EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000009357 (Gene tree)
Gene ID: 108438117
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 17888 bases
Position: chrKV575545.1:704806-722693
Accession: 108438117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000002991	Upf2	PF04050.14	3.7e-32	1	1
ENSPNAP00000024674	Upf2	PF04050.14	3.7e-32	1	1
ENSPNAP00000002968	Upf2	PF04050.14	3.8e-32	1	1
ENSPNAP00000002920	Upf2	PF04050.14	4.5e-32	1	1
ENSPNAP00000002968	MIF4G	PF02854.19	5.7e-79	1	2
ENSPNAP00000002968	MIF4G	PF02854.19	5.7e-79	2	2
ENSPNAP00000002991	MIF4G	PF02854.19	6.2e-79	1	2
ENSPNAP00000002991	MIF4G	PF02854.19	6.2e-79	2	2
ENSPNAP00000024674	MIF4G	PF02854.19	6.2e-79	1	2
ENSPNAP00000024674	MIF4G	PF02854.19	6.2e-79	2	2
ENSPNAP00000002920	MIF4G	PF02854.19	1.9e-66	1	2
ENSPNAP00000002920	MIF4G	PF02854.19	1.9e-66	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000009514	UPF2-202	5785	XM_017715697	ENSPNAP00000024674	1292 (aa)	XP_017571186	UPI0008148D13
ENSPNAT00000009551	UPF2-203	5746	-	ENSPNAP00000002968	1279 (aa)	-	-
ENSPNAT00000009495	UPF2-201	5498	XM_017715696	ENSPNAP00000002991	1292 (aa)	XP_017571185	UPI0008148D13
ENSPNAT00000009609	UPF2-204	3768	XM_017715699	ENSPNAP00000002920	1255 (aa)	XP_017571188	-

Gene Model

Click here to download ENSPNAG00000009357's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000009357's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000009357	UPF2	100	83.242	ENSG00000151461	UPF2	100	82.775	Homo_sapiens
ENSPNAG00000009357	UPF2	100	83.635	ENSAPOG00000015837	UPF2	100	83.737	Acanthochromis_polyacanthus
ENSPNAG00000009357	UPF2	100	83.931	ENSAMEG00000004586	UPF2	100	83.385	Ailuropoda_melanoleuca
ENSPNAG00000009357	UPF2	99	89.696	ENSACIG00000018078	UPF2	100	89.461	Amphilophus_citrinellus
ENSPNAG00000009357	UPF2	100	89.782	ENSAOCG00000016766	UPF2	100	89.470	Amphiprion_ocellaris
ENSPNAG00000009357	UPF2	100	89.860	ENSAPEG00000019084	UPF2	100	89.548	Amphiprion_percula
ENSPNAG00000009357	UPF2	100	89.478	ENSATEG00000021677	UPF2	99	89.634	Anabas_testudineus
ENSPNAG00000009357	UPF2	100	79.969	ENSAPLG00000010287	UPF2	91	82.750	Anas_platyrhynchos
ENSPNAG00000009357	UPF2	100	84.087	ENSACAG00000009259	UPF2	100	83.541	Anolis_carolinensis
ENSPNAG00000009357	UPF2	91	79.897	ENSANAG00000028451	UPF2	93	79.299	Aotus_nancymaae
ENSPNAG00000009357	UPF2	100	89.712	ENSACLG00000012696	UPF2	100	89.478	Astatotilapia_calliptera
ENSPNAG00000009357	UPF2	99	95.928	ENSAMXG00000013700	UPF2	99	95.928	Astyanax_mexicanus
ENSPNAG00000009357	UPF2	100	84.009	ENSBTAG00000000288	UPF2	100	83.463	Bos_taurus
ENSPNAG00000009357	UPF2	100	82.293	ENSCJAG00000020685	UPF2	100	82.449	Callithrix_jacchus
ENSPNAG00000009357	UPF2	100	84.087	ENSCAFG00000004839	UPF2	100	83.541	Canis_familiaris
ENSPNAG00000009357	UPF2	95	88.325	ENSCAFG00020005882	UPF2	99	88.776	Canis_lupus_dingo
ENSPNAG00000009357	UPF2	100	83.931	ENSCHIG00000020359	UPF2	100	83.385	Capra_hircus
ENSPNAG00000009357	UPF2	100	83.775	ENSTSYG00000000935	UPF2	97	87.571	Carlito_syrichta
ENSPNAG00000009357	UPF2	91	74.508	ENSCAPG00000016658	UPF2	95	74.743	Cavia_aperea
ENSPNAG00000009357	UPF2	99	79.890	ENSCPOG00000008809	UPF2	100	81.147	Cavia_porcellus
ENSPNAG00000009357	UPF2	100	76.755	ENSCCAG00000035991	UPF2	100	76.287	Cebus_capucinus
ENSPNAG00000009357	UPF2	100	83.164	ENSCATG00000032679	UPF2	100	82.697	Cercocebus_atys
ENSPNAG00000009357	UPF2	100	82.215	ENSCLAG00000011434	UPF2	100	82.761	Chinchilla_lanigera
ENSPNAG00000009357	UPF2	100	83.164	ENSCSAG00000013372	UPF2	100	82.697	Chlorocebus_sabaeus
ENSPNAG00000009357	UPF2	78	89.755	ENSCHOG00000000422	UPF2	82	91.589	Choloepus_hoffmanni
ENSPNAG00000009357	UPF2	99	83.359	ENSCPBG00000027823	UPF2	100	83.125	Chrysemys_picta_bellii
ENSPNAG00000009357	UPF2	79	47.679	ENSCSAVG00000007772	-	99	47.088	Ciona_savignyi
ENSPNAG00000009357	UPF2	99	77.984	ENSCANG00000040396	UPF2	100	78.142	Colobus_angolensis_palliatus
ENSPNAG00000009357	UPF2	100	84.153	ENSCGRG00001019347	Upf2	100	83.919	Cricetulus_griseus_chok1gshd
ENSPNAG00000009357	UPF2	100	84.153	ENSCGRG00000017993	Upf2	100	83.919	Cricetulus_griseus_crigri
ENSPNAG00000009357	UPF2	99	81.344	ENSCSEG00000003520	UPF2	99	80.870	Cynoglossus_semilaevis
ENSPNAG00000009357	UPF2	99	88.286	ENSCVAG00000006167	UPF2	100	87.962	Cyprinodon_variegatus
ENSPNAG00000009357	UPF2	100	83.619	ENSDNOG00000018160	UPF2	100	83.151	Dasypus_novemcinctus
ENSPNAG00000009357	UPF2	100	84.153	ENSDORG00000002478	Upf2	100	83.841	Dipodomys_ordii
ENSPNAG00000009357	UPF2	89	35.778	FBgn0029992	Upf2	90	38.303	Drosophila_melanogaster
ENSPNAG00000009357	UPF2	73	94.161	ENSETEG00000011583	-	72	94.161	Echinops_telfairi
ENSPNAG00000009357	UPF2	65	74.000	ENSEBUG00000012448	-	87	72.848	Eptatretus_burgeri
ENSPNAG00000009357	UPF2	100	82.839	ENSEASG00005019274	UPF2	100	84.241	Equus_asinus_asinus
ENSPNAG00000009357	UPF2	100	82.839	ENSECAG00000017022	UPF2	100	83.307	Equus_caballus
ENSPNAG00000009357	UPF2	82	76.415	ENSEEUG00000007819	UPF2	70	85.459	Erinaceus_europaeus
ENSPNAG00000009357	UPF2	99	87.617	ENSELUG00000012014	UPF2	100	88.863	Esox_lucius
ENSPNAG00000009357	UPF2	100	86.813	ENSFCAG00000005785	UPF2	100	83.463	Felis_catus
ENSPNAG00000009357	UPF2	100	83.931	ENSFALG00000001889	UPF2	98	84.009	Ficedula_albicollis
ENSPNAG00000009357	UPF2	100	82.436	ENSFDAG00000014348	UPF2	100	83.138	Fukomys_damarensis
ENSPNAG00000009357	UPF2	99	88.670	ENSFHEG00000009826	UPF2	100	88.749	Fundulus_heteroclitus
ENSPNAG00000009357	UPF2	90	87.554	ENSGMOG00000005557	UPF2	100	86.193	Gadus_morhua
ENSPNAG00000009357	UPF2	100	84.022	ENSGALG00000033772	UPF2	100	84.100	Gallus_gallus
ENSPNAG00000009357	UPF2	100	88.290	ENSGAFG00000020867	UPF2	100	88.212	Gambusia_affinis
ENSPNAG00000009357	UPF2	90	88.956	ENSGACG00000001080	UPF2	100	88.222	Gasterosteus_aculeatus
ENSPNAG00000009357	UPF2	100	83.853	ENSGAGG00000002700	UPF2	100	83.697	Gopherus_agassizii
ENSPNAG00000009357	UPF2	100	83.242	ENSGGOG00000001479	UPF2	100	82.775	Gorilla_gorilla
ENSPNAG00000009357	UPF2	100	89.634	ENSHBUG00000004249	UPF2	100	89.539	Haplochromis_burtoni
ENSPNAG00000009357	UPF2	100	73.465	ENSHGLG00000003822	-	99	73.513	Heterocephalus_glaber_female
ENSPNAG00000009357	UPF2	100	81.513	ENSHGLG00000015176	-	100	81.747	Heterocephalus_glaber_female
ENSPNAG00000009357	UPF2	87	85.791	ENSHGLG00100010036	UPF2	100	78.173	Heterocephalus_glaber_male
ENSPNAG00000009357	UPF2	100	87.102	ENSHCOG00000004025	UPF2	99	86.703	Hippocampus_comes
ENSPNAG00000009357	UPF2	100	93.041	ENSIPUG00000015524	UPF2	100	93.041	Ictalurus_punctatus
ENSPNAG00000009357	UPF2	100	83.841	ENSSTOG00000013075	UPF2	100	83.685	Ictidomys_tridecemlineatus
ENSPNAG00000009357	UPF2	100	82.904	ENSJJAG00000004913	Upf2	100	82.982	Jaculus_jaculus
ENSPNAG00000009357	UPF2	99	88.531	ENSKMAG00000001071	UPF2	100	88.610	Kryptolebias_marmoratus
ENSPNAG00000009357	UPF2	100	88.707	ENSLBEG00000016394	-	99	88.707	Labrus_bergylta
ENSPNAG00000009357	UPF2	80	86.452	ENSLBEG00000000728	-	94	86.479	Labrus_bergylta
ENSPNAG00000009357	UPF2	99	77.734	ENSLACG00000015945	UPF2	100	78.203	Latimeria_chalumnae
ENSPNAG00000009357	UPF2	99	87.638	ENSLOCG00000015698	UPF2	100	88.031	Lepisosteus_oculatus
ENSPNAG00000009357	UPF2	100	83.164	ENSMFAG00000043865	UPF2	100	82.697	Macaca_fascicularis
ENSPNAG00000009357	UPF2	100	83.164	ENSMMUG00000008241	UPF2	100	82.697	Macaca_mulatta
ENSPNAG00000009357	UPF2	80	83.333	ENSMNEG00000008062	UPF2	99	83.333	Macaca_nemestrina
ENSPNAG00000009357	UPF2	99	80.217	ENSMLEG00000036120	UPF2	100	80.938	Mandrillus_leucophaeus
ENSPNAG00000009357	UPF2	100	89.408	ENSMAMG00000018276	UPF2	100	89.019	Mastacembelus_armatus
ENSPNAG00000009357	UPF2	100	89.712	ENSMZEG00005021595	UPF2	100	89.478	Maylandia_zebra
ENSPNAG00000009357	UPF2	99	82.632	ENSMGAG00000004573	UPF2	99	83.178	Meleagris_gallopavo
ENSPNAG00000009357	UPF2	100	82.123	ENSMAUG00000016512	Upf2	100	81.889	Mesocricetus_auratus
ENSPNAG00000009357	UPF2	95	87.310	ENSMICG00000001716	UPF2	99	87.755	Microcebus_murinus
ENSPNAG00000009357	UPF2	100	82.592	ENSMOCG00000008263	Upf2	100	83.841	Microtus_ochrogaster
ENSPNAG00000009357	UPF2	100	85.208	ENSMMOG00000006528	UPF2	100	84.815	Mola_mola
ENSPNAG00000009357	UPF2	100	83.151	ENSMODG00000016794	UPF2	100	83.307	Monodelphis_domestica
ENSPNAG00000009357	UPF2	100	87.814	ENSMALG00000002663	UPF2	100	87.736	Monopterus_albus
ENSPNAG00000009357	UPF2	100	83.997	MGP_CAROLIEiJ_G0023157	Upf2	99	86.000	Mus_caroli
ENSPNAG00000009357	UPF2	100	84.231	ENSMUSG00000043241	Upf2	100	83.997	Mus_musculus
ENSPNAG00000009357	UPF2	100	84.231	MGP_PahariEiJ_G0019217	Upf2	100	83.997	Mus_pahari
ENSPNAG00000009357	UPF2	100	84.465	MGP_SPRETEiJ_G0024075	Upf2	100	84.231	Mus_spretus
ENSPNAG00000009357	UPF2	100	84.009	ENSMPUG00000001064	UPF2	100	83.463	Mustela_putorius_furo
ENSPNAG00000009357	UPF2	99	83.229	ENSMLUG00000000228	UPF2	100	82.788	Myotis_lucifugus
ENSPNAG00000009357	UPF2	100	89.790	ENSNBRG00000013629	UPF2	100	89.556	Neolamprologus_brichardi
ENSPNAG00000009357	UPF2	100	83.087	ENSNLEG00000012058	UPF2	100	82.619	Nomascus_leucogenys
ENSPNAG00000009357	UPF2	73	92.254	ENSOPRG00000006801	-	73	92.254	Ochotona_princeps
ENSPNAG00000009357	UPF2	100	82.293	ENSODEG00000001290	UPF2	100	82.761	Octodon_degus
ENSPNAG00000009357	UPF2	100	89.556	ENSONIG00000017991	UPF2	100	89.322	Oreochromis_niloticus
ENSPNAG00000009357	UPF2	99	82.051	ENSOCUG00000006230	UPF2	100	82.362	Oryctolagus_cuniculus
ENSPNAG00000009357	UPF2	100	88.378	ENSORLG00000017189	UPF2	100	88.534	Oryzias_latipes
ENSPNAG00000009357	UPF2	100	88.456	ENSORLG00020005969	UPF2	100	88.612	Oryzias_latipes_hni
ENSPNAG00000009357	UPF2	100	88.534	ENSORLG00015005713	UPF2	100	88.690	Oryzias_latipes_hsok
ENSPNAG00000009357	UPF2	99	85.703	ENSOMEG00000023420	UPF2	98	85.614	Oryzias_melastigma
ENSPNAG00000009357	UPF2	100	83.463	ENSOGAG00000005796	UPF2	100	82.917	Otolemur_garnettii
ENSPNAG00000009357	UPF2	100	83.801	ENSOARG00000014587	UPF2	100	83.255	Ovis_aries
ENSPNAG00000009357	UPF2	99	79.907	ENSPPAG00000037953	UPF2	100	80.625	Pan_paniscus
ENSPNAG00000009357	UPF2	100	84.009	ENSPPRG00000000690	UPF2	100	83.463	Panthera_pardus
ENSPNAG00000009357	UPF2	100	84.009	ENSPTIG00000008867	UPF2	100	83.463	Panthera_tigris_altaica
ENSPNAG00000009357	UPF2	100	83.242	ENSPTRG00000002291	UPF2	100	82.775	Pan_troglodytes
ENSPNAG00000009357	UPF2	100	83.164	ENSPANG00000023399	UPF2	100	82.697	Papio_anubis
ENSPNAG00000009357	UPF2	100	87.910	ENSPKIG00000025502	UPF2	100	88.456	Paramormyrops_kingsleyae
ENSPNAG00000009357	UPF2	60	83.136	ENSPSIG00000015158	UPF2	95	83.136	Pelodiscus_sinensis
ENSPNAG00000009357	UPF2	100	84.815	ENSPMGG00000005259	UPF2	100	86.005	Periophthalmus_magnuspinnatus
ENSPNAG00000009357	UPF2	93	77.522	ENSPEMG00000015731	Upf2	99	77.522	Peromyscus_maniculatus_bairdii
ENSPNAG00000009357	UPF2	100	83.229	ENSPCIG00000006656	UPF2	100	83.307	Phascolarctos_cinereus
ENSPNAG00000009357	UPF2	100	88.915	ENSPFOG00000017118	UPF2	100	89.071	Poecilia_formosa
ENSPNAG00000009357	UPF2	100	88.915	ENSPLAG00000005094	UPF2	100	89.071	Poecilia_latipinna
ENSPNAG00000009357	UPF2	100	88.837	ENSPMEG00000017009	UPF2	100	88.993	Poecilia_mexicana
ENSPNAG00000009357	UPF2	100	86.861	ENSPREG00000021880	UPF2	100	87.959	Poecilia_reticulata
ENSPNAG00000009357	UPF2	66	85.765	ENSPPYG00000002089	-	100	84.935	Pongo_abelii
ENSPNAG00000009357	UPF2	100	71.295	ENSPCAG00000000684	UPF2	100	70.749	Procavia_capensis
ENSPNAG00000009357	UPF2	100	79.780	ENSPCOG00000021656	UPF2	100	81.392	Propithecus_coquereli
ENSPNAG00000009357	UPF2	100	77.007	ENSPVAG00000017286	UPF2	100	76.617	Pteropus_vampyrus
ENSPNAG00000009357	UPF2	99	87.276	ENSPNYG00000017096	UPF2	100	87.354	Pundamilia_nyererei
ENSPNAG00000009357	UPF2	99	79.969	ENSRNOG00000023593	Upf2	100	95.556	Rattus_norvegicus
ENSPNAG00000009357	UPF2	99	82.330	ENSRBIG00000037780	UPF2	100	82.174	Rhinopithecus_bieti
ENSPNAG00000009357	UPF2	100	83.229	ENSRROG00000043547	UPF2	100	83.073	Rhinopithecus_roxellana
ENSPNAG00000009357	UPF2	100	82.904	ENSSBOG00000020012	UPF2	100	82.748	Saimiri_boliviensis_boliviensis
ENSPNAG00000009357	UPF2	100	87.598	ENSSFOG00015023788	upf2	100	88.066	Scleropages_formosus
ENSPNAG00000009357	UPF2	90	89.428	ENSSMAG00000007637	UPF2	100	87.345	Scophthalmus_maximus
ENSPNAG00000009357	UPF2	100	89.617	ENSSDUG00000017244	UPF2	99	89.617	Seriola_dumerili
ENSPNAG00000009357	UPF2	100	86.063	ENSSLDG00000016866	UPF2	100	86.463	Seriola_lalandi_dorsalis
ENSPNAG00000009357	UPF2	100	82.761	ENSSARG00000008615	UPF2	100	82.215	Sorex_araneus
ENSPNAG00000009357	UPF2	99	81.889	ENSSPUG00000014544	UPF2	99	81.421	Sphenodon_punctatus
ENSPNAG00000009357	UPF2	68	85.584	ENSSSCG00000011117	-	99	84.783	Sus_scrofa
ENSPNAG00000009357	UPF2	99	83.972	ENSTGUG00000002163	-	100	83.659	Taeniopygia_guttata
ENSPNAG00000009357	UPF2	100	86.516	ENSTRUG00000007519	UPF2	99	87.285	Takifugu_rubripes
ENSPNAG00000009357	UPF2	93	76.218	ENSTBEG00000012679	UPF2	93	75.966	Tupaia_belangeri
ENSPNAG00000009357	UPF2	100	82.449	ENSTTRG00000016388	UPF2	100	83.151	Tursiops_truncatus
ENSPNAG00000009357	UPF2	87	95.506	ENSUAMG00000023560	UPF2	98	95.506	Ursus_americanus
ENSPNAG00000009357	UPF2	100	83.931	ENSUMAG00000012953	UPF2	95	83.385	Ursus_maritimus
ENSPNAG00000009357	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPNAG00000009357	UPF2	100	84.087	ENSVVUG00000006166	UPF2	100	83.541	Vulpes_vulpes
ENSPNAG00000009357	UPF2	100	78.804	ENSXETG00000033103	UPF2	91	84.065	Xenopus_tropicalis
ENSPNAG00000009357	UPF2	99	88.507	ENSXCOG00000011604	UPF2	100	88.663	Xiphophorus_couchianus
ENSPNAG00000009357	UPF2	100	88.681	ENSXMAG00000017209	UPF2	100	88.837	Xiphophorus_maculatus