EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000011237 (Gene tree)
Gene ID: 108430084
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 14230 bases
Position: chrKV575289.1:4270191-4284420
Accession: 108430084
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000004821	RNA_pol_Rpb1_5	PF04998.17	5.3e-101	1	1
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	1	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	2	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	3	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	4	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	5	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	6	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	7	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	8	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	9	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	10	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	11	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	12	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	13	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	14	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	15	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	16	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	17	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	18	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	19	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	20	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	21	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	22	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	23	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	24	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	25	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	26	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	27	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	28	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	29	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	30	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	31	32
ENSPNAP00000004821	RNA_pol_Rpb1_R	PF05001.13	3.8e-22	32	32
ENSPNAP00000004821	RNA_pol_Rpb1_4	PF05000.17	1.4e-37	1	1
ENSPNAP00000004821	RNA_pol_Rpb1_2	PF00623.20	7e-75	1	1
ENSPNAP00000004821	RNA_pol_Rpb1_3	PF04983.18	3.2e-50	1	1
ENSPNAP00000004821	RNA_pol_Rpb1_1	PF04997.12	2.7e-108	1	1
ENSPNAP00000004821	RNA_pol_Rpb1_7	PF04990.12	1.1e-54	1	1
ENSPNAP00000004821	RNA_pol_Rpb1_6	PF04992.14	9e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000006352	-	8562	XM_017702263	ENSPNAP00000004821	1966 (aa)	XP_017557752	UPI00081482CC

Gene Model

Click here to download ENSPNAG00000011237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000011237's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000011237	polr2a	57	32.444	ENSPNAG00000019223	polr1a	79	30.875
ENSPNAG00000011237	polr2a	60	48.485	ENSPNAG00000006629	polr3a	83	51.765

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000011237	polr2a	87	97.705	ENSAPOG00000006552	polr2a	90	97.705	Acanthochromis_polyacanthus
ENSPNAG00000011237	polr2a	82	94.238	ENSAMEG00000016265	-	82	94.245	Ailuropoda_melanoleuca
ENSPNAG00000011237	polr2a	100	95.473	ENSACIG00000015982	polr2a	100	95.982	Amphilophus_citrinellus
ENSPNAG00000011237	polr2a	95	95.658	ENSAOCG00000004255	polr2a	93	95.658	Amphiprion_ocellaris
ENSPNAG00000011237	polr2a	100	98.220	ENSAPEG00000012623	polr2a	100	98.220	Amphiprion_percula
ENSPNAG00000011237	polr2a	100	97.711	ENSATEG00000019644	polr2a	100	97.711	Anabas_testudineus
ENSPNAG00000011237	polr2a	82	94.845	ENSACAG00000014561	POLR2A	82	94.851	Anolis_carolinensis
ENSPNAG00000011237	polr2a	82	94.600	ENSANAG00000020093	-	82	94.606	Aotus_nancymaae
ENSPNAG00000011237	polr2a	100	97.609	ENSACLG00000006735	polr2a	100	97.609	Astatotilapia_calliptera
ENSPNAG00000011237	polr2a	100	99.339	ENSAMXG00000020046	polr2a	100	99.339	Astyanax_mexicanus
ENSPNAG00000011237	polr2a	82	94.600	ENSBTAG00000046765	POLR2A	82	94.606	Bos_taurus
ENSPNAG00000011237	polr2a	98	71.429	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSPNAG00000011237	polr2a	86	94.538	ENSCAFG00000016532	POLR2A	99	94.544	Canis_familiaris
ENSPNAG00000011237	polr2a	82	93.672	ENSCAFG00020007929	-	82	93.680	Canis_lupus_dingo
ENSPNAG00000011237	polr2a	82	94.600	ENSCHIG00000027173	-	82	94.606	Capra_hircus
ENSPNAG00000011237	polr2a	90	94.057	ENSTSYG00000012803	-	85	92.017	Carlito_syrichta
ENSPNAG00000011237	polr2a	98	91.217	ENSCAPG00000001882	-	100	93.805	Cavia_aperea
ENSPNAG00000011237	polr2a	99	88.986	ENSCPOG00000014812	-	100	93.428	Cavia_porcellus
ENSPNAG00000011237	polr2a	82	94.600	ENSCCAG00000020938	-	82	94.606	Cebus_capucinus
ENSPNAG00000011237	polr2a	82	94.662	ENSCATG00000013680	-	82	94.668	Cercocebus_atys
ENSPNAG00000011237	polr2a	82	94.475	ENSCLAG00000012196	-	82	94.482	Chinchilla_lanigera
ENSPNAG00000011237	polr2a	82	85.811	ENSCSAG00000011644	-	82	85.829	Chlorocebus_sabaeus
ENSPNAG00000011237	polr2a	91	83.293	ENSCPBG00000012697	POLR2A	99	84.025	Chrysemys_picta_bellii
ENSPNAG00000011237	polr2a	98	76.624	ENSCING00000007884	-	99	77.180	Ciona_intestinalis
ENSPNAG00000011237	polr2a	98	73.927	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSPNAG00000011237	polr2a	82	93.979	ENSCANG00000010622	-	82	93.986	Colobus_angolensis_palliatus
ENSPNAG00000011237	polr2a	82	88.445	ENSCGRG00001003538	Polr2a	85	87.134	Cricetulus_griseus_chok1gshd
ENSPNAG00000011237	polr2a	82	91.043	ENSCGRG00000012105	Polr2a	93	91.054	Cricetulus_griseus_crigri
ENSPNAG00000011237	polr2a	99	96.947	ENSCSEG00000002635	polr2a	100	96.947	Cynoglossus_semilaevis
ENSPNAG00000011237	polr2a	100	98.118	ENSCVAG00000005156	polr2a	100	98.118	Cyprinodon_variegatus
ENSPNAG00000011237	polr2a	100	97.916	ENSDARG00000099966	polr2a	100	97.916	Danio_rerio
ENSPNAG00000011237	polr2a	82	91.744	ENSDNOG00000016482	-	82	91.754	Dasypus_novemcinctus
ENSPNAG00000011237	polr2a	82	94.600	ENSDORG00000008667	Polr2a	82	94.606	Dipodomys_ordii
ENSPNAG00000011237	polr2a	99	70.269	FBgn0003277	RpII215	98	75.419	Drosophila_melanogaster
ENSPNAG00000011237	polr2a	94	90.163	ENSETEG00000002540	-	87	91.267	Echinops_telfairi
ENSPNAG00000011237	polr2a	82	87.461	ENSEBUG00000013967	polr2a	82	87.446	Eptatretus_burgeri
ENSPNAG00000011237	polr2a	82	92.551	ENSEASG00005019114	-	83	92.560	Equus_asinus_asinus
ENSPNAG00000011237	polr2a	82	94.600	ENSECAG00000018485	POLR2A	82	94.606	Equus_caballus
ENSPNAG00000011237	polr2a	83	94.593	ENSEEUG00000001154	-	95	94.593	Erinaceus_europaeus
ENSPNAG00000011237	polr2a	89	92.787	ENSELUG00000014284	polr2a	84	93.465	Esox_lucius
ENSPNAG00000011237	polr2a	82	94.662	ENSFDAG00000008287	-	82	94.668	Fukomys_damarensis
ENSPNAG00000011237	polr2a	99	97.808	ENSFHEG00000001768	polr2a	100	97.808	Fundulus_heteroclitus
ENSPNAG00000011237	polr2a	99	93.133	ENSGMOG00000007725	polr2a	100	93.133	Gadus_morhua
ENSPNAG00000011237	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	93.119	Gambusia_affinis
ENSPNAG00000011237	polr2a	99	93.289	ENSGACG00000019366	polr2a	100	93.061	Gasterosteus_aculeatus
ENSPNAG00000011237	polr2a	82	92.632	ENSGGOG00000014800	-	96	93.401	Gorilla_gorilla
ENSPNAG00000011237	polr2a	99	97.534	ENSHBUG00000018937	polr2a	100	97.534	Haplochromis_burtoni
ENSPNAG00000011237	polr2a	82	94.662	ENSHGLG00000012381	POLR2A	82	94.668	Heterocephalus_glaber_female
ENSPNAG00000011237	polr2a	82	94.662	ENSHGLG00100014843	POLR2A	82	94.668	Heterocephalus_glaber_male
ENSPNAG00000011237	polr2a	100	97.457	ENSHCOG00000011874	polr2a	100	97.457	Hippocampus_comes
ENSPNAG00000011237	polr2a	100	98.678	ENSIPUG00000002613	Polr2a	100	98.678	Ictalurus_punctatus
ENSPNAG00000011237	polr2a	82	94.600	ENSSTOG00000001304	-	82	94.606	Ictidomys_tridecemlineatus
ENSPNAG00000011237	polr2a	82	94.724	ENSJJAG00000013049	Polr2a	82	94.730	Jaculus_jaculus
ENSPNAG00000011237	polr2a	82	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSPNAG00000011237	polr2a	99	97.710	ENSLBEG00000027652	polr2a	100	97.710	Labrus_bergylta
ENSPNAG00000011237	polr2a	80	85.389	ENSLACG00000012071	POLR2A	81	85.461	Latimeria_chalumnae
ENSPNAG00000011237	polr2a	89	97.543	ENSLOCG00000013863	polr2a	97	97.083	Lepisosteus_oculatus
ENSPNAG00000011237	polr2a	99	91.325	ENSLAFG00000008626	-	97	94.606	Loxodonta_africana
ENSPNAG00000011237	polr2a	50	93.769	ENSMFAG00000007042	-	99	93.769	Macaca_fascicularis
ENSPNAG00000011237	polr2a	82	94.662	ENSMMUG00000023620	-	91	94.668	Macaca_mulatta
ENSPNAG00000011237	polr2a	82	94.227	ENSMNEG00000040407	-	82	94.234	Macaca_nemestrina
ENSPNAG00000011237	polr2a	80	90.380	ENSMLEG00000030263	-	99	93.769	Mandrillus_leucophaeus
ENSPNAG00000011237	polr2a	100	97.711	ENSMAMG00000003351	polr2a	100	97.711	Mastacembelus_armatus
ENSPNAG00000011237	polr2a	100	97.609	ENSMZEG00005021429	polr2a	100	97.609	Maylandia_zebra
ENSPNAG00000011237	polr2a	50	94.801	ENSMAUG00000021055	-	99	94.801	Mesocricetus_auratus
ENSPNAG00000011237	polr2a	82	94.600	ENSMICG00000013372	-	98	94.166	Microcebus_murinus
ENSPNAG00000011237	polr2a	99	90.087	ENSMOCG00000018279	Polr2a	99	90.173	Microtus_ochrogaster
ENSPNAG00000011237	polr2a	90	96.898	ENSMMOG00000012515	polr2a	92	96.898	Mola_mola
ENSPNAG00000011237	polr2a	82	94.351	ENSMODG00000007009	-	82	94.358	Monodelphis_domestica
ENSPNAG00000011237	polr2a	94	94.424	ENSMALG00000008716	polr2a	99	95.037	Monopterus_albus
ENSPNAG00000011237	polr2a	82	94.600	MGP_CAROLIEiJ_G0016587	Polr2a	82	94.606	Mus_caroli
ENSPNAG00000011237	polr2a	82	94.600	ENSMUSG00000005198	Polr2a	82	94.606	Mus_musculus
ENSPNAG00000011237	polr2a	82	92.460	MGP_PahariEiJ_G0017718	Polr2a	82	92.469	Mus_pahari
ENSPNAG00000011237	polr2a	82	94.600	MGP_SPRETEiJ_G0017423	Polr2a	82	94.606	Mus_spretus
ENSPNAG00000011237	polr2a	82	94.475	ENSMPUG00000009648	-	82	94.482	Mustela_putorius_furo
ENSPNAG00000011237	polr2a	82	93.986	ENSMLUG00000009088	-	82	93.994	Myotis_lucifugus
ENSPNAG00000011237	polr2a	82	94.600	ENSNGAG00000002543	Polr2a	82	94.606	Nannospalax_galili
ENSPNAG00000011237	polr2a	100	95.473	ENSNBRG00000002005	polr2a	100	96.033	Neolamprologus_brichardi
ENSPNAG00000011237	polr2a	82	93.251	ENSNLEG00000009460	-	82	93.259	Nomascus_leucogenys
ENSPNAG00000011237	polr2a	94	95.643	ENSMEUG00000008611	-	96	86.906	Notamacropus_eugenii
ENSPNAG00000011237	polr2a	80	94.315	ENSOPRG00000015116	-	99	94.315	Ochotona_princeps
ENSPNAG00000011237	polr2a	89	93.180	ENSODEG00000017674	-	85	90.043	Octodon_degus
ENSPNAG00000011237	polr2a	100	97.864	ENSONIG00000009231	polr2a	100	97.864	Oreochromis_niloticus
ENSPNAG00000011237	polr2a	99	90.517	ENSOCUG00000017929	-	100	94.482	Oryctolagus_cuniculus
ENSPNAG00000011237	polr2a	100	98.016	ENSORLG00000006431	polr2a	100	98.016	Oryzias_latipes
ENSPNAG00000011237	polr2a	100	98.016	ENSORLG00020010235	polr2a	100	98.016	Oryzias_latipes_hni
ENSPNAG00000011237	polr2a	100	97.915	ENSORLG00015007075	polr2a	100	97.915	Oryzias_latipes_hsok
ENSPNAG00000011237	polr2a	92	97.386	ENSOMEG00000010713	polr2a	100	97.386	Oryzias_melastigma
ENSPNAG00000011237	polr2a	82	94.600	ENSOGAG00000033608	-	82	94.606	Otolemur_garnettii
ENSPNAG00000011237	polr2a	89	94.600	ENSOARG00000013874	-	85	94.606	Ovis_aries
ENSPNAG00000011237	polr2a	81	92.067	ENSPPAG00000043734	-	82	92.002	Pan_paniscus
ENSPNAG00000011237	polr2a	82	93.251	ENSPTRG00000008691	POLR2A	82	93.259	Pan_troglodytes
ENSPNAG00000011237	polr2a	82	93.979	ENSPANG00000024099	-	82	93.986	Papio_anubis
ENSPNAG00000011237	polr2a	81	96.118	ENSPKIG00000005727	polr2a	85	96.118	Paramormyrops_kingsleyae
ENSPNAG00000011237	polr2a	98	92.892	ENSPSIG00000014006	POLR2A	100	92.813	Pelodiscus_sinensis
ENSPNAG00000011237	polr2a	100	96.957	ENSPMGG00000019734	polr2a	100	96.957	Periophthalmus_magnuspinnatus
ENSPNAG00000011237	polr2a	82	94.600	ENSPEMG00000012521	Polr2a	82	94.606	Peromyscus_maniculatus_bairdii
ENSPNAG00000011237	polr2a	86	94.355	ENSPCIG00000028851	-	82	94.355	Phascolarctos_cinereus
ENSPNAG00000011237	polr2a	99	97.889	ENSPFOG00000007890	polr2a	99	97.889	Poecilia_formosa
ENSPNAG00000011237	polr2a	99	97.889	ENSPLAG00000007399	polr2a	99	97.889	Poecilia_latipinna
ENSPNAG00000011237	polr2a	99	97.889	ENSPMEG00000002071	polr2a	99	97.889	Poecilia_mexicana
ENSPNAG00000011237	polr2a	100	98.016	ENSPREG00000013122	polr2a	100	98.016	Poecilia_reticulata
ENSPNAG00000011237	polr2a	82	94.600	ENSPPYG00000007924	-	82	94.606	Pongo_abelii
ENSPNAG00000011237	polr2a	74	95.526	ENSPCAG00000006951	-	74	95.526	Procavia_capensis
ENSPNAG00000011237	polr2a	82	93.358	ENSPCOG00000025260	-	82	93.366	Propithecus_coquereli
ENSPNAG00000011237	polr2a	82	94.289	ENSPVAG00000005069	-	82	94.296	Pteropus_vampyrus
ENSPNAG00000011237	polr2a	100	97.660	ENSPNYG00000022340	polr2a	100	97.660	Pundamilia_nyererei
ENSPNAG00000011237	polr2a	82	94.538	ENSRNOG00000028834	Polr2a	82	94.544	Rattus_norvegicus
ENSPNAG00000011237	polr2a	82	94.413	ENSRBIG00000002471	-	91	94.420	Rhinopithecus_bieti
ENSPNAG00000011237	polr2a	82	94.662	ENSRROG00000029583	-	89	93.924	Rhinopithecus_roxellana
ENSPNAG00000011237	polr2a	82	49.574	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSPNAG00000011237	polr2a	82	94.600	ENSSBOG00000000808	-	82	94.606	Saimiri_boliviensis_boliviensis
ENSPNAG00000011237	polr2a	93	94.351	ENSSHAG00000002858	-	84	94.358	Sarcophilus_harrisii
ENSPNAG00000011237	polr2a	99	97.815	ENSSFOG00015023275	polr2a	100	97.815	Scleropages_formosus
ENSPNAG00000011237	polr2a	82	96.836	ENSSMAG00000009137	polr2a	82	96.836	Scophthalmus_maximus
ENSPNAG00000011237	polr2a	100	98.067	ENSSDUG00000020466	polr2a	100	98.067	Seriola_dumerili
ENSPNAG00000011237	polr2a	100	98.067	ENSSLDG00000020613	polr2a	100	98.067	Seriola_lalandi_dorsalis
ENSPNAG00000011237	polr2a	95	90.132	ENSSARG00000005875	-	99	90.954	Sorex_araneus
ENSPNAG00000011237	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSPNAG00000011237	polr2a	82	93.669	ENSSSCG00000028278	-	82	93.676	Sus_scrofa
ENSPNAG00000011237	polr2a	98	92.188	ENSTRUG00000012320	polr2a	81	92.188	Takifugu_rubripes
ENSPNAG00000011237	polr2a	95	96.340	ENSTNIG00000010136	polr2a	100	96.340	Tetraodon_nigroviridis
ENSPNAG00000011237	polr2a	74	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSPNAG00000011237	polr2a	82	92.924	ENSTTRG00000014273	-	82	92.932	Tursiops_truncatus
ENSPNAG00000011237	polr2a	92	94.180	ENSUAMG00000014866	-	100	91.837	Ursus_americanus
ENSPNAG00000011237	polr2a	74	91.991	ENSUMAG00000015732	-	83	91.061	Ursus_maritimus
ENSPNAG00000011237	polr2a	65	98.370	ENSVPAG00000008842	-	76	98.370	Vicugna_pacos
ENSPNAG00000011237	polr2a	82	94.538	ENSVVUG00000027878	-	83	94.544	Vulpes_vulpes
ENSPNAG00000011237	polr2a	81	94.084	ENSXETG00000012465	polr2a	82	94.092	Xenopus_tropicalis
ENSPNAG00000011237	polr2a	89	95.946	ENSXCOG00000001804	polr2a	95	95.223	Xiphophorus_couchianus
ENSPNAG00000011237	polr2a	100	97.915	ENSXMAG00000015687	polr2a	100	97.915	Xiphophorus_maculatus