EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000010865 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 41061 bases
Position: chrKV575405.1:1508896-1549956
Accession: 108432498
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000025647	ResIII	PF04851.15	3.7e-12	1	1
ENSPNAP00000025647	DEAD	PF00270.29	8.7e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000007172	-	3542	XM_017706350	ENSPNAP00000004341	1064 (aa)	XP_017561839	-
ENSPNAT00000007118	-	2931	-	ENSPNAP00000025647	977 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000010865's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000010865's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000010865	hfm1	72	34.119	ENSPNAG00000016413	ascc3	69	34.119
ENSPNAG00000010865	hfm1	79	30.454	ENSPNAG00000010998	snrnp200	66	30.454

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000010865	hfm1	84	67.494	ENSG00000162669	HFM1	59	67.494	Homo_sapiens
ENSPNAG00000010865	hfm1	88	77.460	ENSAPOG00000005304	hfm1	99	77.460	Acanthochromis_polyacanthus
ENSPNAG00000010865	hfm1	84	67.967	ENSAMEG00000000432	HFM1	59	67.967	Ailuropoda_melanoleuca
ENSPNAG00000010865	hfm1	80	74.261	ENSACIG00000021553	hfm1	75	74.261	Amphilophus_citrinellus
ENSPNAG00000010865	hfm1	88	78.750	ENSAOCG00000022839	hfm1	99	78.750	Amphiprion_ocellaris
ENSPNAG00000010865	hfm1	88	78.277	ENSAPEG00000014316	hfm1	99	78.277	Amphiprion_percula
ENSPNAG00000010865	hfm1	85	74.122	ENSATEG00000019181	hfm1	69	74.122	Anabas_testudineus
ENSPNAG00000010865	hfm1	84	67.176	ENSAPLG00000013639	HFM1	59	67.176	Anas_platyrhynchos
ENSPNAG00000010865	hfm1	83	66.865	ENSANAG00000029513	HFM1	60	66.865	Aotus_nancymaae
ENSPNAG00000010865	hfm1	84	74.817	ENSACLG00000009033	hfm1	98	74.817	Astatotilapia_calliptera
ENSPNAG00000010865	hfm1	100	76.111	ENSAMXG00000006108	hfm1	75	75.741	Astyanax_mexicanus
ENSPNAG00000010865	hfm1	84	68.085	ENSBTAG00000020856	HFM1	59	68.085	Bos_taurus
ENSPNAG00000010865	hfm1	84	67.258	ENSCJAG00000001843	HFM1	59	67.258	Callithrix_jacchus
ENSPNAG00000010865	hfm1	84	67.574	ENSCAFG00000020187	HFM1	59	67.574	Canis_familiaris
ENSPNAG00000010865	hfm1	84	68.123	ENSTSYG00000014250	HFM1	59	68.123	Carlito_syrichta
ENSPNAG00000010865	hfm1	84	67.453	ENSCPOG00000007421	HFM1	60	67.453	Cavia_porcellus
ENSPNAG00000010865	hfm1	84	66.903	ENSCCAG00000033206	HFM1	59	66.903	Cebus_capucinus
ENSPNAG00000010865	hfm1	83	67.023	ENSCATG00000030987	HFM1	59	67.023	Cercocebus_atys
ENSPNAG00000010865	hfm1	84	67.904	ENSCLAG00000005173	HFM1	57	67.904	Chinchilla_lanigera
ENSPNAG00000010865	hfm1	68	52.022	ENSCSAVG00000005094	-	100	52.022	Ciona_savignyi
ENSPNAG00000010865	hfm1	80	64.640	ENSCGRG00001016995	Hfm1	58	64.640	Cricetulus_griseus_chok1gshd
ENSPNAG00000010865	hfm1	83	66.310	ENSCGRG00000017181	Hfm1	59	66.310	Cricetulus_griseus_crigri
ENSPNAG00000010865	hfm1	83	72.488	ENSCSEG00000017659	hfm1	77	72.488	Cynoglossus_semilaevis
ENSPNAG00000010865	hfm1	70	73.840	ENSCVAG00000005075	hfm1	86	73.840	Cyprinodon_variegatus
ENSPNAG00000010865	hfm1	100	69.137	ENSDARG00000104288	hfm1	98	69.325	Danio_rerio
ENSPNAG00000010865	hfm1	86	65.283	ENSDNOG00000004776	HFM1	58	65.283	Dasypus_novemcinctus
ENSPNAG00000010865	hfm1	84	65.553	ENSDORG00000014661	Hfm1	59	65.553	Dipodomys_ordii
ENSPNAG00000010865	hfm1	79	68.493	ENSEASG00005015424	HFM1	80	68.493	Equus_asinus_asinus
ENSPNAG00000010865	hfm1	84	68.155	ENSECAG00000024039	HFM1	57	68.155	Equus_caballus
ENSPNAG00000010865	hfm1	92	77.014	ENSELUG00000018944	hfm1	99	77.014	Esox_lucius
ENSPNAG00000010865	hfm1	84	67.730	ENSFCAG00000029116	HFM1	59	67.730	Felis_catus
ENSPNAG00000010865	hfm1	84	67.769	ENSFALG00000001781	HFM1	59	67.769	Ficedula_albicollis
ENSPNAG00000010865	hfm1	84	66.941	ENSFDAG00000020816	HFM1	57	66.941	Fukomys_damarensis
ENSPNAG00000010865	hfm1	83	70.539	ENSGMOG00000017436	hfm1	86	70.539	Gadus_morhua
ENSPNAG00000010865	hfm1	92	74.697	ENSGAFG00000018093	hfm1	100	74.697	Gambusia_affinis
ENSPNAG00000010865	hfm1	83	69.820	ENSGACG00000015686	hfm1	86	69.820	Gasterosteus_aculeatus
ENSPNAG00000010865	hfm1	84	67.494	ENSGGOG00000038524	HFM1	59	67.494	Gorilla_gorilla
ENSPNAG00000010865	hfm1	82	73.156	ENSHBUG00000007309	hfm1	79	73.156	Haplochromis_burtoni
ENSPNAG00000010865	hfm1	81	75.157	ENSHCOG00000019632	hfm1	98	75.157	Hippocampus_comes
ENSPNAG00000010865	hfm1	92	85.109	ENSIPUG00000017020	hfm1	100	85.109	Ictalurus_punctatus
ENSPNAG00000010865	hfm1	84	66.548	ENSJJAG00000017198	Hfm1	60	66.548	Jaculus_jaculus
ENSPNAG00000010865	hfm1	81	73.716	ENSKMAG00000002282	hfm1	84	73.716	Kryptolebias_marmoratus
ENSPNAG00000010865	hfm1	84	76.485	ENSLBEG00000006759	hfm1	98	76.485	Labrus_bergylta
ENSPNAG00000010865	hfm1	84	67.761	ENSLACG00000010698	HFM1	80	67.761	Latimeria_chalumnae
ENSPNAG00000010865	hfm1	90	70.318	ENSLOCG00000004931	hfm1	84	70.318	Lepisosteus_oculatus
ENSPNAG00000010865	hfm1	67	67.894	ENSLAFG00000015903	-	91	67.894	Loxodonta_africana
ENSPNAG00000010865	hfm1	83	65.119	ENSMFAG00000003649	HFM1	58	65.119	Macaca_fascicularis
ENSPNAG00000010865	hfm1	83	67.141	ENSMMUG00000006819	HFM1	59	67.141	Macaca_mulatta
ENSPNAG00000010865	hfm1	82	76.683	ENSMAMG00000004623	hfm1	97	76.683	Mastacembelus_armatus
ENSPNAG00000010865	hfm1	84	74.817	ENSMZEG00005004679	hfm1	98	74.817	Maylandia_zebra
ENSPNAG00000010865	hfm1	76	65.888	ENSMGAG00000008437	HFM1	96	65.888	Meleagris_gallopavo
ENSPNAG00000010865	hfm1	83	66.429	ENSMAUG00000018858	Hfm1	58	66.429	Mesocricetus_auratus
ENSPNAG00000010865	hfm1	84	67.532	ENSMICG00000037935	HFM1	59	67.532	Microcebus_murinus
ENSPNAG00000010865	hfm1	85	65.734	ENSMOCG00000014812	Hfm1	59	65.734	Microtus_ochrogaster
ENSPNAG00000010865	hfm1	91	75.300	ENSMMOG00000006148	hfm1	99	75.300	Mola_mola
ENSPNAG00000010865	hfm1	89	76.894	ENSMALG00000002401	hfm1	100	76.894	Monopterus_albus
ENSPNAG00000010865	hfm1	82	62.969	MGP_CAROLIEiJ_G0027496	Hfm1	58	62.969	Mus_caroli
ENSPNAG00000010865	hfm1	90	62.747	ENSMUSG00000043410	Hfm1	62	62.747	Mus_musculus
ENSPNAG00000010865	hfm1	85	65.771	MGP_PahariEiJ_G0017268	Hfm1	59	66.430	Mus_pahari
ENSPNAG00000010865	hfm1	85	65.661	MGP_SPRETEiJ_G0028495	Hfm1	60	65.661	Mus_spretus
ENSPNAG00000010865	hfm1	83	68.296	ENSMPUG00000004594	HFM1	56	68.296	Mustela_putorius_furo
ENSPNAG00000010865	hfm1	84	67.612	ENSMLUG00000010200	HFM1	59	67.612	Myotis_lucifugus
ENSPNAG00000010865	hfm1	82	75.188	ENSNBRG00000002910	hfm1	97	75.188	Neolamprologus_brichardi
ENSPNAG00000010865	hfm1	84	66.154	ENSNLEG00000010285	HFM1	59	66.154	Nomascus_leucogenys
ENSPNAG00000010865	hfm1	76	68.519	ENSMEUG00000015788	HFM1	53	68.519	Notamacropus_eugenii
ENSPNAG00000010865	hfm1	84	61.765	ENSOPRG00000013916	HFM1	59	61.765	Ochotona_princeps
ENSPNAG00000010865	hfm1	86	72.018	ENSONIG00000010590	hfm1	83	72.018	Oreochromis_niloticus
ENSPNAG00000010865	hfm1	81	75.000	ENSORLG00000026844	hfm1	99	75.000	Oryzias_latipes
ENSPNAG00000010865	hfm1	93	62.018	ENSORLG00020002951	hfm1	74	62.018	Oryzias_latipes_hni
ENSPNAG00000010865	hfm1	84	71.462	ENSOMEG00000016474	hfm1	63	71.462	Oryzias_melastigma
ENSPNAG00000010865	hfm1	84	67.414	ENSOGAG00000032369	HFM1	69	67.414	Otolemur_garnettii
ENSPNAG00000010865	hfm1	84	68.000	ENSOARG00000015812	HFM1	59	68.000	Ovis_aries
ENSPNAG00000010865	hfm1	84	67.730	ENSPPAG00000024582	HFM1	64	67.730	Pan_paniscus
ENSPNAG00000010865	hfm1	84	67.730	ENSPPRG00000003270	HFM1	59	67.730	Panthera_pardus
ENSPNAG00000010865	hfm1	84	67.730	ENSPTIG00000018881	HFM1	59	67.730	Panthera_tigris_altaica
ENSPNAG00000010865	hfm1	84	67.730	ENSPTRG00000000948	HFM1	59	67.730	Pan_troglodytes
ENSPNAG00000010865	hfm1	83	67.023	ENSPANG00000009838	HFM1	59	67.023	Papio_anubis
ENSPNAG00000010865	hfm1	82	76.799	ENSPKIG00000003810	hfm1	96	76.799	Paramormyrops_kingsleyae
ENSPNAG00000010865	hfm1	82	74.688	ENSPMGG00000011059	hfm1	100	74.688	Periophthalmus_magnuspinnatus
ENSPNAG00000010865	hfm1	83	66.390	ENSPEMG00000022852	Hfm1	58	66.390	Peromyscus_maniculatus_bairdii
ENSPNAG00000010865	hfm1	83	67.819	ENSPCIG00000014233	HFM1	57	67.819	Phascolarctos_cinereus
ENSPNAG00000010865	hfm1	84	73.050	ENSPFOG00000017194	hfm1	80	73.050	Poecilia_formosa
ENSPNAG00000010865	hfm1	84	73.168	ENSPLAG00000000571	hfm1	76	73.168	Poecilia_latipinna
ENSPNAG00000010865	hfm1	84	73.050	ENSPMEG00000019475	hfm1	77	73.050	Poecilia_mexicana
ENSPNAG00000010865	hfm1	90	75.810	ENSPREG00000007803	hfm1	100	75.810	Poecilia_reticulata
ENSPNAG00000010865	hfm1	84	67.494	ENSPPYG00000001163	HFM1	59	67.494	Pongo_abelii
ENSPNAG00000010865	hfm1	84	61.737	ENSPVAG00000009713	HFM1	60	61.737	Pteropus_vampyrus
ENSPNAG00000010865	hfm1	84	74.481	ENSPNYG00000001795	hfm1	98	74.481	Pundamilia_nyererei
ENSPNAG00000010865	hfm1	84	65.880	ENSRNOG00000023299	Hfm1	59	65.880	Rattus_norvegicus
ENSPNAG00000010865	hfm1	84	67.139	ENSRROG00000045569	HFM1	59	67.139	Rhinopithecus_roxellana
ENSPNAG00000010865	hfm1	84	67.494	ENSSBOG00000027456	HFM1	60	67.494	Saimiri_boliviensis_boliviensis
ENSPNAG00000010865	hfm1	59	66.612	ENSSHAG00000014616	-	69	66.612	Sarcophilus_harrisii
ENSPNAG00000010865	hfm1	95	75.858	ENSSFOG00015020129	hfm1	63	75.858	Scleropages_formosus
ENSPNAG00000010865	hfm1	87	70.530	ENSSMAG00000006907	hfm1	90	70.120	Scophthalmus_maximus
ENSPNAG00000010865	hfm1	88	76.933	ENSSDUG00000011424	hfm1	100	76.933	Seriola_dumerili
ENSPNAG00000010865	hfm1	90	77.086	ENSSLDG00000016386	hfm1	100	77.086	Seriola_lalandi_dorsalis
ENSPNAG00000010865	hfm1	88	77.903	ENSSPAG00000001023	hfm1	99	77.903	Stegastes_partitus
ENSPNAG00000010865	hfm1	84	68.508	ENSSSCG00000006912	HFM1	62	68.508	Sus_scrofa
ENSPNAG00000010865	hfm1	83	67.105	ENSTGUG00000006172	HFM1	87	67.105	Taeniopygia_guttata
ENSPNAG00000010865	hfm1	85	66.589	ENSTTRG00000013933	HFM1	61	66.589	Tursiops_truncatus
ENSPNAG00000010865	hfm1	84	65.721	ENSVPAG00000011331	HFM1	59	65.721	Vicugna_pacos
ENSPNAG00000010865	hfm1	81	67.445	ENSVVUG00000020760	HFM1	81	67.445	Vulpes_vulpes
ENSPNAG00000010865	hfm1	91	76.119	ENSXMAG00000004178	hfm1	100	76.119	Xiphophorus_maculatus