EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000011736 (Gene tree)
Gene ID: 108428119
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 12423 bases
Position: chrKV575344.1:467888-480310
Accession: 108428119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000005529	HVSL	PF09749.9	6.2e-63	1	1
ENSPNAP00000026428	HVSL	PF09749.9	6.2e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000005121	-	4062	-	ENSPNAP00000026428	294 (aa)	-	-
ENSPNAT00000005140	-	4062	XM_017698838	ENSPNAP00000005529	294 (aa)	XP_017554327	-

Gene Model

Click here to download ENSPNAG00000011736's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000011736's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000011736	usb1	76	51.339	ENSG00000103005	USB1	100	50.935	Homo_sapiens
ENSPNAG00000011736	usb1	100	56.803	ENSAPOG00000011942	usb1	80	66.518	Acanthochromis_polyacanthus
ENSPNAG00000011736	usb1	81	50.628	ENSAMEG00000017205	USB1	89	50.628	Ailuropoda_melanoleuca
ENSPNAG00000011736	usb1	81	62.869	ENSACIG00000012234	usb1	86	62.869	Amphilophus_citrinellus
ENSPNAG00000011736	usb1	100	56.757	ENSAOCG00000014831	usb1	90	59.848	Amphiprion_ocellaris
ENSPNAG00000011736	usb1	100	57.095	ENSAPEG00000000296	usb1	90	60.227	Amphiprion_percula
ENSPNAG00000011736	usb1	77	64.444	ENSATEG00000009348	usb1	80	64.444	Anabas_testudineus
ENSPNAG00000011736	usb1	76	55.752	ENSAPLG00000002756	USB1	100	56.195	Anas_platyrhynchos
ENSPNAG00000011736	usb1	77	53.304	ENSACAG00000015481	USB1	99	53.070	Anolis_carolinensis
ENSPNAG00000011736	usb1	76	51.339	ENSANAG00000035640	USB1	98	46.743	Aotus_nancymaae
ENSPNAG00000011736	usb1	87	57.031	ENSACLG00000020586	usb1	88	57.031	Astatotilapia_calliptera
ENSPNAG00000011736	usb1	99	77.133	ENSAMXG00000040146	usb1	95	77.133	Astyanax_mexicanus
ENSPNAG00000011736	usb1	88	48.092	ENSBTAG00000015758	USB1	98	48.092	Bos_taurus
ENSPNAG00000011736	usb1	81	50.209	ENSCJAG00000011733	USB1	98	47.893	Callithrix_jacchus
ENSPNAG00000011736	usb1	76	52.018	ENSCAFG00000008556	USB1	60	52.018	Canis_familiaris
ENSPNAG00000011736	usb1	76	52.018	ENSCAFG00020009263	USB1	84	52.018	Canis_lupus_dingo
ENSPNAG00000011736	usb1	89	48.106	ENSCHIG00000024290	USB1	99	48.106	Capra_hircus
ENSPNAG00000011736	usb1	76	50.000	ENSTSYG00000006997	USB1	85	50.000	Carlito_syrichta
ENSPNAG00000011736	usb1	76	42.857	ENSCAPG00000009057	USB1	96	42.857	Cavia_aperea
ENSPNAG00000011736	usb1	99	44.369	ENSCPOG00000014325	USB1	83	50.893	Cavia_porcellus
ENSPNAG00000011736	usb1	76	51.786	ENSCCAG00000022132	USB1	98	47.126	Cebus_capucinus
ENSPNAG00000011736	usb1	81	50.628	ENSCATG00000032174	USB1	98	47.893	Cercocebus_atys
ENSPNAG00000011736	usb1	58	47.368	ENSCLAG00000007363	USB1	100	46.591	Chinchilla_lanigera
ENSPNAG00000011736	usb1	76	52.232	ENSCSAG00000004783	USB1	98	47.510	Chlorocebus_sabaeus
ENSPNAG00000011736	usb1	79	55.172	ENSCPBG00000026943	USB1	90	52.988	Chrysemys_picta_bellii
ENSPNAG00000011736	usb1	76	31.878	ENSCING00000011490	-	98	30.303	Ciona_intestinalis
ENSPNAG00000011736	usb1	75	30.435	ENSCSAVG00000000894	-	82	30.435	Ciona_savignyi
ENSPNAG00000011736	usb1	76	51.786	ENSCANG00000037135	USB1	85	51.786	Colobus_angolensis_palliatus
ENSPNAG00000011736	usb1	99	45.051	ENSCGRG00001011243	USB1	84	51.339	Cricetulus_griseus_chok1gshd
ENSPNAG00000011736	usb1	99	45.051	ENSCGRG00000013252	USB1	84	51.339	Cricetulus_griseus_crigri
ENSPNAG00000011736	usb1	100	53.378	ENSCSEG00000013881	usb1	81	62.054	Cynoglossus_semilaevis
ENSPNAG00000011736	usb1	76	61.842	ENSCVAG00000009252	usb1	97	62.281	Cyprinodon_variegatus
ENSPNAG00000011736	usb1	85	64.143	ENSDARG00000003841	usb1	94	62.738	Danio_rerio
ENSPNAG00000011736	usb1	81	50.628	ENSDORG00000001888	Usb1	98	48.276	Dipodomys_ordii
ENSPNAG00000011736	usb1	77	40.260	FBgn0037713	CG16790	87	40.260	Drosophila_melanogaster
ENSPNAG00000011736	usb1	99	39.249	ENSETEG00000019682	USB1	90	42.259	Echinops_telfairi
ENSPNAG00000011736	usb1	76	46.667	ENSEBUG00000005889	usb1	78	46.667	Eptatretus_burgeri
ENSPNAG00000011736	usb1	99	45.392	ENSEASG00005005484	USB1	85	52.679	Equus_asinus_asinus
ENSPNAG00000011736	usb1	99	45.548	ENSECAG00000019493	USB1	77	52.915	Equus_caballus
ENSPNAG00000011736	usb1	58	45.029	ENSEEUG00000000154	USB1	66	44.318	Erinaceus_europaeus
ENSPNAG00000011736	usb1	82	58.436	ENSELUG00000010974	usb1	89	58.436	Esox_lucius
ENSPNAG00000011736	usb1	76	51.339	ENSFCAG00000002693	USB1	84	51.339	Felis_catus
ENSPNAG00000011736	usb1	99	47.782	ENSFALG00000006876	USB1	98	48.805	Ficedula_albicollis
ENSPNAG00000011736	usb1	99	44.558	ENSFDAG00000010052	USB1	84	50.893	Fukomys_damarensis
ENSPNAG00000011736	usb1	89	53.585	ENSFHEG00000012334	usb1	89	58.744	Fundulus_heteroclitus
ENSPNAG00000011736	usb1	76	64.126	ENSGMOG00000004228	usb1	99	64.126	Gadus_morhua
ENSPNAG00000011736	usb1	76	54.018	ENSGALG00000035604	USB1	98	50.602	Gallus_gallus
ENSPNAG00000011736	usb1	100	54.882	ENSGAFG00000021890	usb1	92	58.984	Gambusia_affinis
ENSPNAG00000011736	usb1	76	62.500	ENSGACG00000003257	usb1	81	62.500	Gasterosteus_aculeatus
ENSPNAG00000011736	usb1	99	49.147	ENSGAGG00000022572	USB1	95	53.077	Gopherus_agassizii
ENSPNAG00000011736	usb1	76	51.786	ENSGGOG00000017147	USB1	98	47.510	Gorilla_gorilla
ENSPNAG00000011736	usb1	83	58.776	ENSHBUG00000009823	usb1	93	56.489	Haplochromis_burtoni
ENSPNAG00000011736	usb1	99	44.521	ENSHGLG00000016078	USB1	82	51.570	Heterocephalus_glaber_female
ENSPNAG00000011736	usb1	99	44.521	ENSHGLG00100005562	USB1	82	51.570	Heterocephalus_glaber_male
ENSPNAG00000011736	usb1	73	60.648	ENSHCOG00000015633	usb1	86	60.987	Hippocampus_comes
ENSPNAG00000011736	usb1	100	69.388	ENSIPUG00000008601	usb1	100	70.608	Ictalurus_punctatus
ENSPNAG00000011736	usb1	81	50.209	ENSSTOG00000007548	USB1	88	50.209	Ictidomys_tridecemlineatus
ENSPNAG00000011736	usb1	99	46.416	ENSJJAG00000021859	Usb1	89	50.209	Jaculus_jaculus
ENSPNAG00000011736	usb1	76	66.518	ENSKMAG00000007200	usb1	79	66.518	Kryptolebias_marmoratus
ENSPNAG00000011736	usb1	76	58.296	ENSLBEG00000008452	usb1	70	58.296	Labrus_bergylta
ENSPNAG00000011736	usb1	80	50.638	ENSLACG00000000105	USB1	81	50.638	Latimeria_chalumnae
ENSPNAG00000011736	usb1	84	56.917	ENSLOCG00000000465	usb1	90	56.917	Lepisosteus_oculatus
ENSPNAG00000011736	usb1	99	40.136	ENSLAFG00000002267	USB1	84	45.175	Loxodonta_africana
ENSPNAG00000011736	usb1	76	52.232	ENSMFAG00000003926	USB1	98	47.510	Macaca_fascicularis
ENSPNAG00000011736	usb1	76	52.232	ENSMMUG00000022669	USB1	98	47.510	Macaca_mulatta
ENSPNAG00000011736	usb1	76	51.786	ENSMNEG00000042487	USB1	98	47.126	Macaca_nemestrina
ENSPNAG00000011736	usb1	76	52.232	ENSMLEG00000028756	USB1	98	47.510	Mandrillus_leucophaeus
ENSPNAG00000011736	usb1	100	59.459	ENSMAMG00000015092	usb1	99	58.446	Mastacembelus_armatus
ENSPNAG00000011736	usb1	87	57.031	ENSMZEG00005010008	usb1	89	57.031	Maylandia_zebra
ENSPNAG00000011736	usb1	99	45.392	ENSMAUG00000007832	Usb1	90	49.791	Mesocricetus_auratus
ENSPNAG00000011736	usb1	99	44.369	ENSMICG00000004900	USB1	98	44.710	Microcebus_murinus
ENSPNAG00000011736	usb1	99	46.075	ENSMOCG00000022647	Usb1	84	53.125	Microtus_ochrogaster
ENSPNAG00000011736	usb1	76	63.839	ENSMMOG00000000490	usb1	96	59.036	Mola_mola
ENSPNAG00000011736	usb1	74	52.511	ENSMODG00000014067	USB1	95	50.000	Monodelphis_domestica
ENSPNAG00000011736	usb1	76	63.393	ENSMALG00000005930	usb1	79	63.393	Monopterus_albus
ENSPNAG00000011736	usb1	99	46.758	MGP_CAROLIEiJ_G0031421	Usb1	99	52.679	Mus_caroli
ENSPNAG00000011736	usb1	99	46.102	ENSMUSG00000031792	Usb1	99	51.786	Mus_musculus
ENSPNAG00000011736	usb1	76	52.232	MGP_PahariEiJ_G0023019	Usb1	100	51.282	Mus_pahari
ENSPNAG00000011736	usb1	99	46.416	MGP_SPRETEiJ_G0032540	Usb1	84	52.679	Mus_spretus
ENSPNAG00000011736	usb1	81	52.720	ENSMPUG00000004684	USB1	93	49.421	Mustela_putorius_furo
ENSPNAG00000011736	usb1	76	52.679	ENSMLUG00000007400	USB1	97	52.679	Myotis_lucifugus
ENSPNAG00000011736	usb1	85	49.020	ENSNGAG00000009703	Usb1	91	49.020	Nannospalax_galili
ENSPNAG00000011736	usb1	83	54.251	ENSNBRG00000008747	usb1	99	61.215	Neolamprologus_brichardi
ENSPNAG00000011736	usb1	71	51.675	ENSNLEG00000003340	USB1	98	47.154	Nomascus_leucogenys
ENSPNAG00000011736	usb1	99	45.051	ENSODEG00000016214	USB1	84	50.893	Octodon_degus
ENSPNAG00000011736	usb1	100	53.041	ENSONIG00000011063	usb1	88	59.184	Oreochromis_niloticus
ENSPNAG00000011736	usb1	77	53.097	ENSOANG00000012118	USB1	95	53.097	Ornithorhynchus_anatinus
ENSPNAG00000011736	usb1	80	61.441	ENSORLG00000012479	usb1	86	61.441	Oryzias_latipes
ENSPNAG00000011736	usb1	80	60.593	ENSORLG00020018671	usb1	87	60.593	Oryzias_latipes_hni
ENSPNAG00000011736	usb1	80	61.441	ENSORLG00015009679	usb1	87	61.441	Oryzias_latipes_hsok
ENSPNAG00000011736	usb1	76	64.286	ENSOMEG00000012930	usb1	81	64.286	Oryzias_melastigma
ENSPNAG00000011736	usb1	76	48.661	ENSOGAG00000003273	USB1	83	48.661	Otolemur_garnettii
ENSPNAG00000011736	usb1	86	49.606	ENSOARG00000001107	USB1	97	49.606	Ovis_aries
ENSPNAG00000011736	usb1	76	51.339	ENSPPAG00000042137	USB1	98	47.126	Pan_paniscus
ENSPNAG00000011736	usb1	76	50.893	ENSPPRG00000024797	USB1	96	47.451	Panthera_pardus
ENSPNAG00000011736	usb1	76	50.446	ENSPTIG00000007506	USB1	84	50.446	Panthera_tigris_altaica
ENSPNAG00000011736	usb1	76	49.554	ENSPTRG00000008172	USB1	100	51.402	Pan_troglodytes
ENSPNAG00000011736	usb1	76	52.232	ENSPANG00000025138	USB1	98	47.510	Papio_anubis
ENSPNAG00000011736	usb1	95	54.676	ENSPKIG00000015109	usb1	93	54.676	Paramormyrops_kingsleyae
ENSPNAG00000011736	usb1	76	42.553	ENSPSIG00000004305	USB1	100	42.553	Pelodiscus_sinensis
ENSPNAG00000011736	usb1	78	58.772	ENSPMGG00000017725	usb1	93	56.098	Periophthalmus_magnuspinnatus
ENSPNAG00000011736	usb1	76	52.232	ENSPEMG00000016183	Usb1	82	52.232	Peromyscus_maniculatus_bairdii
ENSPNAG00000011736	usb1	77	51.092	ENSPMAG00000000462	usb1	97	51.092	Petromyzon_marinus
ENSPNAG00000011736	usb1	100	56.610	ENSPFOG00000011130	usb1	91	60.392	Poecilia_formosa
ENSPNAG00000011736	usb1	100	55.932	ENSPLAG00000009820	usb1	91	59.608	Poecilia_latipinna
ENSPNAG00000011736	usb1	100	55.219	ENSPMEG00000006402	usb1	81	66.222	Poecilia_mexicana
ENSPNAG00000011736	usb1	89	53.232	ENSPREG00000001047	usb1	78	65.285	Poecilia_reticulata
ENSPNAG00000011736	usb1	71	48.815	ENSPPYG00000007401	USB1	98	44.758	Pongo_abelii
ENSPNAG00000011736	usb1	99	45.051	ENSPCOG00000022612	USB1	98	44.369	Propithecus_coquereli
ENSPNAG00000011736	usb1	76	50.000	ENSPVAG00000004613	USB1	86	50.000	Pteropus_vampyrus
ENSPNAG00000011736	usb1	87	56.489	ENSPNYG00000022262	usb1	93	56.489	Pundamilia_nyererei
ENSPNAG00000011736	usb1	99	45.392	ENSRNOG00000013216	Usb1	84	51.786	Rattus_norvegicus
ENSPNAG00000011736	usb1	73	51.869	ENSRBIG00000044466	USB1	100	51.869	Rhinopithecus_bieti
ENSPNAG00000011736	usb1	76	52.232	ENSRROG00000029211	USB1	85	52.232	Rhinopithecus_roxellana
ENSPNAG00000011736	usb1	76	52.679	ENSSBOG00000029362	USB1	85	52.679	Saimiri_boliviensis_boliviensis
ENSPNAG00000011736	usb1	74	49.083	ENSSHAG00000006993	USB1	99	46.825	Sarcophilus_harrisii
ENSPNAG00000011736	usb1	88	61.240	ENSSFOG00015023663	usb1	81	61.240	Scleropages_formosus
ENSPNAG00000011736	usb1	87	55.882	ENSSMAG00000015834	usb1	90	55.882	Scophthalmus_maximus
ENSPNAG00000011736	usb1	76	66.518	ENSSDUG00000002949	usb1	83	66.518	Seriola_dumerili
ENSPNAG00000011736	usb1	76	66.071	ENSSLDG00000014174	usb1	80	66.071	Seriola_lalandi_dorsalis
ENSPNAG00000011736	usb1	73	54.673	ENSSPUG00000006741	USB1	100	54.673	Sphenodon_punctatus
ENSPNAG00000011736	usb1	100	53.898	ENSSPAG00000007484	usb1	79	63.393	Stegastes_partitus
ENSPNAG00000011736	usb1	81	50.209	ENSSSCG00000002807	USB1	89	50.209	Sus_scrofa
ENSPNAG00000011736	usb1	72	55.924	ENSTGUG00000004792	USB1	88	54.667	Taeniopygia_guttata
ENSPNAG00000011736	usb1	100	54.730	ENSTRUG00000021069	usb1	93	59.127	Takifugu_rubripes
ENSPNAG00000011736	usb1	76	56.696	ENSTNIG00000000626	usb1	83	56.696	Tetraodon_nigroviridis
ENSPNAG00000011736	usb1	76	38.393	ENSTBEG00000001507	USB1	97	38.393	Tupaia_belangeri
ENSPNAG00000011736	usb1	81	51.046	ENSUAMG00000016823	USB1	89	51.046	Ursus_americanus
ENSPNAG00000011736	usb1	73	52.336	ENSUMAG00000021369	USB1	100	52.336	Ursus_maritimus
ENSPNAG00000011736	usb1	84	48.387	ENSVVUG00000023700	USB1	86	52.018	Vulpes_vulpes
ENSPNAG00000011736	usb1	74	56.621	ENSXETG00000013795	usb1	90	56.637	Xenopus_tropicalis
ENSPNAG00000011736	usb1	76	64.000	ENSXMAG00000024687	usb1	66	64.000	Xiphophorus_maculatus