EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000012799 (Gene tree)
Gene ID: 108433677
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 3758 bases
Position: chrKV575426.1:93436-97193
Accession: 108433677
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000006814	zf-U1	PF06220.12	1.2e-22	1	1
ENSPNAP00000027321	zf-U1	PF06220.12	1.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000002868	-	601	XM_017708399	ENSPNAP00000027321	158 (aa)	XP_017563888	UPI000814A1DE
ENSPNAT00000002896	-	459	-	ENSPNAP00000006814	152 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000012799's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000012799's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000012799	snrpc	100	73.684	ENSAPOG00000013907	snrpc	100	83.019	Acanthochromis_polyacanthus
ENSPNAG00000012799	snrpc	100	73.684	ENSAOCG00000021151	snrpc	100	83.019	Amphiprion_ocellaris
ENSPNAG00000012799	snrpc	100	73.684	ENSAPEG00000023221	snrpc	100	83.019	Amphiprion_percula
ENSPNAG00000012799	snrpc	100	73.684	ENSATEG00000025133	snrpc	100	83.019	Anabas_testudineus
ENSPNAG00000012799	snrpc	100	78.616	ENSANAG00000007843	-	100	78.616	Aotus_nancymaae
ENSPNAG00000012799	snrpc	100	80.000	ENSANAG00000019157	-	100	76.101	Aotus_nancymaae
ENSPNAG00000012799	snrpc	100	62.025	ENSANAG00000021444	-	100	58.228	Aotus_nancymaae
ENSPNAG00000012799	snrpc	99	76.582	ENSANAG00000020588	-	92	72.785	Aotus_nancymaae
ENSPNAG00000012799	snrpc	100	78.481	ENSANAG00000019726	-	92	75.316	Aotus_nancymaae
ENSPNAG00000012799	snrpc	100	67.925	ENSANAG00000021026	-	100	65.190	Aotus_nancymaae
ENSPNAG00000012799	snrpc	100	98.113	ENSAMXG00000032641	snrpc	87	98.113	Astyanax_mexicanus
ENSPNAG00000012799	snrpc	100	78.616	ENSCJAG00000043055	-	100	78.616	Callithrix_jacchus
ENSPNAG00000012799	snrpc	100	65.625	ENSCAFG00000025525	-	100	54.444	Canis_familiaris
ENSPNAG00000012799	snrpc	100	76.730	ENSCAFG00000031775	-	100	76.730	Canis_familiaris
ENSPNAG00000012799	snrpc	100	76.730	ENSCAFG00020017383	-	100	76.730	Canis_lupus_dingo
ENSPNAG00000012799	snrpc	99	68.790	ENSCAFG00020009944	-	90	69.427	Canis_lupus_dingo
ENSPNAG00000012799	snrpc	100	66.667	ENSCHIG00000005039	-	100	60.116	Capra_hircus
ENSPNAG00000012799	snrpc	81	80.620	ENSTSYG00000029745	-	74	80.952	Carlito_syrichta
ENSPNAG00000012799	snrpc	100	64.151	ENSTSYG00000025721	-	100	62.092	Carlito_syrichta
ENSPNAG00000012799	snrpc	89	80.282	ENSCAPG00000005161	SNRPC	100	77.465	Cavia_aperea
ENSPNAG00000012799	snrpc	98	71.154	ENSCCAG00000022751	-	95	71.154	Cebus_capucinus
ENSPNAG00000012799	snrpc	98	62.179	ENSCCAG00000022209	-	95	59.615	Cebus_capucinus
ENSPNAG00000012799	snrpc	100	73.585	ENSCCAG00000036059	-	89	74.214	Cebus_capucinus
ENSPNAG00000012799	snrpc	100	59.748	ENSCCAG00000028293	-	100	59.494	Cebus_capucinus
ENSPNAG00000012799	snrpc	99	71.069	ENSCLAG00000010242	-	96	65.605	Chinchilla_lanigera
ENSPNAG00000012799	snrpc	100	67.925	ENSCHOG00000011439	SNRPC	88	68.790	Choloepus_hoffmanni
ENSPNAG00000012799	snrpc	89	80.282	ENSCANG00000028035	SNRPC	100	79.245	Colobus_angolensis_palliatus
ENSPNAG00000012799	snrpc	100	84.177	ENSCSEG00000016845	snrpc	100	85.535	Cynoglossus_semilaevis
ENSPNAG00000012799	snrpc	100	73.684	ENSCVAG00000014297	snrpc	100	79.245	Cyprinodon_variegatus
ENSPNAG00000012799	snrpc	100	86.792	ENSDARG00000009871	snrpc	100	87.421	Danio_rerio
ENSPNAG00000012799	snrpc	98	68.153	ENSETEG00000011265	-	100	72.436	Echinops_telfairi
ENSPNAG00000012799	snrpc	99	66.456	ENSEEUG00000014633	SNRPC	90	66.456	Erinaceus_europaeus
ENSPNAG00000012799	snrpc	100	80.503	ENSELUG00000000815	SNRPC	100	83.019	Esox_lucius
ENSPNAG00000012799	snrpc	100	84.568	ENSELUG00000020489	snrpc	100	75.625	Esox_lucius
ENSPNAG00000012799	snrpc	75	88.235	ENSFHEG00000016667	snrpc	97	88.235	Fundulus_heteroclitus
ENSPNAG00000012799	snrpc	100	73.026	ENSGAFG00000016115	snrpc	100	78.616	Gambusia_affinis
ENSPNAG00000012799	snrpc	99	72.667	ENSGACG00000004899	snrpc	98	82.166	Gasterosteus_aculeatus
ENSPNAG00000012799	snrpc	81	65.625	ENSHGLG00000005871	-	100	63.924	Heterocephalus_glaber_female
ENSPNAG00000012799	snrpc	100	69.182	ENSHGLG00000017741	-	100	69.811	Heterocephalus_glaber_female
ENSPNAG00000012799	snrpc	100	76.101	ENSHGLG00100017764	-	100	76.101	Heterocephalus_glaber_male
ENSPNAG00000012799	snrpc	100	69.182	ENSHGLG00100010786	-	100	69.811	Heterocephalus_glaber_male
ENSPNAG00000012799	snrpc	100	96.226	ENSIPUG00000024851	snrpc	100	96.226	Ictalurus_punctatus
ENSPNAG00000012799	snrpc	100	82.911	ENSKMAG00000016356	snrpc	100	83.648	Kryptolebias_marmoratus
ENSPNAG00000012799	snrpc	89	80.282	ENSMFAG00000031764	-	100	79.245	Macaca_fascicularis
ENSPNAG00000012799	snrpc	100	78.481	ENSMMUG00000039415	-	100	77.987	Macaca_mulatta
ENSPNAG00000012799	snrpc	100	69.182	ENSMMUG00000045425	-	100	69.811	Macaca_mulatta
ENSPNAG00000012799	snrpc	97	59.477	ENSMLEG00000039724	-	81	59.477	Mandrillus_leucophaeus
ENSPNAG00000012799	snrpc	97	76.774	ENSMLEG00000040224	-	89	72.258	Mandrillus_leucophaeus
ENSPNAG00000012799	snrpc	100	73.684	ENSMAMG00000003857	snrpc	100	83.019	Mastacembelus_armatus
ENSPNAG00000012799	snrpc	100	69.620	ENSMICG00000036552	-	87	69.032	Microcebus_murinus
ENSPNAG00000012799	snrpc	100	78.616	ENSMICG00000032183	-	100	78.616	Microcebus_murinus
ENSPNAG00000012799	snrpc	98	81.290	ENSMMOG00000013149	snrpc	100	78.846	Mola_mola
ENSPNAG00000012799	snrpc	62	65.957	ENSMODG00000025263	-	100	66.038	Monodelphis_domestica
ENSPNAG00000012799	snrpc	100	71.069	ENSMALG00000001197	snrpc	100	78.616	Monopterus_albus
ENSPNAG00000012799	snrpc	89	79.577	ENSMUSG00000024217	Snrpc	100	78.616	Mus_musculus
ENSPNAG00000012799	snrpc	89	80.282	ENSMEUG00000009300	SNRPC	100	77.465	Notamacropus_eugenii
ENSPNAG00000012799	snrpc	61	79.381	ENSODEG00000006008	-	100	64.029	Octodon_degus
ENSPNAG00000012799	snrpc	89	78.082	ENSOANG00000003405	SNRPC	100	74.324	Ornithorhynchus_anatinus
ENSPNAG00000012799	snrpc	60	85.263	ENSOCUG00000023292	-	100	77.987	Oryctolagus_cuniculus
ENSPNAG00000012799	snrpc	64	74.227	ENSORLG00000007308	snrpc	97	82.353	Oryzias_latipes
ENSPNAG00000012799	snrpc	75	88.235	ENSOMEG00000012014	snrpc	86	81.875	Oryzias_melastigma
ENSPNAG00000012799	snrpc	97	71.895	ENSOGAG00000028405	-	99	69.935	Otolemur_garnettii
ENSPNAG00000012799	snrpc	100	77.358	ENSOGAG00000026269	-	100	77.358	Otolemur_garnettii
ENSPNAG00000012799	snrpc	100	57.233	ENSPPRG00000010967	-	89	54.430	Panthera_pardus
ENSPNAG00000012799	snrpc	96	47.712	ENSPPRG00000016017	-	62	42.453	Panthera_pardus
ENSPNAG00000012799	snrpc	95	46.667	ENSPTIG00000013329	-	82	54.305	Panthera_tigris_altaica
ENSPNAG00000012799	snrpc	100	50.980	ENSPTIG00000011880	-	88	47.059	Panthera_tigris_altaica
ENSPNAG00000012799	snrpc	100	67.925	ENSPANG00000018228	-	94	68.553	Papio_anubis
ENSPNAG00000012799	snrpc	59	92.553	ENSPKIG00000003136	snrpc	100	86.452	Paramormyrops_kingsleyae
ENSPNAG00000012799	snrpc	100	77.987	ENSPKIG00000001671	SNRPC	100	79.874	Paramormyrops_kingsleyae
ENSPNAG00000012799	snrpc	99	74.000	ENSPMGG00000022162	snrpc	100	73.077	Periophthalmus_magnuspinnatus
ENSPNAG00000012799	snrpc	100	74.051	ENSPEMG00000002763	-	100	71.519	Peromyscus_maniculatus_bairdii
ENSPNAG00000012799	snrpc	99	68.590	ENSPMAG00000000602	snrpc	98	62.179	Petromyzon_marinus
ENSPNAG00000012799	snrpc	100	73.026	ENSPFOG00000015174	snrpc	100	78.616	Poecilia_formosa
ENSPNAG00000012799	snrpc	100	73.026	ENSPLAG00000012311	snrpc	100	78.616	Poecilia_latipinna
ENSPNAG00000012799	snrpc	100	73.026	ENSPMEG00000010274	snrpc	100	78.616	Poecilia_mexicana
ENSPNAG00000012799	snrpc	99	73.377	ENSPREG00000013017	snrpc	79	75.484	Poecilia_reticulata
ENSPNAG00000012799	snrpc	84	68.939	ENSPNYG00000004900	snrpc	100	67.333	Pundamilia_nyererei
ENSPNAG00000012799	snrpc	100	69.811	ENSRBIG00000036353	-	83	69.811	Rhinopithecus_bieti
ENSPNAG00000012799	snrpc	98	69.677	ENSSBOG00000032882	-	93	68.387	Saimiri_boliviensis_boliviensis
ENSPNAG00000012799	snrpc	98	71.795	ENSSBOG00000023189	-	91	68.590	Saimiri_boliviensis_boliviensis
ENSPNAG00000012799	snrpc	95	63.333	ENSSBOG00000032361	-	100	60.000	Saimiri_boliviensis_boliviensis
ENSPNAG00000012799	snrpc	62	65.957	ENSSHAG00000002972	-	100	66.038	Sarcophilus_harrisii
ENSPNAG00000012799	snrpc	58	95.652	ENSSFOG00015022422	snrpc	99	83.871	Scleropages_formosus
ENSPNAG00000012799	snrpc	100	77.358	ENSSFOG00015019150	snrpc	100	77.358	Scleropages_formosus
ENSPNAG00000012799	snrpc	100	73.684	ENSSMAG00000008029	snrpc	100	83.019	Scophthalmus_maximus
ENSPNAG00000012799	snrpc	100	73.684	ENSSDUG00000018895	snrpc	81	83.019	Seriola_dumerili
ENSPNAG00000012799	snrpc	100	73.684	ENSSLDG00000005034	snrpc	100	83.019	Seriola_lalandi_dorsalis
ENSPNAG00000012799	snrpc	100	73.684	ENSSPAG00000000914	snrpc	100	83.019	Stegastes_partitus
ENSPNAG00000012799	snrpc	100	69.620	ENSTRUG00000021651	snrpc	100	77.987	Takifugu_rubripes
ENSPNAG00000012799	snrpc	100	75.776	ENSTNIG00000018307	snrpc	100	77.160	Tetraodon_nigroviridis
ENSPNAG00000012799	snrpc	60	80.000	ENSTBEG00000015356	-	100	65.161	Tupaia_belangeri
ENSPNAG00000012799	snrpc	62	80.612	ENSTBEG00000013022	-	100	72.436	Tupaia_belangeri
ENSPNAG00000012799	snrpc	89	58.451	ENSTBEG00000016759	-	79	58.451	Tupaia_belangeri
ENSPNAG00000012799	snrpc	97	79.221	ENSVVUG00000010467	-	87	74.359	Vulpes_vulpes
ENSPNAG00000012799	snrpc	100	72.500	ENSXETG00000024721	snrpc	100	82.390	Xenopus_tropicalis
ENSPNAG00000012799	snrpc	100	73.026	ENSXMAG00000017935	snrpc	100	78.616	Xiphophorus_maculatus