EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000013072 (Gene tree)
Gene ID: 108434860
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 15464 bases
Position: chrKV575452.1:884268-899731
Accession: 108434860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000027559	KH_1	PF00013.29	4.4e-06	1	1
ENSPNAP00000027559	zf-CCHC	PF00098.23	0.00035	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000002230	-	3912	XM_017710283	ENSPNAP00000027559	664 (aa)	XP_017565772	UPI0008149F79

Gene Model

Click here to download ENSPNAG00000013072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000013072's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000013072	sf1	70	84.310	ENSAPOG00000012341	sf1	67	83.261	Acanthochromis_polyacanthus
ENSPNAG00000013072	sf1	97	85.714	ENSAOCG00000010934	sf1	97	85.714	Amphiprion_ocellaris
ENSPNAG00000013072	sf1	97	85.714	ENSAPEG00000009498	sf1	97	85.714	Amphiprion_percula
ENSPNAG00000013072	sf1	67	83.224	ENSATEG00000001894	sf1	67	83.983	Anabas_testudineus
ENSPNAG00000013072	sf1	85	65.630	ENSANAG00000022607	-	89	75.266	Aotus_nancymaae
ENSPNAG00000013072	sf1	59	80.779	ENSANAG00000026664	-	89	85.185	Aotus_nancymaae
ENSPNAG00000013072	sf1	67	84.152	ENSACLG00000007633	sf1	70	84.257	Astatotilapia_calliptera
ENSPNAG00000013072	sf1	97	93.798	ENSAMXG00000003630	sf1	86	93.798	Astyanax_mexicanus
ENSPNAG00000013072	sf1	59	78.606	ENSBTAG00000001035	SF1	62	85.450	Bos_taurus
ENSPNAG00000013072	sf1	59	78.606	ENSCJAG00000002780	SF1	75	70.955	Callithrix_jacchus
ENSPNAG00000013072	sf1	59	78.606	ENSCAFG00000014239	SF1	58	85.450	Canis_familiaris
ENSPNAG00000013072	sf1	59	78.606	ENSCAFG00020014381	SF1	58	85.450	Canis_lupus_dingo
ENSPNAG00000013072	sf1	59	78.606	ENSCHIG00000025867	SF1	68	85.450	Capra_hircus
ENSPNAG00000013072	sf1	59	78.935	ENSCAPG00000010762	SF1	66	85.600	Cavia_aperea
ENSPNAG00000013072	sf1	59	78.606	ENSCPOG00000012290	SF1	69	85.600	Cavia_porcellus
ENSPNAG00000013072	sf1	56	81.937	ENSCCAG00000037881	SF1	89	85.185	Cebus_capucinus
ENSPNAG00000013072	sf1	59	72.772	ENSCCAG00000023781	-	83	74.074	Cebus_capucinus
ENSPNAG00000013072	sf1	59	79.805	ENSCATG00000011564	SF1	89	85.185	Cercocebus_atys
ENSPNAG00000013072	sf1	59	78.606	ENSCSAG00000007258	SF1	68	85.450	Chlorocebus_sabaeus
ENSPNAG00000013072	sf1	57	75.190	ENSCHOG00000006008	SF1	78	70.370	Choloepus_hoffmanni
ENSPNAG00000013072	sf1	62	86.331	ENSCPBG00000023763	SF1	58	77.181	Chrysemys_picta_bellii
ENSPNAG00000013072	sf1	60	56.872	ENSCING00000005564	-	92	55.460	Ciona_intestinalis
ENSPNAG00000013072	sf1	52	56.986	ENSCSAVG00000009055	-	72	62.583	Ciona_savignyi
ENSPNAG00000013072	sf1	55	83.200	ENSCANG00000042201	SF1	89	85.185	Colobus_angolensis_palliatus
ENSPNAG00000013072	sf1	59	78.846	ENSCGRG00001003677	Sf1	65	85.450	Cricetulus_griseus_chok1gshd
ENSPNAG00000013072	sf1	59	79.805	ENSCGRG00000001708	Sf1	68	85.867	Cricetulus_griseus_crigri
ENSPNAG00000013072	sf1	97	83.537	ENSCSEG00000014375	sf1	65	83.370	Cynoglossus_semilaevis
ENSPNAG00000013072	sf1	67	82.159	ENSCVAG00000001670	sf1	68	81.917	Cyprinodon_variegatus
ENSPNAG00000013072	sf1	69	88.745	ENSDARG00000008188	sf1	65	94.278	Danio_rerio
ENSPNAG00000013072	sf1	59	78.846	ENSDNOG00000001282	SF1	68	85.450	Dasypus_novemcinctus
ENSPNAG00000013072	sf1	59	79.805	ENSDORG00000016334	Sf1	58	85.450	Dipodomys_ordii
ENSPNAG00000013072	sf1	59	74.447	ENSETEG00000012830	SF1	51	77.628	Echinops_telfairi
ENSPNAG00000013072	sf1	100	46.983	ENSEBUG00000012728	sf1	62	57.082	Eptatretus_burgeri
ENSPNAG00000013072	sf1	59	78.125	ENSEASG00005018272	SF1	68	84.921	Equus_asinus_asinus
ENSPNAG00000013072	sf1	59	78.365	ENSECAG00000024544	SF1	68	85.185	Equus_caballus
ENSPNAG00000013072	sf1	53	80.000	ENSEEUG00000001058	SF1	83	86.228	Erinaceus_europaeus
ENSPNAG00000013072	sf1	71	81.391	ENSELUG00000013225	sf1	60	84.599	Esox_lucius
ENSPNAG00000013072	sf1	59	78.606	ENSFCAG00000012231	SF1	75	71.961	Felis_catus
ENSPNAG00000013072	sf1	59	80.000	ENSFDAG00000009833	SF1	66	85.867	Fukomys_damarensis
ENSPNAG00000013072	sf1	97	80.030	ENSFHEG00000022656	sf1	68	83.007	Fundulus_heteroclitus
ENSPNAG00000013072	sf1	72	77.035	ENSGMOG00000007469	sf1	60	91.818	Gadus_morhua
ENSPNAG00000013072	sf1	90	82.160	ENSGAFG00000019284	sf1	70	86.667	Gambusia_affinis
ENSPNAG00000013072	sf1	62	86.091	ENSGAGG00000021691	SF1	68	74.897	Gopherus_agassizii
ENSPNAG00000013072	sf1	67	83.553	ENSHBUG00000011598	sf1	67	83.624	Haplochromis_burtoni
ENSPNAG00000013072	sf1	59	79.805	ENSHGLG00000009541	SF1	65	85.450	Heterocephalus_glaber_female
ENSPNAG00000013072	sf1	56	71.638	ENSHGLG00100008255	-	71	81.197	Heterocephalus_glaber_male
ENSPNAG00000013072	sf1	59	79.805	ENSHGLG00100013879	-	65	87.252	Heterocephalus_glaber_male
ENSPNAG00000013072	sf1	69	81.818	ENSHCOG00000011388	sf1	68	82.276	Hippocampus_comes
ENSPNAG00000013072	sf1	59	79.805	ENSSTOG00000009790	-	59	85.867	Ictidomys_tridecemlineatus
ENSPNAG00000013072	sf1	64	70.159	ENSSTOG00000024353	-	68	74.803	Ictidomys_tridecemlineatus
ENSPNAG00000013072	sf1	59	78.846	ENSJJAG00000011788	Sf1	58	85.714	Jaculus_jaculus
ENSPNAG00000013072	sf1	69	80.255	ENSKMAG00000005854	sf1	70	81.400	Kryptolebias_marmoratus
ENSPNAG00000013072	sf1	86	83.731	ENSLBEG00000019836	sf1	72	83.731	Labrus_bergylta
ENSPNAG00000013072	sf1	60	80.988	ENSLACG00000018493	SF1	68	82.480	Latimeria_chalumnae
ENSPNAG00000013072	sf1	67	82.937	ENSLOCG00000002130	sf1	73	84.120	Lepisosteus_oculatus
ENSPNAG00000013072	sf1	59	80.241	ENSLAFG00000007201	SF1	63	85.411	Loxodonta_africana
ENSPNAG00000013072	sf1	59	79.805	ENSMFAG00000033122	SF1	89	85.185	Macaca_fascicularis
ENSPNAG00000013072	sf1	60	79.426	ENSMMUG00000022606	SF1	90	85.867	Macaca_mulatta
ENSPNAG00000013072	sf1	59	79.805	ENSMNEG00000037901	SF1	89	85.185	Macaca_nemestrina
ENSPNAG00000013072	sf1	64	75.506	ENSMLEG00000040706	SF1	89	85.600	Mandrillus_leucophaeus
ENSPNAG00000013072	sf1	97	84.179	ENSMAMG00000001780	sf1	97	84.179	Mastacembelus_armatus
ENSPNAG00000013072	sf1	67	83.553	ENSMZEG00005009196	sf1	67	83.624	Maylandia_zebra
ENSPNAG00000013072	sf1	59	79.805	ENSMAUG00000014064	Sf1	65	85.450	Mesocricetus_auratus
ENSPNAG00000013072	sf1	59	79.805	ENSMICG00000001202	SF1	89	84.960	Microcebus_murinus
ENSPNAG00000013072	sf1	59	80.049	ENSMOCG00000022038	Sf1	65	85.450	Microtus_ochrogaster
ENSPNAG00000013072	sf1	86	81.359	ENSMMOG00000020474	sf1	73	83.231	Mola_mola
ENSPNAG00000013072	sf1	59	79.376	ENSMODG00000029407	SF1	81	85.714	Monodelphis_domestica
ENSPNAG00000013072	sf1	84	80.927	ENSMALG00000020521	sf1	80	82.857	Monopterus_albus
ENSPNAG00000013072	sf1	59	79.805	MGP_CAROLIEiJ_G0022607	Sf1	99	95.865	Mus_caroli
ENSPNAG00000013072	sf1	59	79.805	ENSMUSG00000024949	Sf1	99	95.865	Mus_musculus
ENSPNAG00000013072	sf1	59	79.805	MGP_PahariEiJ_G0014101	Sf1	99	95.865	Mus_pahari
ENSPNAG00000013072	sf1	59	79.805	MGP_SPRETEiJ_G0023518	Sf1	99	95.865	Mus_spretus
ENSPNAG00000013072	sf1	59	79.805	ENSMPUG00000012684	SF1	58	85.450	Mustela_putorius_furo
ENSPNAG00000013072	sf1	59	78.606	ENSMLUG00000015217	-	58	85.185	Myotis_lucifugus
ENSPNAG00000013072	sf1	63	75.799	ENSMLUG00000029800	-	64	81.481	Myotis_lucifugus
ENSPNAG00000013072	sf1	59	80.049	ENSNGAG00000005550	Sf1	65	85.714	Nannospalax_galili
ENSPNAG00000013072	sf1	74	78.340	ENSNBRG00000017606	sf1	72	79.394	Neolamprologus_brichardi
ENSPNAG00000013072	sf1	59	79.805	ENSNLEG00000005236	-	89	85.185	Nomascus_leucogenys
ENSPNAG00000013072	sf1	59	79.126	ENSMEUG00000013424	SF1	69	86.253	Notamacropus_eugenii
ENSPNAG00000013072	sf1	53	79.730	ENSOPRG00000005008	SF1	66	86.527	Ochotona_princeps
ENSPNAG00000013072	sf1	67	83.333	ENSONIG00000015728	sf1	67	83.406	Oreochromis_niloticus
ENSPNAG00000013072	sf1	50	77.551	ENSOANG00000002909	SF1	76	80.769	Ornithorhynchus_anatinus
ENSPNAG00000013072	sf1	59	78.846	ENSOCUG00000026486	SF1	59	85.185	Oryctolagus_cuniculus
ENSPNAG00000013072	sf1	69	82.013	ENSORLG00000011853	sf1	66	83.480	Oryzias_latipes
ENSPNAG00000013072	sf1	69	82.479	ENSORLG00020011834	sf1	66	83.850	Oryzias_latipes_hni
ENSPNAG00000013072	sf1	67	82.705	ENSORLG00015012855	sf1	66	82.819	Oryzias_latipes_hsok
ENSPNAG00000013072	sf1	69	83.298	ENSOMEG00000005210	sf1	67	84.257	Oryzias_melastigma
ENSPNAG00000013072	sf1	59	78.606	ENSOGAG00000016196	SF1	58	85.450	Otolemur_garnettii
ENSPNAG00000013072	sf1	59	79.805	ENSOARG00000009166	SF1	65	85.450	Ovis_aries
ENSPNAG00000013072	sf1	59	81.418	ENSPPAG00000002799	-	91	85.185	Pan_paniscus
ENSPNAG00000013072	sf1	59	79.805	ENSPPRG00000013566	SF1	58	86.981	Panthera_pardus
ENSPNAG00000013072	sf1	59	79.805	ENSPTIG00000016141	SF1	67	85.450	Panthera_tigris_altaica
ENSPNAG00000013072	sf1	59	81.174	ENSPTRG00000003846	SF1	89	85.185	Pan_troglodytes
ENSPNAG00000013072	sf1	59	79.805	ENSPANG00000020754	SF1	89	85.185	Papio_anubis
ENSPNAG00000013072	sf1	59	80.535	ENSPEMG00000010463	Sf1	65	85.450	Peromyscus_maniculatus_bairdii
ENSPNAG00000013072	sf1	60	79.048	ENSPCIG00000018173	SF1	60	85.714	Phascolarctos_cinereus
ENSPNAG00000013072	sf1	97	83.333	ENSPFOG00000013683	sf1	61	90.191	Poecilia_formosa
ENSPNAG00000013072	sf1	90	84.375	ENSPLAG00000018076	sf1	62	83.824	Poecilia_latipinna
ENSPNAG00000013072	sf1	97	83.384	ENSPMEG00000005726	sf1	68	82.251	Poecilia_mexicana
ENSPNAG00000013072	sf1	97	83.535	ENSPREG00000004155	sf1	68	82.035	Poecilia_reticulata
ENSPNAG00000013072	sf1	59	78.606	ENSPPYG00000003098	-	70	85.450	Pongo_abelii
ENSPNAG00000013072	sf1	68	69.838	ENSPCAG00000013631	SF1	75	70.270	Procavia_capensis
ENSPNAG00000013072	sf1	59	79.612	ENSPCOG00000027546	SF1	89	84.960	Propithecus_coquereli
ENSPNAG00000013072	sf1	67	83.772	ENSPNYG00000004673	sf1	67	83.478	Pundamilia_nyererei
ENSPNAG00000013072	sf1	59	78.846	ENSRNOG00000021085	Sf1	61	85.806	Rattus_norvegicus
ENSPNAG00000013072	sf1	59	80.535	ENSRBIG00000042818	SF1	89	85.185	Rhinopithecus_bieti
ENSPNAG00000013072	sf1	59	80.535	ENSRROG00000045655	SF1	89	85.600	Rhinopithecus_roxellana
ENSPNAG00000013072	sf1	51	38.418	YLR116W	MSL5	56	44.322	Saccharomyces_cerevisiae
ENSPNAG00000013072	sf1	81	65.385	ENSSBOG00000022267	-	85	74.425	Saimiri_boliviensis_boliviensis
ENSPNAG00000013072	sf1	71	74.423	ENSSHAG00000006841	SF1	69	87.601	Sarcophilus_harrisii
ENSPNAG00000013072	sf1	70	84.211	ENSSFOG00015021978	sf1	68	83.940	Scleropages_formosus
ENSPNAG00000013072	sf1	84	80.928	ENSSMAG00000007549	sf1	71	81.602	Scophthalmus_maximus
ENSPNAG00000013072	sf1	67	82.276	ENSSDUG00000003903	sf1	70	83.261	Seriola_dumerili
ENSPNAG00000013072	sf1	59	74.279	ENSSARG00000008180	SF1	71	81.067	Sorex_araneus
ENSPNAG00000013072	sf1	60	82.160	ENSSPUG00000012907	SF1	59	89.014	Sphenodon_punctatus
ENSPNAG00000013072	sf1	70	84.310	ENSSPAG00000019060	sf1	68	83.007	Stegastes_partitus
ENSPNAG00000013072	sf1	59	78.606	ENSSSCG00000013021	SF1	68	85.185	Sus_scrofa
ENSPNAG00000013072	sf1	73	68.893	ENSTNIG00000004820	sf1	72	74.611	Tetraodon_nigroviridis
ENSPNAG00000013072	sf1	59	74.568	ENSTBEG00000013133	SF1	62	69.281	Tupaia_belangeri
ENSPNAG00000013072	sf1	59	73.798	ENSTTRG00000008857	SF1	68	80.267	Tursiops_truncatus
ENSPNAG00000013072	sf1	59	83.168	ENSUMAG00000007268	SF1	71	85.450	Ursus_maritimus
ENSPNAG00000013072	sf1	59	78.606	ENSVVUG00000028585	SF1	68	85.450	Vulpes_vulpes
ENSPNAG00000013072	sf1	85	73.402	ENSXETG00000008434	sf1	62	88.202	Xenopus_tropicalis
ENSPNAG00000013072	sf1	54	90.055	ENSXCOG00000003704	sf1	69	89.835	Xiphophorus_couchianus
ENSPNAG00000013072	sf1	97	83.384	ENSXMAG00000007822	sf1	70	82.251	Xiphophorus_maculatus