EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000008443 (Gene tree)
Gene ID: 108442228
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 4048 bases
Position: chrKV575296.1:1420522-1424569
Accession: 108442228
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000023953	RNA_pol_A_bac	PF01000.26	5.4e-30	1	1
ENSPNAP00000001908	RNA_pol_A_bac	PF01000.26	6.6e-30	1	1
ENSPNAP00000001891	RNA_pol_A_bac	PF01000.26	1.3e-25	1	1
ENSPNAP00000023953	RNA_pol_L	PF01193.24	1.3e-22	1	1
ENSPNAP00000001891	RNA_pol_L	PF01193.24	1.5e-22	1	1
ENSPNAP00000001908	RNA_pol_L	PF01193.24	1.6e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000011380	-	1026	-	ENSPNAP00000001891	341 (aa)	-	-
ENSPNAT00000011347	-	1373	XM_017722176	ENSPNAP00000001908	347 (aa)	XP_017577665	UPI00081424D9
ENSPNAT00000011355	-	1301	-	ENSPNAP00000023953	323 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000008443's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000008443's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000008443	polr1c	99	73.043	ENSG00000171453	POLR1C	100	79.839	Homo_sapiens
ENSPNAG00000008443	polr1c	100	81.766	ENSAPOG00000024356	polr1c	100	82.336	Acanthochromis_polyacanthus
ENSPNAG00000008443	polr1c	99	73.333	ENSAMEG00000012205	POLR1C	99	73.333	Ailuropoda_melanoleuca
ENSPNAG00000008443	polr1c	93	75.329	ENSACIG00000016268	polr1c	91	70.997	Amphilophus_citrinellus
ENSPNAG00000008443	polr1c	100	80.057	ENSAOCG00000011687	polr1c	97	80.627	Amphiprion_ocellaris
ENSPNAG00000008443	polr1c	100	80.912	ENSAPEG00000002433	polr1c	100	81.481	Amphiprion_percula
ENSPNAG00000008443	polr1c	99	83.954	ENSATEG00000005985	polr1c	99	83.954	Anabas_testudineus
ENSPNAG00000008443	polr1c	92	75.503	ENSAPLG00000002908	POLR1C	100	75.000	Anas_platyrhynchos
ENSPNAG00000008443	polr1c	89	74.351	ENSACAG00000009764	POLR1C	88	74.351	Anolis_carolinensis
ENSPNAG00000008443	polr1c	99	72.754	ENSANAG00000025805	POLR1C	99	72.754	Aotus_nancymaae
ENSPNAG00000008443	polr1c	59	32.812	ENSACLG00000004854	polr2c	77	33.505	Astatotilapia_calliptera
ENSPNAG00000008443	polr1c	100	83.761	ENSACLG00000006573	polr1c	100	84.330	Astatotilapia_calliptera
ENSPNAG00000008443	polr1c	100	93.084	ENSAMXG00000012062	polr1c	99	93.084	Astyanax_mexicanus
ENSPNAG00000008443	polr1c	99	74.203	ENSBTAG00000018969	POLR1C	99	74.203	Bos_taurus
ENSPNAG00000008443	polr1c	96	45.455	WBGene00019275	rpac-40	94	45.455	Caenorhabditis_elegans
ENSPNAG00000008443	polr1c	99	72.464	ENSCJAG00000005594	POLR1C	99	72.464	Callithrix_jacchus
ENSPNAG00000008443	polr1c	99	73.333	ENSCAFG00000001872	POLR1C	99	73.333	Canis_familiaris
ENSPNAG00000008443	polr1c	63	32.243	ENSCAFG00020007660	POLR2C	58	33.173	Canis_lupus_dingo
ENSPNAG00000008443	polr1c	99	73.333	ENSCAFG00020012018	POLR1C	99	73.333	Canis_lupus_dingo
ENSPNAG00000008443	polr1c	99	73.699	ENSCHIG00000004352	POLR1C	99	73.699	Capra_hircus
ENSPNAG00000008443	polr1c	99	73.333	ENSTSYG00000011921	POLR1C	99	73.333	Carlito_syrichta
ENSPNAG00000008443	polr1c	93	75.251	ENSCAPG00000015364	POLR1C	88	75.251	Cavia_aperea
ENSPNAG00000008443	polr1c	99	73.913	ENSCPOG00000038098	POLR1C	99	73.913	Cavia_porcellus
ENSPNAG00000008443	polr1c	99	73.043	ENSCCAG00000020169	POLR1C	99	73.043	Cebus_capucinus
ENSPNAG00000008443	polr1c	99	73.043	ENSCATG00000044045	POLR1C	99	73.043	Cercocebus_atys
ENSPNAG00000008443	polr1c	99	74.493	ENSCLAG00000009266	POLR1C	99	74.493	Chinchilla_lanigera
ENSPNAG00000008443	polr1c	63	32.394	ENSCLAG00000013676	POLR2C	51	33.173	Chinchilla_lanigera
ENSPNAG00000008443	polr1c	99	72.174	ENSCSAG00000011913	POLR1C	99	72.174	Chlorocebus_sabaeus
ENSPNAG00000008443	polr1c	66	68.396	ENSCHOG00000006601	POLR1C	100	68.396	Choloepus_hoffmanni
ENSPNAG00000008443	polr1c	98	79.472	ENSCPBG00000025203	POLR1C	99	79.472	Chrysemys_picta_bellii
ENSPNAG00000008443	polr1c	99	54.942	ENSCING00000003563	-	99	54.942	Ciona_intestinalis
ENSPNAG00000008443	polr1c	99	72.754	ENSCANG00000043167	POLR1C	99	72.754	Colobus_angolensis_palliatus
ENSPNAG00000008443	polr1c	99	73.043	ENSCGRG00001017533	Polr1c	99	73.043	Cricetulus_griseus_chok1gshd
ENSPNAG00000008443	polr1c	93	73.913	ENSCGRG00000013225	Polr1c	100	73.913	Cricetulus_griseus_crigri
ENSPNAG00000008443	polr1c	100	82.421	ENSCSEG00000018097	polr1c	100	82.421	Cynoglossus_semilaevis
ENSPNAG00000008443	polr1c	67	30.973	ENSCVAG00000017931	polr2c	87	31.364	Cyprinodon_variegatus
ENSPNAG00000008443	polr1c	66	84.434	ENSCVAG00000005684	polr1c	88	82.727	Cyprinodon_variegatus
ENSPNAG00000008443	polr1c	79	30.216	ENSDARG00000033596	polr2c	87	30.216	Danio_rerio
ENSPNAG00000008443	polr1c	100	89.049	ENSDARG00000039400	polr1c	96	89.049	Danio_rerio
ENSPNAG00000008443	polr1c	99	72.464	ENSDNOG00000042693	POLR1C	99	72.464	Dasypus_novemcinctus
ENSPNAG00000008443	polr1c	99	73.623	ENSDORG00000000429	Polr1c	99	73.623	Dipodomys_ordii
ENSPNAG00000008443	polr1c	93	53.000	FBgn0031657	CG3756	93	52.548	Drosophila_melanogaster
ENSPNAG00000008443	polr1c	99	70.231	ENSETEG00000010807	POLR1C	99	70.231	Echinops_telfairi
ENSPNAG00000008443	polr1c	99	68.986	ENSEBUG00000013725	polr1c	99	68.986	Eptatretus_burgeri
ENSPNAG00000008443	polr1c	99	72.754	ENSEASG00005003338	POLR1C	99	72.754	Equus_asinus_asinus
ENSPNAG00000008443	polr1c	99	72.754	ENSECAG00000023516	POLR1C	98	72.754	Equus_caballus
ENSPNAG00000008443	polr1c	99	74.493	ENSEEUG00000005471	POLR1C	99	74.493	Erinaceus_europaeus
ENSPNAG00000008443	polr1c	100	85.879	ENSELUG00000013027	polr1c	100	85.879	Esox_lucius
ENSPNAG00000008443	polr1c	99	73.043	ENSFCAG00000009735	POLR1C	99	73.043	Felis_catus
ENSPNAG00000008443	polr1c	93	75.851	ENSFALG00000012111	POLR1C	100	75.851	Ficedula_albicollis
ENSPNAG00000008443	polr1c	99	73.623	ENSFDAG00000008428	POLR1C	99	73.623	Fukomys_damarensis
ENSPNAG00000008443	polr1c	100	70.893	ENSFHEG00000000262	polr1c	100	71.182	Fundulus_heteroclitus
ENSPNAG00000008443	polr1c	93	81.788	ENSGMOG00000013878	polr1c	100	81.481	Gadus_morhua
ENSPNAG00000008443	polr1c	99	75.072	ENSGALG00000010349	POLR1C	99	75.072	Gallus_gallus
ENSPNAG00000008443	polr1c	100	81.766	ENSGAFG00000010153	polr1c	100	82.051	Gambusia_affinis
ENSPNAG00000008443	polr1c	100	76.923	ENSGACG00000002453	polr1c	100	77.778	Gasterosteus_aculeatus
ENSPNAG00000008443	polr1c	98	79.180	ENSGAGG00000010640	POLR1C	99	79.179	Gopherus_agassizii
ENSPNAG00000008443	polr1c	99	73.043	ENSGGOG00000010903	POLR1C	99	73.043	Gorilla_gorilla
ENSPNAG00000008443	polr1c	59	32.812	ENSHBUG00000023040	polr2c	77	33.505	Haplochromis_burtoni
ENSPNAG00000008443	polr1c	100	77.810	ENSHBUG00000017816	polr1c	100	77.810	Haplochromis_burtoni
ENSPNAG00000008443	polr1c	99	73.333	ENSHGLG00000019441	POLR1C	99	73.333	Heterocephalus_glaber_female
ENSPNAG00000008443	polr1c	99	73.623	ENSHGLG00100005970	POLR1C	99	73.623	Heterocephalus_glaber_male
ENSPNAG00000008443	polr1c	98	77.681	ENSHCOG00000002179	polr1c	99	77.681	Hippocampus_comes
ENSPNAG00000008443	polr1c	100	91.667	ENSIPUG00000024464	polr1c	100	91.667	Ictalurus_punctatus
ENSPNAG00000008443	polr1c	99	73.333	ENSSTOG00000010631	POLR1C	99	73.333	Ictidomys_tridecemlineatus
ENSPNAG00000008443	polr1c	99	73.623	ENSJJAG00000023110	Polr1c	99	73.623	Jaculus_jaculus
ENSPNAG00000008443	polr1c	100	80.057	ENSKMAG00000014305	polr1c	97	80.627	Kryptolebias_marmoratus
ENSPNAG00000008443	polr1c	100	82.336	ENSLBEG00000014925	polr1c	100	82.906	Labrus_bergylta
ENSPNAG00000008443	polr1c	95	60.121	ENSLACG00000012567	POLR1C	98	60.121	Latimeria_chalumnae
ENSPNAG00000008443	polr1c	100	83.573	ENSLOCG00000016710	polr1c	96	83.573	Lepisosteus_oculatus
ENSPNAG00000008443	polr1c	85	30.466	ENSLOCG00000003215	polr2c	87	30.466	Lepisosteus_oculatus
ENSPNAG00000008443	polr1c	93	74.086	ENSLAFG00000026248	POLR1C	100	74.086	Loxodonta_africana
ENSPNAG00000008443	polr1c	63	32.243	ENSLAFG00000027230	POLR2C	72	33.173	Loxodonta_africana
ENSPNAG00000008443	polr1c	99	72.754	ENSMFAG00000046295	POLR1C	99	72.754	Macaca_fascicularis
ENSPNAG00000008443	polr1c	99	72.754	ENSMMUG00000015192	POLR1C	99	72.754	Macaca_mulatta
ENSPNAG00000008443	polr1c	99	72.754	ENSMNEG00000028073	POLR1C	99	72.754	Macaca_nemestrina
ENSPNAG00000008443	polr1c	99	72.754	ENSMLEG00000034818	POLR1C	99	72.754	Mandrillus_leucophaeus
ENSPNAG00000008443	polr1c	100	83.761	ENSMAMG00000008700	polr1c	100	83.761	Mastacembelus_armatus
ENSPNAG00000008443	polr1c	100	83.476	ENSMZEG00005018545	polr1c	100	84.046	Maylandia_zebra
ENSPNAG00000008443	polr1c	90	72.165	ENSMGAG00000011020	POLR1C	100	72.165	Meleagris_gallopavo
ENSPNAG00000008443	polr1c	99	72.754	ENSMAUG00000014329	Polr1c	99	72.754	Mesocricetus_auratus
ENSPNAG00000008443	polr1c	99	72.464	ENSMICG00000005027	POLR1C	99	73.290	Microcebus_murinus
ENSPNAG00000008443	polr1c	99	73.623	ENSMOCG00000017549	Polr1c	99	73.623	Microtus_ochrogaster
ENSPNAG00000008443	polr1c	100	67.723	ENSMMOG00000005380	polr1c	100	68.012	Mola_mola
ENSPNAG00000008443	polr1c	90	75.945	ENSMODG00000018964	POLR1C	100	75.945	Monodelphis_domestica
ENSPNAG00000008443	polr1c	100	72.622	ENSMALG00000011711	polr1c	100	72.911	Monopterus_albus
ENSPNAG00000008443	polr1c	99	65.732	MGP_CAROLIEiJ_G0021662	Polr1c	100	71.923	Mus_caroli
ENSPNAG00000008443	polr1c	66	30.493	ENSMUSG00000031783	Polr2c	51	39.535	Mus_musculus
ENSPNAG00000008443	polr1c	99	73.333	ENSMUSG00000067148	Polr1c	98	76.238	Mus_musculus
ENSPNAG00000008443	polr1c	99	73.333	MGP_PahariEiJ_G0020654	Polr1c	98	77.228	Mus_pahari
ENSPNAG00000008443	polr1c	99	73.333	MGP_SPRETEiJ_G0022574	Polr1c	98	76.238	Mus_spretus
ENSPNAG00000008443	polr1c	99	73.333	ENSMPUG00000012916	POLR1C	91	73.333	Mustela_putorius_furo
ENSPNAG00000008443	polr1c	99	73.913	ENSMLUG00000017751	POLR1C	99	73.913	Myotis_lucifugus
ENSPNAG00000008443	polr1c	99	72.754	ENSNGAG00000023487	Polr1c	100	73.540	Nannospalax_galili
ENSPNAG00000008443	polr1c	100	84.046	ENSNBRG00000018742	polr1c	100	84.615	Neolamprologus_brichardi
ENSPNAG00000008443	polr1c	53	30.857	ENSNLEG00000003034	POLR2C	63	30.857	Nomascus_leucogenys
ENSPNAG00000008443	polr1c	99	73.043	ENSNLEG00000004035	POLR1C	99	73.043	Nomascus_leucogenys
ENSPNAG00000008443	polr1c	98	63.824	ENSMEUG00000006778	POLR1C	98	63.824	Notamacropus_eugenii
ENSPNAG00000008443	polr1c	77	74.060	ENSOPRG00000000145	POLR1C	99	74.060	Ochotona_princeps
ENSPNAG00000008443	polr1c	68	70.776	ENSODEG00000017109	-	100	70.776	Octodon_degus
ENSPNAG00000008443	polr1c	99	74.493	ENSODEG00000015831	-	99	74.493	Octodon_degus
ENSPNAG00000008443	polr1c	100	83.761	ENSONIG00000013133	polr1c	98	84.330	Oreochromis_niloticus
ENSPNAG00000008443	polr1c	99	71.884	ENSOANG00000003043	POLR1C	99	71.884	Ornithorhynchus_anatinus
ENSPNAG00000008443	polr1c	99	73.333	ENSOCUG00000005504	POLR1C	99	73.333	Oryctolagus_cuniculus
ENSPNAG00000008443	polr1c	99	77.874	ENSORLG00000019743	polr1c	99	77.874	Oryzias_latipes
ENSPNAG00000008443	polr1c	99	78.736	ENSORLG00020006489	POLR1C	99	78.736	Oryzias_latipes_hni
ENSPNAG00000008443	polr1c	82	62.909	ENSORLG00020005555	polr1c	81	63.139	Oryzias_latipes_hni
ENSPNAG00000008443	polr1c	99	78.161	ENSORLG00015013322	polr1c	99	78.161	Oryzias_latipes_hsok
ENSPNAG00000008443	polr1c	98	79.420	ENSOMEG00000016527	polr1c	98	79.420	Oryzias_melastigma
ENSPNAG00000008443	polr1c	99	73.199	ENSOGAG00000016318	POLR1C	99	73.199	Otolemur_garnettii
ENSPNAG00000008443	polr1c	99	73.913	ENSOARG00000007503	POLR1C	99	73.913	Ovis_aries
ENSPNAG00000008443	polr1c	55	30.151	ENSPPAG00000042822	POLR2C	69	30.151	Pan_paniscus
ENSPNAG00000008443	polr1c	99	73.043	ENSPPAG00000043678	POLR1C	99	73.043	Pan_paniscus
ENSPNAG00000008443	polr1c	99	73.043	ENSPPRG00000009760	POLR1C	99	73.043	Panthera_pardus
ENSPNAG00000008443	polr1c	99	73.043	ENSPTIG00000014813	POLR1C	99	73.043	Panthera_tigris_altaica
ENSPNAG00000008443	polr1c	99	73.043	ENSPTRG00000018202	POLR1C	99	73.043	Pan_troglodytes
ENSPNAG00000008443	polr1c	99	73.043	ENSPANG00000009025	POLR1C	99	73.043	Papio_anubis
ENSPNAG00000008443	polr1c	100	83.285	ENSPKIG00000009858	polr1c	100	83.285	Paramormyrops_kingsleyae
ENSPNAG00000008443	polr1c	98	79.706	ENSPSIG00000012580	POLR1C	93	79.706	Pelodiscus_sinensis
ENSPNAG00000008443	polr1c	100	69.452	ENSPMGG00000012121	polr1c	100	69.741	Periophthalmus_magnuspinnatus
ENSPNAG00000008443	polr1c	61	32.338	ENSPMGG00000021249	polr2c	78	32.338	Periophthalmus_magnuspinnatus
ENSPNAG00000008443	polr1c	99	72.754	ENSPEMG00000006970	Polr1c	99	72.754	Peromyscus_maniculatus_bairdii
ENSPNAG00000008443	polr1c	99	71.264	ENSPMAG00000005560	polr1c	99	71.264	Petromyzon_marinus
ENSPNAG00000008443	polr1c	63	33.649	ENSPMAG00000004827	polr2c	86	33.649	Petromyzon_marinus
ENSPNAG00000008443	polr1c	98	76.176	ENSPCIG00000028137	POLR1C	97	76.176	Phascolarctos_cinereus
ENSPNAG00000008443	polr1c	100	81.766	ENSPFOG00000014357	polr1c	98	82.051	Poecilia_formosa
ENSPNAG00000008443	polr1c	100	81.766	ENSPFOG00000014342	POLR1C	100	82.051	Poecilia_formosa
ENSPNAG00000008443	polr1c	74	77.824	ENSPLAG00000004111	polr1c	99	77.824	Poecilia_latipinna
ENSPNAG00000008443	polr1c	100	81.766	ENSPMEG00000008420	polr1c	100	82.051	Poecilia_mexicana
ENSPNAG00000008443	polr1c	100	81.766	ENSPMEG00000011877	-	100	82.051	Poecilia_mexicana
ENSPNAG00000008443	polr1c	100	82.997	ENSPREG00000007985	polr1c	100	82.997	Poecilia_reticulata
ENSPNAG00000008443	polr1c	99	73.043	ENSPPYG00000016645	POLR1C	99	73.043	Pongo_abelii
ENSPNAG00000008443	polr1c	99	73.043	ENSPCOG00000024628	POLR1C	99	73.043	Propithecus_coquereli
ENSPNAG00000008443	polr1c	99	66.957	ENSPVAG00000005689	POLR1C	99	66.957	Pteropus_vampyrus
ENSPNAG00000008443	polr1c	100	83.569	ENSPNYG00000003620	polr1c	100	84.046	Pundamilia_nyererei
ENSPNAG00000008443	polr1c	99	72.754	ENSRNOG00000019079	Polr1c	99	72.754	Rattus_norvegicus
ENSPNAG00000008443	polr1c	99	73.333	ENSRBIG00000007155	POLR1C	99	73.333	Rhinopithecus_bieti
ENSPNAG00000008443	polr1c	99	73.043	ENSRROG00000000257	POLR1C	99	73.043	Rhinopithecus_roxellana
ENSPNAG00000008443	polr1c	92	49.844	YPR110C	RPC40	95	49.844	Saccharomyces_cerevisiae
ENSPNAG00000008443	polr1c	99	73.043	ENSSBOG00000025735	POLR1C	99	73.529	Saimiri_boliviensis_boliviensis
ENSPNAG00000008443	polr1c	98	67.941	ENSSHAG00000014456	POLR1C	98	67.941	Sarcophilus_harrisii
ENSPNAG00000008443	polr1c	100	87.608	ENSSFOG00015019860	polr1c	100	87.608	Scleropages_formosus
ENSPNAG00000008443	polr1c	79	30.108	ENSSFOG00015023460	polr2c	87	30.108	Scleropages_formosus
ENSPNAG00000008443	polr1c	100	83.285	ENSSMAG00000018865	polr1c	100	83.285	Scophthalmus_maximus
ENSPNAG00000008443	polr1c	100	83.476	ENSSDUG00000015745	polr1c	91	84.046	Seriola_dumerili
ENSPNAG00000008443	polr1c	100	83.191	ENSSLDG00000018285	polr1c	91	83.761	Seriola_lalandi_dorsalis
ENSPNAG00000008443	polr1c	99	72.595	ENSSPUG00000011822	POLR1C	99	72.595	Sphenodon_punctatus
ENSPNAG00000008443	polr1c	100	80.342	ENSSPAG00000022369	polr1c	100	80.912	Stegastes_partitus
ENSPNAG00000008443	polr1c	99	73.623	ENSSSCG00000028007	POLR1C	98	73.623	Sus_scrofa
ENSPNAG00000008443	polr1c	96	75.904	ENSTGUG00000009159	POLR1C	99	75.904	Taeniopygia_guttata
ENSPNAG00000008443	polr1c	100	78.917	ENSTRUG00000006264	polr1c	100	78.917	Takifugu_rubripes
ENSPNAG00000008443	polr1c	55	69.101	ENSTBEG00000002254	POLR1C	100	69.101	Tupaia_belangeri
ENSPNAG00000008443	polr1c	81	71.103	ENSTTRG00000006344	POLR1C	76	71.103	Tursiops_truncatus
ENSPNAG00000008443	polr1c	99	73.333	ENSUAMG00000025602	POLR1C	99	73.333	Ursus_americanus
ENSPNAG00000008443	polr1c	99	73.333	ENSUMAG00000005938	POLR1C	99	73.333	Ursus_maritimus
ENSPNAG00000008443	polr1c	99	71.014	ENSVVUG00000028922	POLR1C	99	71.014	Vulpes_vulpes
ENSPNAG00000008443	polr1c	79	30.037	ENSVVUG00000023516	-	86	30.037	Vulpes_vulpes
ENSPNAG00000008443	polr1c	63	33.171	ENSXETG00000013784	polr2c	71	33.171	Xenopus_tropicalis
ENSPNAG00000008443	polr1c	100	70.690	ENSXETG00000010882	polr1c	100	70.690	Xenopus_tropicalis
ENSPNAG00000008443	polr1c	100	82.759	ENSXCOG00000014185	polr1c	100	82.759	Xiphophorus_couchianus
ENSPNAG00000008443	polr1c	100	82.051	ENSXMAG00000015076	polr1c	100	82.336	Xiphophorus_maculatus