EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000009961 (Gene tree)
Gene ID: 108438105
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA-binding protein 42-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 9205 bases
Position: chrKV575544.1:1072839-1082043
Accession: 108438105
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000003502	RRM_1	PF00076.22	8.9e-18	1	1
ENSPNAP00000025083	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000008562	-	2212	XM_017715680	ENSPNAP00000025083	414 (aa)	XP_017571169	UPI0008149D40
ENSPNAT00000008606	-	1140	-	ENSPNAP00000003502	379 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000009961's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000009961's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000009961	rbm42	100	73.113	ENSAPOG00000015109	rbm42	100	74.463	Acanthochromis_polyacanthus
ENSPNAG00000009961	rbm42	100	69.212	ENSACIG00000010771	rbm42	100	68.735	Amphilophus_citrinellus
ENSPNAG00000009961	rbm42	100	73.508	ENSAOCG00000008873	rbm42	100	75.297	Amphiprion_ocellaris
ENSPNAG00000009961	rbm42	100	73.508	ENSAPEG00000012051	rbm42	99	75.297	Amphiprion_percula
ENSPNAG00000009961	rbm42	100	72.143	ENSATEG00000000536	rbm42	100	72.619	Anabas_testudineus
ENSPNAG00000009961	rbm42	100	73.445	ENSACLG00000004988	rbm42	100	72.619	Astatotilapia_calliptera
ENSPNAG00000009961	rbm42	100	90.097	ENSAMXG00000016545	rbm42	100	90.097	Astyanax_mexicanus
ENSPNAG00000009961	rbm42	97	69.324	ENSCSEG00000010248	rbm42	100	70.531	Cynoglossus_semilaevis
ENSPNAG00000009961	rbm42	100	68.957	ENSCVAG00000015589	rbm42	100	69.668	Cyprinodon_variegatus
ENSPNAG00000009961	rbm42	100	80.241	ENSDARG00000039910	rbm42	100	81.687	Danio_rerio
ENSPNAG00000009961	rbm42	100	80.896	ENSELUG00000022403	rbm42	100	79.953	Esox_lucius
ENSPNAG00000009961	rbm42	53	80.269	ENSFHEG00000006764	rbm42	80	77.406	Fundulus_heteroclitus
ENSPNAG00000009961	rbm42	100	68.571	ENSGMOG00000012660	rbm42	100	70.686	Gadus_morhua
ENSPNAG00000009961	rbm42	76	70.625	ENSGAFG00000009059	rbm42	100	66.967	Gambusia_affinis
ENSPNAG00000009961	rbm42	100	69.617	ENSGACG00000004170	rbm42	100	70.096	Gasterosteus_aculeatus
ENSPNAG00000009961	rbm42	100	73.445	ENSHBUG00000011141	rbm42	100	72.619	Haplochromis_burtoni
ENSPNAG00000009961	rbm42	100	70.546	ENSHCOG00000021214	rbm42	100	69.286	Hippocampus_comes
ENSPNAG00000009961	rbm42	100	87.923	ENSIPUG00000022365	rbm42	99	87.923	Ictalurus_punctatus
ENSPNAG00000009961	rbm42	91	67.792	ENSKMAG00000015287	rbm42	99	62.750	Kryptolebias_marmoratus
ENSPNAG00000009961	rbm42	85	69.663	ENSLBEG00000004578	-	96	71.429	Labrus_bergylta
ENSPNAG00000009961	rbm42	100	71.667	ENSLBEG00000017547	rbm42	100	73.159	Labrus_bergylta
ENSPNAG00000009961	rbm42	100	76.247	ENSLOCG00000003368	rbm42	100	77.197	Lepisosteus_oculatus
ENSPNAG00000009961	rbm42	100	71.631	ENSMAMG00000006708	rbm42	100	73.050	Mastacembelus_armatus
ENSPNAG00000009961	rbm42	100	73.445	ENSMZEG00005025234	rbm42	100	72.619	Maylandia_zebra
ENSPNAG00000009961	rbm42	100	61.972	ENSMALG00000015720	rbm42	100	71.503	Monopterus_albus
ENSPNAG00000009961	rbm42	100	73.159	ENSONIG00000008029	rbm42	100	73.286	Oreochromis_niloticus
ENSPNAG00000009961	rbm42	100	62.438	ENSORLG00020022507	rbm42	100	62.438	Oryzias_latipes_hni
ENSPNAG00000009961	rbm42	100	70.406	ENSORLG00015000659	rbm42	100	68.046	Oryzias_latipes_hsok
ENSPNAG00000009961	rbm42	55	81.034	ENSOMEG00000014332	rbm42	96	76.953	Oryzias_melastigma
ENSPNAG00000009961	rbm42	100	81.775	ENSPKIG00000015165	rbm42	100	81.775	Paramormyrops_kingsleyae
ENSPNAG00000009961	rbm42	95	44.872	ENSPSIG00000013935	-	68	84.426	Pelodiscus_sinensis
ENSPNAG00000009961	rbm42	100	56.992	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSPNAG00000009961	rbm42	51	61.722	ENSPMAG00000008633	rbm42	100	51.143	Petromyzon_marinus
ENSPNAG00000009961	rbm42	100	69.286	ENSPFOG00000007701	rbm42	100	67.126	Poecilia_formosa
ENSPNAG00000009961	rbm42	100	69.286	ENSPLAG00000009405	rbm42	100	67.126	Poecilia_latipinna
ENSPNAG00000009961	rbm42	100	69.048	ENSPMEG00000010375	rbm42	100	66.897	Poecilia_mexicana
ENSPNAG00000009961	rbm42	100	69.524	ENSPREG00000018102	rbm42	100	67.356	Poecilia_reticulata
ENSPNAG00000009961	rbm42	100	73.206	ENSPNYG00000014460	rbm42	100	72.381	Pundamilia_nyererei
ENSPNAG00000009961	rbm42	100	80.806	ENSSFOG00015019227	rbm42	100	80.806	Scleropages_formosus
ENSPNAG00000009961	rbm42	100	73.585	ENSSMAG00000011935	rbm42	100	71.698	Scophthalmus_maximus
ENSPNAG00000009961	rbm42	100	74.528	ENSSDUG00000004033	rbm42	100	75.943	Seriola_dumerili
ENSPNAG00000009961	rbm42	100	66.667	ENSSLDG00000009918	rbm42	100	85.393	Seriola_lalandi_dorsalis
ENSPNAG00000009961	rbm42	100	72.406	ENSSPAG00000019871	rbm42	100	74.822	Stegastes_partitus
ENSPNAG00000009961	rbm42	100	66.901	ENSTRUG00000024586	-	76	64.634	Takifugu_rubripes
ENSPNAG00000009961	rbm42	99	58.315	ENSTNIG00000011669	rbm42	100	60.181	Tetraodon_nigroviridis
ENSPNAG00000009961	rbm42	100	56.563	ENSXETG00000017599	rbm42	100	57.757	Xenopus_tropicalis
ENSPNAG00000009961	rbm42	100	69.668	ENSXMAG00000012827	rbm42	100	67.586	Xiphophorus_maculatus