microcebus_murinus
ENSPNAG00000006881	trub1	81	59.127	ENSMOCG00000017759	Trub1	82	57.721	Microtus_ochrogaster
ENSPNAG00000006881	trub1	87	58.582	ENSMODG00000009676	TRUB1	71	59.533	Monodelphis_domestica
ENSPNAG00000006881	trub1	77	60.581	MGP_CAROLIEiJ_G0023100	Trub1	72	60.656	Mus_caroli
ENSPNAG00000006881	trub1	77	59.751	ENSMUSG00000025086	Trub1	72	59.836	Mus_musculus
ENSPNAG00000006881	trub1	83	58.594	MGP_PahariEiJ_G0014588	Trub1	76	58.594	Mus_pahari
ENSPNAG00000006881	trub1	77	59.751	MGP_SPRETEiJ_G0024021	Trub1	72	59.836	Mus_spretus
ENSPNAG00000006881	trub1	88	58.456	ENSMPUG00000003556	TRUB1	78	58.456	Mustela_putorius_furo
ENSPNAG00000006881	trub1	84	58.846	ENSMLUG00000017686	TRUB1	76	58.846	Myotis_lucifugus
ENSPNAG00000006881	trub1	97	55.254	ENSNGAG00000018682	Trub1	84	55.254	Nannospalax_galili
ENSPNAG00000006881	trub1	83	75.785	ENSNBRG00000023393	trub1	90	75.785	Neolamprologus_brichardi
ENSPNAG00000006881	trub1	88	58.456	ENSNLEG00000016345	TRUB1	74	59.615	Nomascus_leucogenys
ENSPNAG00000006881	trub1	62	60.199	ENSMEUG00000006603	TRUB1	77	58.373	Notamacropus_eugenii
ENSPNAG00000006881	trub1	84	58.077	ENSOPRG00000009371	TRUB1	76	58.077	Ochotona_princeps
ENSPNAG00000006881	trub1	86	56.604	ENSODEG00000010854	TRUB1	76	56.604	Octodon_degus
ENSPNAG00000006881	trub1	85	64.368	ENSONIG00000007249	trub1	95	65.134	Oreochromis_niloticus
ENSPNAG00000006881	trub1	78	59.091	ENSOANG00000001556	TRUB1	83	57.540	Ornithorhynchus_anatinus
ENSPNAG00000006881	trub1	84	58.846	ENSOCUG00000009456	TRUB1	75	58.846	Oryctolagus_cuniculus
ENSPNAG00000006881	trub1	85	64.368	ENSORLG00000029719	trub1	97	63.704	Oryzias_latipes
ENSPNAG00000006881	trub1	85	64.368	ENSORLG00020016767	trub1	95	63.704	Oryzias_latipes_hni
ENSPNAG00000006881	trub1	85	64.368	ENSORLG00015014728	trub1	97	63.704	Oryzias_latipes_hsok
ENSPNAG00000006881	trub1	88	63.603	ENSOMEG00000014556	trub1	95	64.338	Oryzias_melastigma
ENSPNAG00000006881	trub1	88	58.088	ENSOGAG00000015895	TRUB1	74	59.231	Otolemur_garnettii
ENSPNAG00000006881	trub1	84	58.052	ENSOARG00000015591	TRUB1	76	58.052	Ovis_aries
ENSPNAG00000006881	trub1	88	58.456	ENSPPAG00000043645	TRUB1	74	59.615	Pan_paniscus
ENSPNAG00000006881	trub1	84	59.615	ENSPPRG00000007096	TRUB1	74	59.615	Panthera_pardus
ENSPNAG00000006881	trub1	84	59.615	ENSPTIG00000006378	TRUB1	74	59.615	Panthera_tigris_altaica
ENSPNAG00000006881	trub1	88	58.456	ENSPTRG00000002964	TRUB1	74	59.615	Pan_troglodytes
ENSPNAG00000006881	trub1	88	58.088	ENSPANG00000020712	TRUB1	74	59.231	Papio_anubis
ENSPNAG00000006881	trub1	64	80.702	ENSPKIG00000003852	trub1	74	80.702	Paramormyrops_kingsleyae
ENSPNAG00000006881	trub1	77	62.917	ENSPSIG00000012877	TRUB1	83	62.917	Pelodiscus_sinensis
ENSPNAG00000006881	trub1	81	62.698	ENSPMGG00000000075	trub1	91	63.492	Periophthalmus_magnuspinnatus
ENSPNAG00000006881	trub1	83	58.594	ENSPEMG00000011156	Trub1	75	58.594	Peromyscus_maniculatus_bairdii
ENSPNAG00000006881	trub1	94	55.789	ENSPCIG00000009729	TRUB1	75	57.609	Phascolarctos_cinereus
ENSPNAG00000006881	trub1	87	63.736	ENSPFOG00000009950	trub1	100	63.736	Poecilia_formosa
ENSPNAG00000006881	trub1	83	65.267	ENSPLAG00000013855	trub1	92	65.267	Poecilia_latipinna
ENSPNAG00000006881	trub1	88	63.333	ENSPMEG00000009064	trub1	97	63.333	Poecilia_mexicana
ENSPNAG00000006881	trub1	86	63.838	ENSPREG00000003343	trub1	98	63.838	Poecilia_reticulata
ENSPNAG00000006881	trub1	88	58.088	ENSPPYG00000002676	TRUB1	78	58.088	Pongo_abelii
ENSPNAG00000006881	trub1	85	51.908	ENSPCAG00000008427	TRUB1	74	52.290	Procavia_capensis
ENSPNAG00000006881	trub1	88	58.661	ENSPCOG00000024360	TRUB1	77	58.661	Propithecus_coquereli
ENSPNAG00000006881	trub1	62	59.701	ENSPVAG00000007575	TRUB1	76	59.701	Pteropus_vampyrus
ENSPNAG00000006881	trub1	85	63.602	ENSPNYG00000018614	trub1	94	64.368	Pundamilia_nyererei
ENSPNAG00000006881	trub1	93	55.124	ENSRNOG00000017321	Trub1	82	55.124	Rattus_norvegicus
ENSPNAG00000006881	trub1	88	50.365	ENSRBIG00000033423	TRUB1	72	51.145	Rhinopithecus_bieti
ENSPNAG00000006881	trub1	88	58.088	ENSRROG00000033902	TRUB1	74	59.231	Rhinopithecus_roxellana
ENSPNAG00000006881	trub1	88	58.088	ENSSBOG00000024237	TRUB1	74	59.231	Saimiri_boliviensis_boliviensis
ENSPNAG00000006881	trub1	75	67.317	ENSSHAG00000009346	TRUB1	69	67.317	Sarcophilus_harrisii
ENSPNAG00000006881	trub1	89	61.679	ENSSFOG00015022124	trub1	93	62.409	Scleropages_formosus
ENSPNAG00000006881	trub1	86	64.906	ENSSMAG00000001020	trub1	94	65.660	Scophthalmus_maximus
ENSPNAG00000006881	trub1	77	68.465	ENSSDUG00000016414	trub1	92	68.627	Seriola_dumerili
ENSPNAG00000006881	trub1	77	68.465	ENSSLDG00000015486	trub1	92	68.627	Seriola_lalandi_dorsalis
ENSPNAG00000006881	trub1	78	62.140	ENSSPUG00000001642	TRUB1	84	62.140	Sphenodon_punctatus
ENSPNAG00000006881	trub1	80	67.470	ENSSPAG00000001217	trub1	90	68.273	Stegastes_partitus
ENSPNAG00000006881	trub1	88	57.721	ENSSSCG00000010653	TRUB1	79	57.721	Sus_scrofa
ENSPNAG00000006881	trub1	78	63.223	ENSTGUG00000010971	TRUB1	87	63.223	Taeniopygia_guttata
ENSPNAG00000006881	trub1	72	56.410	ENSTBEG00000002880	TRUB1	76	56.410	Tupaia_belangeri
ENSPNAG00000006881	trub1	62	59.204	ENSTTRG00000005767	TRUB1	77	59.204	Tursiops_truncatus
ENSPNAG00000006881	trub1	88	58.456	ENSUAMG00000024876	TRUB1	78	58.456	Ursus_americanus
ENSPNAG00000006881	trub1	84	59.615	ENSUMAG00000002411	TRUB1	77	59.615	Ursus_maritimus
ENSPNAG00000006881	trub1	84	59.615	ENSVPAG00000005507	TRUB1	74	59.615	Vicugna_pacos
ENSPNAG00000006881	trub1	84	59.615	ENSVVUG00000010085	TRUB1	63	59.615	Vulpes_vulpes
ENSPNAG00000006881	trub1	78	60.417	ENSXETG00000023828	trub1	87	60.417	Xenopus_tropicalis
ENSPNAG00000006881	trub1	77	76.329	ENSXCOG00000017847	trub1	83	76.329	Xiphophorus_couchianus
ENSPNAG00000006881	trub1	87	62.547	ENSXMAG00000014701	trub1	96	62.547	Xiphophorus_maculatus