EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000008541 (Gene tree)
Gene ID: 108438154
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 17940 bases
Position: chrKV575546.1:422066-440005
Accession: 108438154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000024072	KH_1	PF00013.29	2.7e-54	1	3
ENSPNAP00000024072	KH_1	PF00013.29	2.7e-54	2	3
ENSPNAP00000024072	KH_1	PF00013.29	2.7e-54	3	3
ENSPNAP00000024042	KH_1	PF00013.29	3.3e-50	1	3
ENSPNAP00000024042	KH_1	PF00013.29	3.3e-50	2	3
ENSPNAP00000024042	KH_1	PF00013.29	3.3e-50	3	3
ENSPNAP00000024072	KH_2	PF07650.17	2.8e-14	1	1
ENSPNAP00000024042	KH_2	PF07650.17	8.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000011094	-	4406	XM_017715760	ENSPNAP00000024072	350 (aa)	XP_017571249	UPI0008149443
ENSPNAT00000011122	-	921	-	ENSPNAP00000024042	306 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000008541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000008541's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000008541	-	92	39.062	ENSPNAG00000012026	khsrp	59	39.062
ENSPNAG00000008541	-	93	31.852	ENSPNAG00000000470	igf2bp3	60	31.852
ENSPNAG00000008541	-	95	75.362	ENSPNAG00000004501	zgc:110045	92	75.362
ENSPNAG00000008541	-	91	39.683	ENSPNAG00000013478	fubp3	74	30.534
ENSPNAG00000008541	-	92	31.250	ENSPNAG00000015781	igf2bp1	60	31.250
ENSPNAG00000008541	-	97	64.571	ENSPNAG00000025434	pcbp4	74	64.571
ENSPNAG00000008541	-	95	78.073	ENSPNAG00000001885	pcbp2	94	78.073
ENSPNAG00000008541	-	73	55.556	ENSPNAG00000017193	hnrnpk	60	55.556
ENSPNAG00000008541	-	95	73.333	ENSPNAG00000009446	-	94	73.333
ENSPNAG00000008541	-	91	40.000	ENSPNAG00000009171	nova2	85	31.073
ENSPNAG00000008541	-	98	93.506	ENSPNAG00000015104	pcbp3	96	93.506
ENSPNAG00000008541	-	91	40.000	ENSPNAG00000024351	nova1	92	31.638
ENSPNAG00000008541	-	74	57.143	ENSPNAG00000007549	hnrpkl	50	57.143
ENSPNAG00000008541	-	92	35.338	ENSPNAG00000011228	igf2bp2b	60	35.338

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000008541	-	98	95.333	ENSAPOG00000020003	pcbp3	86	95.333	Acanthochromis_polyacanthus
ENSPNAG00000008541	-	98	93.506	ENSAPOG00000016582	-	100	88.889	Acanthochromis_polyacanthus
ENSPNAG00000008541	-	96	86.875	ENSAMEG00000001697	-	96	86.647	Ailuropoda_melanoleuca
ENSPNAG00000008541	-	100	92.308	ENSACIG00000010933	pcbp3	100	92.308	Amphilophus_citrinellus
ENSPNAG00000008541	-	98	91.987	ENSACIG00000002739	-	96	91.987	Amphilophus_citrinellus
ENSPNAG00000008541	-	98	92.857	ENSAOCG00000008592	-	97	92.857	Amphiprion_ocellaris
ENSPNAG00000008541	-	88	91.071	ENSAOCG00000007806	-	96	91.071	Amphiprion_ocellaris
ENSPNAG00000008541	-	100	94.051	ENSAPEG00000008011	pcbp3	100	94.051	Amphiprion_percula
ENSPNAG00000008541	-	98	93.791	ENSAPEG00000005209	-	96	93.791	Amphiprion_percula
ENSPNAG00000008541	-	98	95.050	ENSATEG00000009833	-	96	95.050	Anabas_testudineus
ENSPNAG00000008541	-	95	92.515	ENSATEG00000015787	-	100	92.515	Anabas_testudineus
ENSPNAG00000008541	-	96	88.571	ENSAPLG00000002975	-	95	88.571	Anas_platyrhynchos
ENSPNAG00000008541	-	98	77.717	ENSAPLG00000008951	-	82	77.717	Anas_platyrhynchos
ENSPNAG00000008541	-	95	86.405	ENSACAG00000009819	-	96	86.405	Anolis_carolinensis
ENSPNAG00000008541	-	93	89.655	ENSACAG00000004607	-	96	89.655	Anolis_carolinensis
ENSPNAG00000008541	-	91	86.347	ENSANAG00000030702	-	95	93.778	Aotus_nancymaae
ENSPNAG00000008541	-	100	93.768	ENSACLG00000011835	pcbp3	100	93.768	Astatotilapia_calliptera
ENSPNAG00000008541	-	98	95.333	ENSACLG00000003801	-	96	95.333	Astatotilapia_calliptera
ENSPNAG00000008541	-	100	95.157	ENSAMXG00000003440	pcbp3	100	95.157	Astyanax_mexicanus
ENSPNAG00000008541	-	98	99.333	ENSAMXG00000013588	-	99	99.333	Astyanax_mexicanus
ENSPNAG00000008541	-	96	69.159	ENSAMXG00000001760	zgc:110045	72	69.159	Astyanax_mexicanus
ENSPNAG00000008541	-	91	92.140	ENSCAFG00020019472	-	81	92.140	Canis_lupus_dingo
ENSPNAG00000008541	-	96	92.359	ENSCSAG00000007440	-	86	92.359	Chlorocebus_sabaeus
ENSPNAG00000008541	-	96	93.023	ENSCPBG00000012151	-	90	93.023	Chrysemys_picta_bellii
ENSPNAG00000008541	-	99	83.237	ENSCPBG00000000733	-	73	87.500	Chrysemys_picta_bellii
ENSPNAG00000008541	-	98	77.914	ENSCSEG00000016984	-	96	77.914	Cynoglossus_semilaevis
ENSPNAG00000008541	-	98	94.667	ENSCSEG00000000822	pcbp3	98	94.667	Cynoglossus_semilaevis
ENSPNAG00000008541	-	100	94.318	ENSCVAG00000014482	pcbp3	100	94.318	Cyprinodon_variegatus
ENSPNAG00000008541	-	98	93.137	ENSCVAG00000005262	-	96	93.137	Cyprinodon_variegatus
ENSPNAG00000008541	-	100	95.157	ENSDARG00000054378	pcbp3	100	95.157	Danio_rerio
ENSPNAG00000008541	-	96	80.066	ENSETEG00000015988	-	94	80.066	Echinops_telfairi
ENSPNAG00000008541	-	71	70.796	ENSEBUG00000005495	pcbp3	74	66.397	Eptatretus_burgeri
ENSPNAG00000008541	-	87	73.783	ENSEBUG00000016192	pcbp3	99	73.783	Eptatretus_burgeri
ENSPNAG00000008541	-	96	77.451	ENSEBUG00000007485	-	92	77.626	Eptatretus_burgeri
ENSPNAG00000008541	-	98	92.857	ENSELUG00000001560	-	96	84.570	Esox_lucius
ENSPNAG00000008541	-	100	94.068	ENSELUG00000003521	pcbp3	100	94.068	Esox_lucius
ENSPNAG00000008541	-	96	92.359	ENSFALG00000003949	-	94	92.359	Ficedula_albicollis
ENSPNAG00000008541	-	98	77.717	ENSFALG00000004411	-	77	77.717	Ficedula_albicollis
ENSPNAG00000008541	-	98	95.000	ENSFHEG00000016615	pcbp3	94	95.000	Fundulus_heteroclitus
ENSPNAG00000008541	-	98	93.464	ENSFHEG00000006539	-	96	93.464	Fundulus_heteroclitus
ENSPNAG00000008541	-	99	76.647	ENSGMOG00000011992	pcbp3	97	76.647	Gadus_morhua
ENSPNAG00000008541	-	97	67.781	ENSGMOG00000008611	-	99	67.781	Gadus_morhua
ENSPNAG00000008541	-	93	87.117	ENSGALG00000013155	-	98	84.098	Gallus_gallus
ENSPNAG00000008541	-	93	87.608	ENSGALG00000004394	-	98	88.587	Gallus_gallus
ENSPNAG00000008541	-	98	92.857	ENSGAFG00000010274	-	100	88.319	Gambusia_affinis
ENSPNAG00000008541	-	95	90.719	ENSGAFG00000011430	pcbp3	96	90.719	Gambusia_affinis
ENSPNAG00000008541	-	99	86.322	ENSGACG00000002266	-	96	86.322	Gasterosteus_aculeatus
ENSPNAG00000008541	-	95	81.921	ENSGACG00000014955	-	97	81.921	Gasterosteus_aculeatus
ENSPNAG00000008541	-	77	89.674	ENSGAGG00000006956	-	93	82.128	Gopherus_agassizii
ENSPNAG00000008541	-	87	88.015	ENSGAGG00000000271	-	100	88.015	Gopherus_agassizii
ENSPNAG00000008541	-	100	94.318	ENSHBUG00000010697	pcbp3	100	94.318	Haplochromis_burtoni
ENSPNAG00000008541	-	98	95.333	ENSHBUG00000021782	-	96	95.333	Haplochromis_burtoni
ENSPNAG00000008541	-	98	87.987	ENSHCOG00000006067	-	96	87.987	Hippocampus_comes
ENSPNAG00000008541	-	100	94.587	ENSHCOG00000017868	pcbp3	100	94.587	Hippocampus_comes
ENSPNAG00000008541	-	98	96.000	ENSIPUG00000006238	pcbp3	99	93.605	Ictalurus_punctatus
ENSPNAG00000008541	-	100	94.051	ENSKMAG00000003046	pcbp3	100	94.051	Kryptolebias_marmoratus
ENSPNAG00000008541	-	98	91.883	ENSKMAG00000018530	-	100	87.464	Kryptolebias_marmoratus
ENSPNAG00000008541	-	98	94.059	ENSLBEG00000006201	pcbp3	95	94.059	Labrus_bergylta
ENSPNAG00000008541	-	98	80.000	ENSLBEG00000006542	-	100	78.286	Labrus_bergylta
ENSPNAG00000008541	-	99	77.236	ENSLACG00000010804	zgc:110045	77	77.236	Latimeria_chalumnae
ENSPNAG00000008541	-	94	88.068	ENSLACG00000010386	pcbp3	74	88.068	Latimeria_chalumnae
ENSPNAG00000008541	-	93	85.933	ENSLOCG00000005058	zgc:110045	80	85.933	Lepisosteus_oculatus
ENSPNAG00000008541	-	96	93.175	ENSLOCG00000009369	pcbp3	98	93.175	Lepisosteus_oculatus
ENSPNAG00000008541	-	98	93.729	ENSMAMG00000011620	-	96	93.729	Mastacembelus_armatus
ENSPNAG00000008541	-	98	95.000	ENSMAMG00000022336	pcbp3	92	95.000	Mastacembelus_armatus
ENSPNAG00000008541	-	100	92.023	ENSMZEG00005008993	pcbp3	100	92.023	Maylandia_zebra
ENSPNAG00000008541	-	98	87.781	ENSMZEG00005014882	-	100	85.552	Maylandia_zebra
ENSPNAG00000008541	-	96	77.616	ENSMGAG00000001883	-	96	80.398	Meleagris_gallopavo
ENSPNAG00000008541	-	98	77.989	ENSMGAG00000006794	-	77	77.989	Meleagris_gallopavo
ENSPNAG00000008541	-	98	90.323	ENSMMOG00000000730	pcbp3	87	90.323	Mola_mola
ENSPNAG00000008541	-	98	95.333	ENSMMOG00000005216	-	96	95.333	Mola_mola
ENSPNAG00000008541	-	68	84.651	ENSMODG00000027884	-	93	84.651	Monodelphis_domestica
ENSPNAG00000008541	-	100	91.761	ENSMALG00000000691	pcbp3	100	91.761	Monopterus_albus
ENSPNAG00000008541	-	96	83.125	ENSMPUG00000001779	-	87	83.125	Mustela_putorius_furo
ENSPNAG00000008541	-	100	87.640	ENSNBRG00000016714	-	100	87.640	Neolamprologus_brichardi
ENSPNAG00000008541	-	100	92.571	ENSNBRG00000016409	-	100	92.571	Neolamprologus_brichardi
ENSPNAG00000008541	-	94	87.106	ENSOPRG00000003431	-	99	87.106	Ochotona_princeps
ENSPNAG00000008541	-	95	89.518	ENSONIG00000012122	-	98	89.518	Oreochromis_niloticus
ENSPNAG00000008541	-	98	92.857	ENSONIG00000004611	-	96	92.857	Oreochromis_niloticus
ENSPNAG00000008541	-	96	91.694	ENSOCUG00000002696	-	86	91.694	Oryctolagus_cuniculus
ENSPNAG00000008541	-	98	92.857	ENSORLG00000000059	pcbp3	99	92.857	Oryzias_latipes
ENSPNAG00000008541	-	98	92.857	ENSORLG00000022739	-	96	92.857	Oryzias_latipes
ENSPNAG00000008541	-	98	95.000	ENSORLG00020006124	-	96	95.000	Oryzias_latipes_hni
ENSPNAG00000008541	-	98	92.857	ENSORLG00020012671	pcbp3	97	92.857	Oryzias_latipes_hni
ENSPNAG00000008541	-	98	92.857	ENSORLG00015008051	-	99	88.286	Oryzias_latipes_hsok
ENSPNAG00000008541	-	98	92.857	ENSORLG00015000429	pcbp3	97	92.857	Oryzias_latipes_hsok
ENSPNAG00000008541	-	98	95.333	ENSOMEG00000020162	-	96	95.333	Oryzias_melastigma
ENSPNAG00000008541	-	90	94.928	ENSOMEG00000020811	pcbp3	96	94.928	Oryzias_melastigma
ENSPNAG00000008541	-	93	82.720	ENSOGAG00000008044	-	96	82.720	Otolemur_garnettii
ENSPNAG00000008541	-	98	95.033	ENSPKIG00000019329	pcbp3	96	95.033	Paramormyrops_kingsleyae
ENSPNAG00000008541	-	80	83.854	ENSPKIG00000020913	-	86	83.854	Paramormyrops_kingsleyae
ENSPNAG00000008541	-	94	80.843	ENSPSIG00000008350	-	72	80.843	Pelodiscus_sinensis
ENSPNAG00000008541	-	96	78.931	ENSPSIG00000014970	-	95	79.560	Pelodiscus_sinensis
ENSPNAG00000008541	-	100	94.302	ENSPMGG00000022383	pcbp3	100	94.302	Periophthalmus_magnuspinnatus
ENSPNAG00000008541	-	77	84.043	ENSPMAG00000004637	-	97	88.298	Petromyzon_marinus
ENSPNAG00000008541	-	96	73.290	ENSPMAG00000004551	pcbp3	88	73.290	Petromyzon_marinus
ENSPNAG00000008541	-	93	94.817	ENSPCIG00000028092	-	96	94.817	Phascolarctos_cinereus
ENSPNAG00000008541	-	97	91.262	ENSPLAG00000004074	-	89	91.262	Poecilia_latipinna
ENSPNAG00000008541	-	100	79.750	ENSPLAG00000011449	pcbp3	100	79.750	Poecilia_latipinna
ENSPNAG00000008541	-	99	87.821	ENSPMEG00000006653	-	100	86.571	Poecilia_mexicana
ENSPNAG00000008541	-	100	93.239	ENSPMEG00000021239	pcbp3	100	93.239	Poecilia_mexicana
ENSPNAG00000008541	-	98	93.046	ENSPREG00000015736	pcbp3	99	93.046	Poecilia_reticulata
ENSPNAG00000008541	-	98	95.333	ENSPREG00000020585	-	96	95.333	Poecilia_reticulata
ENSPNAG00000008541	-	98	95.333	ENSPNYG00000013205	-	96	95.333	Pundamilia_nyererei
ENSPNAG00000008541	-	98	92.532	ENSPNYG00000012326	pcbp3	95	92.532	Pundamilia_nyererei
ENSPNAG00000008541	-	96	92.359	ENSRNOG00000001245	Pcbp3	94	92.359	Rattus_norvegicus
ENSPNAG00000008541	-	96	82.748	ENSRBIG00000028177	-	98	77.989	Rhinopithecus_bieti
ENSPNAG00000008541	-	96	86.604	ENSSHAG00000007890	-	95	86.604	Sarcophilus_harrisii
ENSPNAG00000008541	-	98	93.182	ENSSFOG00015010205	pcbp3	100	93.694	Scleropages_formosus
ENSPNAG00000008541	-	95	84.950	ENSSFOG00015007118	-	92	84.950	Scleropages_formosus
ENSPNAG00000008541	-	100	93.429	ENSSFOG00015014706	pcbp3	100	93.429	Scleropages_formosus
ENSPNAG00000008541	-	98	95.333	ENSSMAG00000011929	pcbp3	97	95.333	Scophthalmus_maximus
ENSPNAG00000008541	-	98	94.098	ENSSMAG00000003135	-	96	94.098	Scophthalmus_maximus
ENSPNAG00000008541	-	98	90.032	ENSSDUG00000008502	-	100	87.714	Seriola_dumerili
ENSPNAG00000008541	-	95	92.239	ENSSDUG00000011608	pcbp3	99	92.239	Seriola_dumerili
ENSPNAG00000008541	-	95	92.239	ENSSLDG00000008518	pcbp3	99	92.239	Seriola_lalandi_dorsalis
ENSPNAG00000008541	-	98	93.506	ENSSLDG00000020161	-	100	88.889	Seriola_lalandi_dorsalis
ENSPNAG00000008541	-	91	84.775	ENSSPUG00000013214	-	90	86.294	Sphenodon_punctatus
ENSPNAG00000008541	-	100	81.766	ENSSPAG00000023341	-	100	81.766	Stegastes_partitus
ENSPNAG00000008541	-	88	91.071	ENSSPAG00000004190	-	96	91.071	Stegastes_partitus
ENSPNAG00000008541	-	96	86.711	ENSTGUG00000008158	-	95	86.711	Taeniopygia_guttata
ENSPNAG00000008541	-	96	84.424	ENSTGUG00000003316	-	95	84.424	Taeniopygia_guttata
ENSPNAG00000008541	-	100	89.143	ENSTRUG00000013604	pcbp3	100	89.143	Takifugu_rubripes
ENSPNAG00000008541	-	97	88.963	ENSTRUG00000006280	-	95	88.963	Takifugu_rubripes
ENSPNAG00000008541	-	93	87.320	ENSTTRG00000015075	-	96	87.320	Tursiops_truncatus
ENSPNAG00000008541	-	95	76.271	ENSXETG00000010491	pcbp2	77	76.271	Xenopus_tropicalis
ENSPNAG00000008541	-	96	87.227	ENSXETG00000011483	pcbp1	95	87.227	Xenopus_tropicalis
ENSPNAG00000008541	-	100	93.239	ENSXCOG00000020481	pcbp3	100	93.239	Xiphophorus_couchianus
ENSPNAG00000008541	-	100	94.051	ENSXMAG00000008175	pcbp3	100	94.051	Xiphophorus_maculatus
ENSPNAG00000008541	-	98	93.182	ENSXMAG00000028711	-	100	88.604	Xiphophorus_maculatus