EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000013707 (Gene tree)
Gene ID: 108414839
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 4233 bases
Position: chrKV576971.1:36382-40614
Accession: 108414839
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000028106	LSM	PF01423.22	1.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000000806	-	500	XM_017687740	ENSPNAP00000028106	133 (aa)	XP_017543229	UPI0008146079

Gene Model

Click here to download ENSPNAG00000013707's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000013707's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000013707	lsm1	56	33.333	ENSPNAG00000010252	lsm8	76	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000013707	lsm1	100	85.714	ENSG00000175324	LSM1	100	85.714	Homo_sapiens
ENSPNAG00000013707	lsm1	100	81.203	ENSAPOG00000010833	lsm1	100	81.203	Acanthochromis_polyacanthus
ENSPNAG00000013707	lsm1	100	85.714	ENSAMEG00000011141	LSM1	100	85.714	Ailuropoda_melanoleuca
ENSPNAG00000013707	lsm1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSPNAG00000013707	lsm1	100	81.203	ENSAOCG00000017096	lsm1	100	81.203	Amphiprion_ocellaris
ENSPNAG00000013707	lsm1	100	81.203	ENSAOCG00000017997	-	100	81.203	Amphiprion_ocellaris
ENSPNAG00000013707	lsm1	100	81.203	ENSAPEG00000011669	lsm1	100	81.203	Amphiprion_percula
ENSPNAG00000013707	lsm1	100	82.707	ENSATEG00000022266	lsm1	100	82.707	Anabas_testudineus
ENSPNAG00000013707	lsm1	100	85.714	ENSANAG00000027785	LSM1	100	85.714	Aotus_nancymaae
ENSPNAG00000013707	lsm1	100	82.707	ENSACLG00000011400	lsm1	100	82.707	Astatotilapia_calliptera
ENSPNAG00000013707	lsm1	100	99.248	ENSAMXG00000005441	lsm1	100	99.248	Astyanax_mexicanus
ENSPNAG00000013707	lsm1	100	84.962	ENSBTAG00000001612	LSM1	100	84.962	Bos_taurus
ENSPNAG00000013707	lsm1	87	50.847	WBGene00003076	lsm-1	90	50.847	Caenorhabditis_elegans
ENSPNAG00000013707	lsm1	100	84.962	ENSCJAG00000048015	LSM1	100	84.962	Callithrix_jacchus
ENSPNAG00000013707	lsm1	100	85.714	ENSCAFG00000006113	LSM1	100	85.714	Canis_familiaris
ENSPNAG00000013707	lsm1	100	85.714	ENSCAFG00020001822	LSM1	100	85.714	Canis_lupus_dingo
ENSPNAG00000013707	lsm1	100	85.714	ENSCHIG00000013194	LSM1	100	85.714	Capra_hircus
ENSPNAG00000013707	lsm1	100	85.714	ENSTSYG00000010394	LSM1	100	85.714	Carlito_syrichta
ENSPNAG00000013707	lsm1	100	85.714	ENSCPOG00000032671	LSM1	100	85.714	Cavia_porcellus
ENSPNAG00000013707	lsm1	100	85.714	ENSCCAG00000037171	LSM1	100	85.714	Cebus_capucinus
ENSPNAG00000013707	lsm1	100	85.714	ENSCATG00000020377	LSM1	100	85.714	Cercocebus_atys
ENSPNAG00000013707	lsm1	100	84.211	ENSCLAG00000001137	LSM1	100	84.211	Chinchilla_lanigera
ENSPNAG00000013707	lsm1	100	85.714	ENSCSAG00000015485	LSM1	100	85.714	Chlorocebus_sabaeus
ENSPNAG00000013707	lsm1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSPNAG00000013707	lsm1	95	81.102	ENSCPBG00000006569	LSM1	86	81.102	Chrysemys_picta_bellii
ENSPNAG00000013707	lsm1	100	67.669	ENSCING00000013536	-	100	67.669	Ciona_intestinalis
ENSPNAG00000013707	lsm1	100	85.714	ENSCANG00000019173	LSM1	100	85.714	Colobus_angolensis_palliatus
ENSPNAG00000013707	lsm1	100	84.962	ENSCGRG00001024560	-	100	84.962	Cricetulus_griseus_chok1gshd
ENSPNAG00000013707	lsm1	80	73.874	ENSCGRG00001002259	-	97	73.874	Cricetulus_griseus_chok1gshd
ENSPNAG00000013707	lsm1	80	73.874	ENSCGRG00000013603	-	97	73.874	Cricetulus_griseus_crigri
ENSPNAG00000013707	lsm1	100	84.962	ENSCGRG00000006554	-	100	84.962	Cricetulus_griseus_crigri
ENSPNAG00000013707	lsm1	100	81.955	ENSCSEG00000010570	lsm1	92	81.955	Cynoglossus_semilaevis
ENSPNAG00000013707	lsm1	100	81.203	ENSCSEG00000008319	lsm1	92	81.203	Cynoglossus_semilaevis
ENSPNAG00000013707	lsm1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSPNAG00000013707	lsm1	100	96.992	ENSDARG00000043177	lsm1	100	96.992	Danio_rerio
ENSPNAG00000013707	lsm1	99	81.818	ENSDNOG00000030989	-	99	81.818	Dasypus_novemcinctus
ENSPNAG00000013707	lsm1	89	66.387	ENSDNOG00000046620	-	100	66.387	Dasypus_novemcinctus
ENSPNAG00000013707	lsm1	100	85.714	ENSDNOG00000046387	-	100	85.714	Dasypus_novemcinctus
ENSPNAG00000013707	lsm1	100	84.962	ENSDNOG00000032911	-	100	84.962	Dasypus_novemcinctus
ENSPNAG00000013707	lsm1	100	85.714	ENSDORG00000028172	Lsm1	100	85.714	Dipodomys_ordii
ENSPNAG00000013707	lsm1	100	57.895	FBgn0261067	LSm1	97	57.895	Drosophila_melanogaster
ENSPNAG00000013707	lsm1	100	84.211	ENSEASG00005016677	LSM1	100	84.211	Equus_asinus_asinus
ENSPNAG00000013707	lsm1	100	84.211	ENSECAG00000010461	LSM1	100	84.211	Equus_caballus
ENSPNAG00000013707	lsm1	72	81.250	ENSEEUG00000015181	LSM1	97	81.250	Erinaceus_europaeus
ENSPNAG00000013707	lsm1	100	75.188	ENSELUG00000023374	lsm1	100	75.188	Esox_lucius
ENSPNAG00000013707	lsm1	100	83.459	ENSELUG00000002322	lsm1	100	83.459	Esox_lucius
ENSPNAG00000013707	lsm1	100	85.714	ENSFCAG00000039335	LSM1	100	85.714	Felis_catus
ENSPNAG00000013707	lsm1	89	85.593	ENSFALG00000006723	LSM1	100	85.593	Ficedula_albicollis
ENSPNAG00000013707	lsm1	100	85.714	ENSFDAG00000007658	LSM1	100	85.714	Fukomys_damarensis
ENSPNAG00000013707	lsm1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSPNAG00000013707	lsm1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSPNAG00000013707	lsm1	100	85.714	ENSGALG00000003245	LSM1	100	85.714	Gallus_gallus
ENSPNAG00000013707	lsm1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSPNAG00000013707	lsm1	100	82.707	ENSGACG00000011763	lsm1	98	82.707	Gasterosteus_aculeatus
ENSPNAG00000013707	lsm1	100	87.970	ENSGAGG00000024065	LSM1	100	87.970	Gopherus_agassizii
ENSPNAG00000013707	lsm1	100	85.714	ENSGGOG00000022658	LSM1	100	85.714	Gorilla_gorilla
ENSPNAG00000013707	lsm1	100	82.707	ENSHBUG00000010897	lsm1	100	82.707	Haplochromis_burtoni
ENSPNAG00000013707	lsm1	100	85.714	ENSHGLG00000005711	LSM1	100	85.714	Heterocephalus_glaber_female
ENSPNAG00000013707	lsm1	100	66.165	ENSHGLG00000017574	-	100	66.165	Heterocephalus_glaber_female
ENSPNAG00000013707	lsm1	100	85.714	ENSHGLG00100017660	LSM1	100	85.714	Heterocephalus_glaber_male
ENSPNAG00000013707	lsm1	100	66.165	ENSHGLG00100012152	-	100	66.165	Heterocephalus_glaber_male
ENSPNAG00000013707	lsm1	100	81.203	ENSHCOG00000017233	lsm1	100	81.203	Hippocampus_comes
ENSPNAG00000013707	lsm1	100	96.241	ENSIPUG00000002312	LSM1	100	96.241	Ictalurus_punctatus
ENSPNAG00000013707	lsm1	58	96.104	ENSSTOG00000026870	LSM1	94	96.104	Ictidomys_tridecemlineatus
ENSPNAG00000013707	lsm1	100	84.211	ENSJJAG00000014605	-	100	84.211	Jaculus_jaculus
ENSPNAG00000013707	lsm1	100	82.707	ENSKMAG00000003016	lsm1	100	82.707	Kryptolebias_marmoratus
ENSPNAG00000013707	lsm1	100	82.707	ENSLBEG00000022352	lsm1	100	82.707	Labrus_bergylta
ENSPNAG00000013707	lsm1	90	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSPNAG00000013707	lsm1	100	85.714	ENSLOCG00000015149	lsm1	100	85.714	Lepisosteus_oculatus
ENSPNAG00000013707	lsm1	100	85.714	ENSLAFG00000003534	LSM1	100	85.714	Loxodonta_africana
ENSPNAG00000013707	lsm1	100	85.714	ENSMFAG00000032661	LSM1	100	85.714	Macaca_fascicularis
ENSPNAG00000013707	lsm1	100	85.714	ENSMLEG00000034535	LSM1	100	85.714	Mandrillus_leucophaeus
ENSPNAG00000013707	lsm1	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSPNAG00000013707	lsm1	100	82.707	ENSMZEG00005010321	lsm1	100	82.707	Maylandia_zebra
ENSPNAG00000013707	lsm1	100	85.714	ENSMGAG00000002125	LSM1	100	85.714	Meleagris_gallopavo
ENSPNAG00000013707	lsm1	100	85.714	ENSMICG00000030726	LSM1	100	85.714	Microcebus_murinus
ENSPNAG00000013707	lsm1	100	84.962	ENSMOCG00000022817	Lsm1	100	84.962	Microtus_ochrogaster
ENSPNAG00000013707	lsm1	100	81.955	ENSMMOG00000015466	lsm1	100	81.955	Mola_mola
ENSPNAG00000013707	lsm1	100	87.218	ENSMODG00000010732	-	100	87.218	Monodelphis_domestica
ENSPNAG00000013707	lsm1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSPNAG00000013707	lsm1	100	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSPNAG00000013707	lsm1	100	83.459	ENSMUSG00000037296	Lsm1	91	94.872	Mus_musculus
ENSPNAG00000013707	lsm1	100	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSPNAG00000013707	lsm1	100	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSPNAG00000013707	lsm1	100	86.466	ENSMPUG00000009883	LSM1	100	86.466	Mustela_putorius_furo
ENSPNAG00000013707	lsm1	100	85.714	ENSMLUG00000003734	LSM1	100	85.714	Myotis_lucifugus
ENSPNAG00000013707	lsm1	100	84.962	ENSNGAG00000003753	Lsm1	100	84.962	Nannospalax_galili
ENSPNAG00000013707	lsm1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSPNAG00000013707	lsm1	100	85.714	ENSNLEG00000029390	LSM1	100	85.714	Nomascus_leucogenys
ENSPNAG00000013707	lsm1	100	87.218	ENSMEUG00000014077	LSM1	100	87.218	Notamacropus_eugenii
ENSPNAG00000013707	lsm1	88	81.197	ENSOPRG00000000333	LSM1	100	81.197	Ochotona_princeps
ENSPNAG00000013707	lsm1	100	85.714	ENSODEG00000004834	LSM1	100	85.714	Octodon_degus
ENSPNAG00000013707	lsm1	100	82.707	ENSONIG00000010782	lsm1	100	82.707	Oreochromis_niloticus
ENSPNAG00000013707	lsm1	100	87.218	ENSOANG00000003256	LSM1	100	87.218	Ornithorhynchus_anatinus
ENSPNAG00000013707	lsm1	100	85.714	ENSOCUG00000015399	LSM1	100	85.714	Oryctolagus_cuniculus
ENSPNAG00000013707	lsm1	100	84.211	ENSORLG00000030288	lsm1	100	84.211	Oryzias_latipes
ENSPNAG00000013707	lsm1	100	85.714	ENSORLG00020006213	-	86	85.714	Oryzias_latipes_hni
ENSPNAG00000013707	lsm1	100	84.211	ENSORLG00020003941	lsm1	100	84.211	Oryzias_latipes_hni
ENSPNAG00000013707	lsm1	100	84.211	ENSORLG00015018350	lsm1	100	84.211	Oryzias_latipes_hsok
ENSPNAG00000013707	lsm1	100	82.707	ENSOMEG00000012454	lsm1	100	82.707	Oryzias_melastigma
ENSPNAG00000013707	lsm1	100	85.714	ENSOGAG00000015161	LSM1	100	85.714	Otolemur_garnettii
ENSPNAG00000013707	lsm1	100	85.714	ENSOARG00000001317	LSM1	100	85.714	Ovis_aries
ENSPNAG00000013707	lsm1	100	85.714	ENSPPAG00000032279	LSM1	100	85.714	Pan_paniscus
ENSPNAG00000013707	lsm1	100	85.714	ENSPPRG00000014172	-	100	85.714	Panthera_pardus
ENSPNAG00000013707	lsm1	100	85.714	ENSPTIG00000010289	LSM1	100	85.714	Panthera_tigris_altaica
ENSPNAG00000013707	lsm1	100	85.714	ENSPTRG00000020169	LSM1	100	85.714	Pan_troglodytes
ENSPNAG00000013707	lsm1	100	85.714	ENSPANG00000008814	LSM1	100	85.714	Papio_anubis
ENSPNAG00000013707	lsm1	100	83.459	ENSPKIG00000001839	lsm1	100	83.459	Paramormyrops_kingsleyae
ENSPNAG00000013707	lsm1	100	79.699	ENSPKIG00000019409	LSM1	99	79.699	Paramormyrops_kingsleyae
ENSPNAG00000013707	lsm1	97	82.171	ENSPSIG00000012563	LSM1	98	82.171	Pelodiscus_sinensis
ENSPNAG00000013707	lsm1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSPNAG00000013707	lsm1	85	74.336	ENSPMAG00000002671	lsm1	100	74.336	Petromyzon_marinus
ENSPNAG00000013707	lsm1	100	85.714	ENSPCIG00000008880	LSM1	100	85.714	Phascolarctos_cinereus
ENSPNAG00000013707	lsm1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSPNAG00000013707	lsm1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSPNAG00000013707	lsm1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSPNAG00000013707	lsm1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSPNAG00000013707	lsm1	100	85.714	ENSPPYG00000018521	LSM1	100	85.714	Pongo_abelii
ENSPNAG00000013707	lsm1	100	85.714	ENSPCOG00000020901	-	100	85.714	Propithecus_coquereli
ENSPNAG00000013707	lsm1	100	85.714	ENSPVAG00000006016	LSM1	100	85.714	Pteropus_vampyrus
ENSPNAG00000013707	lsm1	100	82.707	ENSPNYG00000018067	lsm1	100	82.707	Pundamilia_nyererei
ENSPNAG00000013707	lsm1	100	84.211	ENSRNOG00000015375	Lsm1	100	84.211	Rattus_norvegicus
ENSPNAG00000013707	lsm1	100	85.714	ENSRBIG00000027449	LSM1	100	85.714	Rhinopithecus_bieti
ENSPNAG00000013707	lsm1	100	85.714	ENSRROG00000036074	LSM1	100	85.714	Rhinopithecus_roxellana
ENSPNAG00000013707	lsm1	83	47.009	YJL124C	LSM1	67	47.009	Saccharomyces_cerevisiae
ENSPNAG00000013707	lsm1	100	87.218	ENSSHAG00000017260	LSM1	100	87.218	Sarcophilus_harrisii
ENSPNAG00000013707	lsm1	100	82.707	ENSSFOG00015019528	lsm1	100	82.707	Scleropages_formosus
ENSPNAG00000013707	lsm1	100	82.707	ENSSMAG00000004930	lsm1	100	82.707	Scophthalmus_maximus
ENSPNAG00000013707	lsm1	100	81.203	ENSSDUG00000021823	lsm1	100	81.203	Seriola_dumerili
ENSPNAG00000013707	lsm1	100	81.203	ENSSLDG00000012154	lsm1	100	81.203	Seriola_lalandi_dorsalis
ENSPNAG00000013707	lsm1	100	87.970	ENSSPUG00000014878	LSM1	100	87.970	Sphenodon_punctatus
ENSPNAG00000013707	lsm1	100	81.955	ENSSPAG00000020548	lsm1	100	81.955	Stegastes_partitus
ENSPNAG00000013707	lsm1	100	85.714	ENSSSCG00000039058	LSM1	100	85.714	Sus_scrofa
ENSPNAG00000013707	lsm1	100	87.218	ENSTGUG00000004793	LSM1	100	87.218	Taeniopygia_guttata
ENSPNAG00000013707	lsm1	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSPNAG00000013707	lsm1	100	83.459	ENSTNIG00000004055	lsm1	100	83.459	Tetraodon_nigroviridis
ENSPNAG00000013707	lsm1	88	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSPNAG00000013707	lsm1	100	85.714	ENSTTRG00000004482	LSM1	100	85.714	Tursiops_truncatus
ENSPNAG00000013707	lsm1	100	85.714	ENSUAMG00000004103	LSM1	100	85.714	Ursus_americanus
ENSPNAG00000013707	lsm1	100	85.714	ENSUMAG00000009132	LSM1	100	85.714	Ursus_maritimus
ENSPNAG00000013707	lsm1	58	94.805	ENSVPAG00000011593	LSM1	100	94.805	Vicugna_pacos
ENSPNAG00000013707	lsm1	100	85.714	ENSVVUG00000020191	LSM1	100	85.714	Vulpes_vulpes
ENSPNAG00000013707	lsm1	61	67.901	ENSVVUG00000014880	-	86	67.901	Vulpes_vulpes
ENSPNAG00000013707	lsm1	100	82.482	ENSXETG00000009004	lsm1	100	82.482	Xenopus_tropicalis
ENSPNAG00000013707	lsm1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSPNAG00000013707	lsm1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus