EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000012825 (Gene tree)
Gene ID: 108439719
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain-helicase-DNA-binding protein 6-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 74099 bases
Position: chrKV575608.1:556109-630207
Accession: 108439719
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000006594	ResIII	PF04851.15	3.8e-06	1	1
ENSPNAP00000006594	BRK	PF07533.16	1.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000003288	-	8580	XM_017718271	ENSPNAP00000006594	2859 (aa)	XP_017573760	-
ENSPNAT00000003322	-	1500	-	ENSPNAP00000006571	499 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000012825's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000012825's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000012825	chd6	70	66.331	ENSPNAG00000024141	chd9	80	66.619
ENSPNAG00000012825	chd6	63	66.187	ENSPNAG00000011245	chd7	86	65.988
ENSPNAG00000012825	chd6	52	62.754	ENSPNAG00000003683	chd8	57	62.491

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000012825	chd6	79	70.663	ENSG00000124177	CHD6	99	84.109	Homo_sapiens
ENSPNAG00000012825	chd6	90	68.980	ENSAPOG00000013736	chd6	85	71.990	Acanthochromis_polyacanthus
ENSPNAG00000012825	chd6	76	74.742	ENSAMEG00000009496	CHD6	79	73.455	Ailuropoda_melanoleuca
ENSPNAG00000012825	chd6	86	72.595	ENSATEG00000005608	chd6	77	73.079	Anabas_testudineus
ENSPNAG00000012825	chd6	72	75.066	ENSAPLG00000015592	CHD6	74	75.231	Anas_platyrhynchos
ENSPNAG00000012825	chd6	73	71.939	ENSACAG00000006842	CHD6	70	70.355	Anolis_carolinensis
ENSPNAG00000012825	chd6	79	70.705	ENSANAG00000037548	CHD6	94	86.990	Aotus_nancymaae
ENSPNAG00000012825	chd6	97	82.271	ENSAMXG00000009576	chd6	98	81.140	Astyanax_mexicanus
ENSPNAG00000012825	chd6	77	73.688	ENSBTAG00000005733	CHD6	80	73.329	Bos_taurus
ENSPNAG00000012825	chd6	76	73.983	ENSCJAG00000017920	CHD6	94	86.990	Callithrix_jacchus
ENSPNAG00000012825	chd6	79	71.170	ENSCAFG00000009236	CHD6	82	70.624	Canis_familiaris
ENSPNAG00000012825	chd6	79	71.308	ENSCAFG00020012906	CHD6	94	86.745	Canis_lupus_dingo
ENSPNAG00000012825	chd6	77	73.462	ENSCHIG00000017606	CHD6	80	73.203	Capra_hircus
ENSPNAG00000012825	chd6	66	79.869	ENSTSYG00000014635	CHD6	78	80.115	Carlito_syrichta
ENSPNAG00000012825	chd6	79	71.187	ENSCPOG00000015641	CHD6	81	70.989	Cavia_porcellus
ENSPNAG00000012825	chd6	76	73.806	ENSCCAG00000036828	CHD6	94	86.990	Cebus_capucinus
ENSPNAG00000012825	chd6	79	70.265	ENSCATG00000039248	CHD6	94	86.990	Cercocebus_atys
ENSPNAG00000012825	chd6	78	71.170	ENSCLAG00000013743	CHD6	81	70.911	Chinchilla_lanigera
ENSPNAG00000012825	chd6	79	71.480	ENSCSAG00000013997	CHD6	76	75.298	Chlorocebus_sabaeus
ENSPNAG00000012825	chd6	64	72.325	ENSCHOG00000012647	CHD6	68	72.543	Choloepus_hoffmanni
ENSPNAG00000012825	chd6	74	76.603	ENSCPBG00000019382	CHD6	77	74.934	Chrysemys_picta_bellii
ENSPNAG00000012825	chd6	79	70.705	ENSCANG00000043435	CHD6	94	86.990	Colobus_angolensis_palliatus
ENSPNAG00000012825	chd6	78	70.978	ENSCGRG00001002694	Chd6	75	75.336	Cricetulus_griseus_chok1gshd
ENSPNAG00000012825	chd6	99	75.723	ENSDARG00000017244	chd6	99	75.043	Danio_rerio
ENSPNAG00000012825	chd6	76	73.205	ENSDNOG00000004176	CHD6	79	73.132	Dasypus_novemcinctus
ENSPNAG00000012825	chd6	78	70.964	ENSEASG00005023433	CHD6	94	88.109	Equus_asinus_asinus
ENSPNAG00000012825	chd6	74	73.921	ENSECAG00000011761	CHD6	76	75.298	Equus_caballus
ENSPNAG00000012825	chd6	73	83.392	ENSELUG00000012309	chd6	93	83.392	Esox_lucius
ENSPNAG00000012825	chd6	79	71.360	ENSFCAG00000003572	CHD6	81	70.901	Felis_catus
ENSPNAG00000012825	chd6	75	75.098	ENSFALG00000012563	CHD6	76	75.182	Ficedula_albicollis
ENSPNAG00000012825	chd6	74	74.323	ENSFDAG00000013791	CHD6	76	75.182	Fukomys_damarensis
ENSPNAG00000012825	chd6	72	72.340	ENSGMOG00000011715	chd6	87	72.340	Gadus_morhua
ENSPNAG00000012825	chd6	78	72.150	ENSGACG00000000037	chd6	86	73.462	Gasterosteus_aculeatus
ENSPNAG00000012825	chd6	79	70.705	ENSGGOG00000013123	CHD6	94	86.990	Gorilla_gorilla
ENSPNAG00000012825	chd6	85	74.110	ENSHBUG00000014701	chd6	77	72.609	Haplochromis_burtoni
ENSPNAG00000012825	chd6	74	74.387	ENSHGLG00000004548	CHD6	78	73.300	Heterocephalus_glaber_female
ENSPNAG00000012825	chd6	74	74.387	ENSHGLG00100006401	CHD6	78	73.300	Heterocephalus_glaber_male
ENSPNAG00000012825	chd6	99	76.293	ENSIPUG00000003692	chd6	99	76.481	Ictalurus_punctatus
ENSPNAG00000012825	chd6	76	74.277	ENSSTOG00000013382	CHD6	79	73.535	Ictidomys_tridecemlineatus
ENSPNAG00000012825	chd6	81	70.117	ENSLACG00000010881	CHD6	83	69.433	Latimeria_chalumnae
ENSPNAG00000012825	chd6	71	82.129	ENSLOCG00000007386	chd6	84	77.557	Lepisosteus_oculatus
ENSPNAG00000012825	chd6	77	73.610	ENSLAFG00000012144	CHD6	79	73.598	Loxodonta_africana
ENSPNAG00000012825	chd6	79	70.705	ENSMFAG00000032830	CHD6	94	86.990	Macaca_fascicularis
ENSPNAG00000012825	chd6	79	70.542	ENSMMUG00000020458	CHD6	94	86.990	Macaca_mulatta
ENSPNAG00000012825	chd6	79	70.542	ENSMNEG00000040847	CHD6	94	86.990	Macaca_nemestrina
ENSPNAG00000012825	chd6	79	70.663	ENSMLEG00000031965	CHD6	94	86.990	Mandrillus_leucophaeus
ENSPNAG00000012825	chd6	86	73.213	ENSMAMG00000013111	chd6	78	72.205	Mastacembelus_armatus
ENSPNAG00000012825	chd6	76	72.527	ENSMGAG00000001121	CHD6	77	72.977	Meleagris_gallopavo
ENSPNAG00000012825	chd6	79	70.663	ENSMICG00000016641	CHD6	94	87.184	Microcebus_murinus
ENSPNAG00000012825	chd6	71	80.857	ENSMODG00000000720	-	78	80.732	Monodelphis_domestica
ENSPNAG00000012825	chd6	79	70.397	MGP_CAROLIEiJ_G0024604	Chd6	84	81.936	Mus_caroli
ENSPNAG00000012825	chd6	79	70.397	ENSMUSG00000057133	Chd6	82	83.113	Mus_musculus
ENSPNAG00000012825	chd6	79	70.252	MGP_PahariEiJ_G0026048	Chd6	84	81.836	Mus_pahari
ENSPNAG00000012825	chd6	79	70.457	MGP_SPRETEiJ_G0025526	Chd6	84	82.036	Mus_spretus
ENSPNAG00000012825	chd6	76	74.533	ENSMPUG00000017695	CHD6	76	75.397	Mustela_putorius_furo
ENSPNAG00000012825	chd6	77	73.084	ENSMLUG00000016247	CHD6	79	73.195	Myotis_lucifugus
ENSPNAG00000012825	chd6	91	71.599	ENSNBRG00000013839	chd6	97	70.293	Neolamprologus_brichardi
ENSPNAG00000012825	chd6	79	70.157	ENSNLEG00000006496	CHD6	81	69.964	Nomascus_leucogenys
ENSPNAG00000012825	chd6	76	71.686	ENSOPRG00000013376	-	75	73.409	Ochotona_princeps
ENSPNAG00000012825	chd6	79	79.537	ENSONIG00000000393	chd6	84	78.761	Oreochromis_niloticus
ENSPNAG00000012825	chd6	63	73.545	ENSOANG00000014347	CHD6	67	72.578	Ornithorhynchus_anatinus
ENSPNAG00000012825	chd6	77	73.299	ENSOCUG00000012394	CHD6	80	71.941	Oryctolagus_cuniculus
ENSPNAG00000012825	chd6	94	65.652	ENSORLG00020021891	chd6	95	89.379	Oryzias_latipes_hni
ENSPNAG00000012825	chd6	77	72.514	ENSOGAG00000002427	CHD6	76	75.166	Otolemur_garnettii
ENSPNAG00000012825	chd6	76	72.563	ENSOARG00000002597	CHD6	78	72.923	Ovis_aries
ENSPNAG00000012825	chd6	79	71.420	ENSPPRG00000014756	CHD6	81	70.962	Panthera_pardus
ENSPNAG00000012825	chd6	79	71.239	ENSPTIG00000011094	CHD6	81	70.780	Panthera_tigris_altaica
ENSPNAG00000012825	chd6	79	70.663	ENSPTRG00000013504	CHD6	94	86.990	Pan_troglodytes
ENSPNAG00000012825	chd6	79	70.542	ENSPANG00000025554	CHD6	94	86.990	Papio_anubis
ENSPNAG00000012825	chd6	99	63.361	ENSPKIG00000005578	chd6	71	76.744	Paramormyrops_kingsleyae
ENSPNAG00000012825	chd6	76	75.584	ENSPMGG00000014877	chd6	86	75.584	Periophthalmus_magnuspinnatus
ENSPNAG00000012825	chd6	76	74.984	ENSPCIG00000028037	CHD6	78	73.834	Phascolarctos_cinereus
ENSPNAG00000012825	chd6	89	68.086	ENSPLAG00000003128	chd6	80	71.772	Poecilia_latipinna
ENSPNAG00000012825	chd6	83	72.516	ENSPREG00000022653	chd6	99	89.194	Poecilia_reticulata
ENSPNAG00000012825	chd6	79	70.542	ENSPPYG00000011016	CHD6	81	71.092	Pongo_abelii
ENSPNAG00000012825	chd6	79	70.524	ENSPCOG00000001089	CHD6	94	86.990	Propithecus_coquereli
ENSPNAG00000012825	chd6	91	73.125	ENSPNYG00000022516	chd6	97	71.301	Pundamilia_nyererei
ENSPNAG00000012825	chd6	79	70.042	ENSRNOG00000016744	Chd6	75	75.118	Rattus_norvegicus
ENSPNAG00000012825	chd6	79	71.083	ENSSBOG00000022089	CHD6	94	86.990	Saimiri_boliviensis_boliviensis
ENSPNAG00000012825	chd6	76	74.755	ENSSHAG00000017072	CHD6	78	73.897	Sarcophilus_harrisii
ENSPNAG00000012825	chd6	97	65.663	ENSSFOG00015012920	chd6	98	65.079	Scleropages_formosus
ENSPNAG00000012825	chd6	75	74.918	ENSSSCG00000007360	CHD6	76	75.298	Sus_scrofa
ENSPNAG00000012825	chd6	75	75.346	ENSTGUG00000003179	CHD6	79	74.803	Taeniopygia_guttata
ENSPNAG00000012825	chd6	76	75.234	ENSTNIG00000017487	chd6	89	75.235	Tetraodon_nigroviridis
ENSPNAG00000012825	chd6	75	74.066	ENSTTRG00000013438	CHD6	77	73.751	Tursiops_truncatus
ENSPNAG00000012825	chd6	76	73.290	ENSUAMG00000024036	CHD6	94	86.745	Ursus_americanus
ENSPNAG00000012825	chd6	76	74.725	ENSUMAG00000002017	CHD6	94	86.745	Ursus_maritimus
ENSPNAG00000012825	chd6	70	75.424	ENSVPAG00000007941	CHD6	70	75.424	Vicugna_pacos
ENSPNAG00000012825	chd6	79	71.230	ENSVVUG00000029164	CHD6	81	70.972	Vulpes_vulpes
ENSPNAG00000012825	chd6	74	70.021	ENSXETG00000021445	chd6	74	67.740	Xenopus_tropicalis