EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000008867 (Gene tree)
Gene ID: 108431495
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 8026 bases
Position: chrKV575388.1:2456512-2464537
Accession: 108431495
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000024355	MMR_HSR1	PF01926.23	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000010345	-	726	XM_017704699	ENSPNAP00000024355	241 (aa)	XP_017560188	-

Gene Model

Click here to download ENSPNAG00000008867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000008867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000008867	rab20	58	33.333	ENSPNAG00000029574	zgc:171927	56	35.043
ENSPNAG00000008867	rab20	50	36.000	ENSPNAG00000006431	-	57	36.000
ENSPNAG00000008867	rab20	50	36.000	ENSPNAG00000020475	rab11ba	57	36.000
ENSPNAG00000008867	rab20	54	33.577	ENSPNAG00000021994	rab36	50	33.577
ENSPNAG00000008867	rab20	54	37.778	ENSPNAG00000002218	-	62	37.778
ENSPNAG00000008867	rab20	50	37.600	ENSPNAG00000029085	rab11al	58	37.600
ENSPNAG00000008867	rab20	55	35.036	ENSPNAG00000000694	rab25a	63	35.036
ENSPNAG00000008867	rab20	55	30.714	ENSPNAG00000003179	rab34a	54	30.714
ENSPNAG00000008867	rab20	99	30.120	ENSPNAG00000017938	RAB9A	89	30.204
ENSPNAG00000008867	rab20	97	30.081	ENSPNAG00000014046	-	96	30.081
ENSPNAG00000008867	rab20	82	30.049	ENSPNAG00000005519	-	71	31.034
ENSPNAG00000008867	rab20	50	34.646	ENSPNAG00000029115	rab33ba	57	34.646
ENSPNAG00000008867	rab20	50	36.800	ENSPNAG00000014863	rab11a	66	36.800
ENSPNAG00000008867	rab20	50	33.600	ENSPNAG00000006569	rab25b	59	33.600

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000008867	rab20	99	71.595	ENSATEG00000011117	rab20	100	70.039	Anabas_testudineus
ENSPNAG00000008867	rab20	99	63.485	ENSAPLG00000011744	RAB20	99	63.485	Anas_platyrhynchos
ENSPNAG00000008867	rab20	99	62.605	ENSACAG00000014045	RAB20	99	62.605	Anolis_carolinensis
ENSPNAG00000008867	rab20	100	80.894	ENSAMXG00000003504	rab20	100	79.757	Astyanax_mexicanus
ENSPNAG00000008867	rab20	99	65.126	ENSCPBG00000005866	RAB20	99	63.866	Chrysemys_picta_bellii
ENSPNAG00000008867	rab20	99	73.554	ENSCSEG00000011160	rab20	100	72.314	Cynoglossus_semilaevis
ENSPNAG00000008867	rab20	99	79.253	ENSDARG00000005049	rab20	97	78.243	Danio_rerio
ENSPNAG00000008867	rab20	99	70.312	ENSELUG00000004092	rab20	98	69.531	Esox_lucius
ENSPNAG00000008867	rab20	99	64.583	ENSFALG00000004409	RAB20	99	64.583	Ficedula_albicollis
ENSPNAG00000008867	rab20	99	74.286	ENSGACG00000003527	rab20	100	72.653	Gasterosteus_aculeatus
ENSPNAG00000008867	rab20	99	68.775	ENSHCOG00000013468	rab20	98	67.589	Hippocampus_comes
ENSPNAG00000008867	rab20	99	79.583	ENSIPUG00000018288	RAB20	97	79.583	Ictalurus_punctatus
ENSPNAG00000008867	rab20	99	79.583	ENSIPUG00000000432	RAB20	97	79.583	Ictalurus_punctatus
ENSPNAG00000008867	rab20	99	66.527	ENSLACG00000011001	RAB20	99	66.527	Latimeria_chalumnae
ENSPNAG00000008867	rab20	99	71.484	ENSMAMG00000015214	rab20	98	69.231	Mastacembelus_armatus
ENSPNAG00000008867	rab20	99	71.311	ENSMMOG00000020022	rab20	100	71.311	Mola_mola
ENSPNAG00000008867	rab20	99	62.917	ENSMEUG00000009442	RAB20	99	61.475	Notamacropus_eugenii
ENSPNAG00000008867	rab20	86	50.917	ENSPMAG00000004439	rab20	98	51.152	Petromyzon_marinus
ENSPNAG00000008867	rab20	99	69.020	ENSSMAG00000018818	rab20	100	68.235	Scophthalmus_maximus
ENSPNAG00000008867	rab20	99	71.595	ENSSDUG00000005148	rab20	98	70.817	Seriola_dumerili
ENSPNAG00000008867	rab20	99	64.167	ENSTGUG00000008797	RAB20	99	64.167	Taeniopygia_guttata
ENSPNAG00000008867	rab20	99	67.315	ENSTRUG00000022951	rab20	98	66.537	Takifugu_rubripes
ENSPNAG00000008867	rab20	94	71.616	ENSTNIG00000013920	rab20	100	68.852	Tetraodon_nigroviridis