EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000013952 (Gene tree)
Gene ID: 108425729
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 71830 bases
Position: chrKV575320.1:457345-529174
Accession: 108425729
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000008297	R3H	PF01424.22	1.7e-12	1	1
ENSPNAP00000008306	R3H	PF01424.22	1.9e-12	1	1
ENSPNAP00000028311	R3H	PF01424.22	1.9e-12	1	1
ENSPNAP00000008335	R3H	PF01424.22	2e-12	1	1
ENSPNAP00000028331	R3H	PF01424.22	2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000000382	-	5206	XM_017694622	ENSPNAP00000008297	1043 (aa)	XP_017550111	UPI000814B36B
ENSPNAT00000000270	-	5398	XM_017694614	ENSPNAP00000028331	1137 (aa)	XP_017550103	UPI000814469C
ENSPNAT00000000360	-	5359	XM_017694621	ENSPNAP00000008306	1094 (aa)	XP_017550110	UPI0008145DD4
ENSPNAT00000000310	-	5488	XM_017694615	ENSPNAP00000008335	1137 (aa)	XP_017550104	UPI000814469C
ENSPNAT00000000326	-	5404	XM_017694619	ENSPNAP00000028311	1109 (aa)	XP_017550108	UPI000814647D

Gene Model

Click here to download ENSPNAG00000013952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000013952's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000013952	r3hdm1	53	55.600	ENSPNAG00000004162	arpp21	90	46.961
ENSPNAG00000013952	r3hdm1	85	77.778	ENSPNAG00000005436	R3HDM1	99	77.705
ENSPNAG00000013952	r3hdm1	96	46.929	ENSPNAG00000017473	r3hdm2	89	58.871

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000013952	r3hdm1	95	70.541	ENSG00000048991	R3HDM1	95	79.710	Homo_sapiens
ENSPNAG00000013952	r3hdm1	78	73.529	ENSAPOG00000020850	r3hdm1	83	73.529	Acanthochromis_polyacanthus
ENSPNAG00000013952	r3hdm1	100	63.466	ENSAMEG00000014886	R3HDM1	93	63.551	Ailuropoda_melanoleuca
ENSPNAG00000013952	r3hdm1	83	67.460	ENSAOCG00000005192	r3hdm1	87	67.460	Amphiprion_ocellaris
ENSPNAG00000013952	r3hdm1	77	73.841	ENSAPEG00000016108	r3hdm1	83	73.841	Amphiprion_percula
ENSPNAG00000013952	r3hdm1	77	73.203	ENSATEG00000000232	r3hdm1	86	73.203	Anabas_testudineus
ENSPNAG00000013952	r3hdm1	100	65.493	ENSAPLG00000015231	R3HDM1	100	57.821	Anas_platyrhynchos
ENSPNAG00000013952	r3hdm1	100	63.380	ENSACAG00000001676	R3HDM1	93	63.466	Anolis_carolinensis
ENSPNAG00000013952	r3hdm1	95	70.811	ENSANAG00000035334	R3HDM1	94	74.522	Aotus_nancymaae
ENSPNAG00000013952	r3hdm1	84	51.429	ENSACLG00000027282	r3hdm1	86	71.203	Astatotilapia_calliptera
ENSPNAG00000013952	r3hdm1	51	55.691	ENSAMXG00000020587	arpp21	84	55.691	Astyanax_mexicanus
ENSPNAG00000013952	r3hdm1	100	88.973	ENSAMXG00000003536	r3hdm1	100	90.330	Astyanax_mexicanus
ENSPNAG00000013952	r3hdm1	100	69.031	ENSAMXG00000012861	R3HDM1	91	79.430	Astyanax_mexicanus
ENSPNAG00000013952	r3hdm1	100	62.676	ENSBTAG00000013302	R3HDM1	100	56.102	Bos_taurus
ENSPNAG00000013952	r3hdm1	89	74.603	ENSCJAG00000011718	R3HDM1	94	74.522	Callithrix_jacchus
ENSPNAG00000013952	r3hdm1	100	63.466	ENSCAFG00000005075	R3HDM1	93	63.551	Canis_familiaris
ENSPNAG00000013952	r3hdm1	100	63.466	ENSCAFG00020016119	R3HDM1	93	63.551	Canis_lupus_dingo
ENSPNAG00000013952	r3hdm1	100	62.911	ENSCHIG00000020851	R3HDM1	100	56.643	Capra_hircus
ENSPNAG00000013952	r3hdm1	93	69.101	ENSCPOG00000012784	R3HDM1	88	69.188	Cavia_porcellus
ENSPNAG00000013952	r3hdm1	95	70.811	ENSCCAG00000027199	R3HDM1	94	74.522	Cebus_capucinus
ENSPNAG00000013952	r3hdm1	95	70.811	ENSCATG00000023642	R3HDM1	94	74.841	Cercocebus_atys
ENSPNAG00000013952	r3hdm1	93	71.709	ENSCLAG00000007962	R3HDM1	88	71.788	Chinchilla_lanigera
ENSPNAG00000013952	r3hdm1	95	57.422	ENSCSAG00000016356	R3HDM1	89	70.350	Chlorocebus_sabaeus
ENSPNAG00000013952	r3hdm1	76	75.758	ENSCHOG00000013638	R3HDM1	81	67.153	Choloepus_hoffmanni
ENSPNAG00000013952	r3hdm1	85	77.491	ENSCPBG00000009645	R3HDM1	99	77.491	Chrysemys_picta_bellii
ENSPNAG00000013952	r3hdm1	95	69.919	ENSCANG00000034748	R3HDM1	94	73.802	Colobus_angolensis_palliatus
ENSPNAG00000013952	r3hdm1	99	62.998	ENSCGRG00001012357	R3hdm1	90	63.084	Cricetulus_griseus_chok1gshd
ENSPNAG00000013952	r3hdm1	100	62.998	ENSCGRG00000012080	R3hdm1	93	63.084	Cricetulus_griseus_crigri
ENSPNAG00000013952	r3hdm1	84	64.021	ENSCSEG00000008944	r3hdm1	83	70.288	Cynoglossus_semilaevis
ENSPNAG00000013952	r3hdm1	77	73.841	ENSCVAG00000007582	r3hdm1	83	72.347	Cyprinodon_variegatus
ENSPNAG00000013952	r3hdm1	67	36.236	ENSDARG00000061081	arpp21	91	46.667	Danio_rerio
ENSPNAG00000013952	r3hdm1	100	59.674	ENSDNOG00000000771	R3HDM1	100	54.276	Dasypus_novemcinctus
ENSPNAG00000013952	r3hdm1	84	72.107	ENSETEG00000013606	R3HDM1	85	60.444	Echinops_telfairi
ENSPNAG00000013952	r3hdm1	58	40.652	ENSEBUG00000014746	arpp21	96	41.242	Eptatretus_burgeri
ENSPNAG00000013952	r3hdm1	89	74.204	ENSEASG00005007392	R3HDM1	87	74.286	Equus_asinus_asinus
ENSPNAG00000013952	r3hdm1	92	73.256	ENSECAG00000019114	R3HDM1	88	73.333	Equus_caballus
ENSPNAG00000013952	r3hdm1	77	60.730	ENSEEUG00000012589	R3HDM1	68	60.652	Erinaceus_europaeus
ENSPNAG00000013952	r3hdm1	92	71.176	ENSELUG00000004909	R3HDM1	90	70.930	Esox_lucius
ENSPNAG00000013952	r3hdm1	61	85.441	ENSELUG00000014413	r3hdm1	87	83.088	Esox_lucius
ENSPNAG00000013952	r3hdm1	89	74.603	ENSFCAG00000027113	R3HDM1	91	72.981	Felis_catus
ENSPNAG00000013952	r3hdm1	92	64.085	ENSFALG00000013731	R3HDM1	88	57.454	Ficedula_albicollis
ENSPNAG00000013952	r3hdm1	93	72.269	ENSFDAG00000016478	R3HDM1	80	75.424	Fukomys_damarensis
ENSPNAG00000013952	r3hdm1	89	62.295	ENSFHEG00000018713	r3hdm1	85	69.916	Fundulus_heteroclitus
ENSPNAG00000013952	r3hdm1	58	84.615	ENSGMOG00000006042	-	79	66.008	Gadus_morhua
ENSPNAG00000013952	r3hdm1	85	71.613	ENSGALG00000012246	R3HDM1	99	71.521	Gallus_gallus
ENSPNAG00000013952	r3hdm1	77	73.927	ENSGAFG00000006203	r3hdm1	82	73.927	Gambusia_affinis
ENSPNAG00000013952	r3hdm1	85	70.349	ENSGACG00000014925	r3hdm1	95	70.349	Gasterosteus_aculeatus
ENSPNAG00000013952	r3hdm1	95	70.350	ENSGAGG00000007840	R3HDM1	93	70.350	Gopherus_agassizii
ENSPNAG00000013952	r3hdm1	95	58.295	ENSGGOG00000008156	R3HDM1	94	74.522	Gorilla_gorilla
ENSPNAG00000013952	r3hdm1	94	71.274	ENSHGLG00000015718	R3HDM1	89	71.351	Heterocephalus_glaber_female
ENSPNAG00000013952	r3hdm1	92	45.245	ENSHGLG00100015374	-	95	46.070	Heterocephalus_glaber_male
ENSPNAG00000013952	r3hdm1	100	63.466	ENSHGLG00100003184	-	89	71.351	Heterocephalus_glaber_male
ENSPNAG00000013952	r3hdm1	77	69.935	ENSHCOG00000013366	r3hdm1	84	69.304	Hippocampus_comes
ENSPNAG00000013952	r3hdm1	57	40.563	ENSIPUG00000020552	arpp21	85	44.444	Ictalurus_punctatus
ENSPNAG00000013952	r3hdm1	82	77.326	ENSIPUG00000001676	R3HDM1	91	77.259	Ictalurus_punctatus
ENSPNAG00000013952	r3hdm1	99	74.472	ENSIPUG00000013629	r3hdm1	99	79.045	Ictalurus_punctatus
ENSPNAG00000013952	r3hdm1	100	63.232	ENSSTOG00000007572	R3HDM1	89	70.620	Ictidomys_tridecemlineatus
ENSPNAG00000013952	r3hdm1	93	73.371	ENSLACG00000005334	R3HDM1	92	73.864	Latimeria_chalumnae
ENSPNAG00000013952	r3hdm1	95	72.900	ENSLOCG00000001641	r3hdm1	100	59.469	Lepisosteus_oculatus
ENSPNAG00000013952	r3hdm1	100	62.911	ENSLAFG00000009065	R3HDM1	89	70.270	Loxodonta_africana
ENSPNAG00000013952	r3hdm1	95	58.020	ENSMFAG00000030331	R3HDM1	94	74.522	Macaca_fascicularis
ENSPNAG00000013952	r3hdm1	95	57.837	ENSMMUG00000009844	R3HDM1	94	74.522	Macaca_mulatta
ENSPNAG00000013952	r3hdm1	95	58.020	ENSMNEG00000027793	R3HDM1	94	74.522	Macaca_nemestrina
ENSPNAG00000013952	r3hdm1	95	58.020	ENSMLEG00000043189	R3HDM1	94	74.522	Mandrillus_leucophaeus
ENSPNAG00000013952	r3hdm1	84	67.553	ENSMAMG00000004532	r3hdm1	83	72.930	Mastacembelus_armatus
ENSPNAG00000013952	r3hdm1	81	70.774	ENSMZEG00005003157	r3hdm1	86	72.876	Maylandia_zebra
ENSPNAG00000013952	r3hdm1	99	64.455	ENSMGAG00000012461	R3HDM1	100	57.256	Meleagris_gallopavo
ENSPNAG00000013952	r3hdm1	100	63.232	ENSMAUG00000010315	R3hdm1	93	63.318	Mesocricetus_auratus
ENSPNAG00000013952	r3hdm1	89	74.603	ENSMICG00000005900	-	88	74.684	Microcebus_murinus
ENSPNAG00000013952	r3hdm1	85	57.826	ENSMICG00000042655	-	94	57.935	Microcebus_murinus
ENSPNAG00000013952	r3hdm1	90	61.416	ENSMODG00000000923	R3HDM1	93	54.938	Monodelphis_domestica
ENSPNAG00000013952	r3hdm1	94	69.355	ENSMALG00000009000	r3hdm1	89	69.355	Monopterus_albus
ENSPNAG00000013952	r3hdm1	100	63.023	MGP_CAROLIEiJ_G0014543	R3hdm1	93	63.109	Mus_caroli
ENSPNAG00000013952	r3hdm1	100	63.023	ENSMUSG00000056211	R3hdm1	93	63.109	Mus_musculus
ENSPNAG00000013952	r3hdm1	100	63.023	MGP_PahariEiJ_G0027779	R3hdm1	93	63.109	Mus_pahari
ENSPNAG00000013952	r3hdm1	100	63.023	MGP_SPRETEiJ_G0015350	R3hdm1	93	63.109	Mus_spretus
ENSPNAG00000013952	r3hdm1	100	63.466	ENSMPUG00000002412	R3HDM1	93	63.551	Mustela_putorius_furo
ENSPNAG00000013952	r3hdm1	100	63.529	ENSMLUG00000013824	R3HDM1	93	63.466	Myotis_lucifugus
ENSPNAG00000013952	r3hdm1	95	58.387	ENSNLEG00000008622	R3HDM1	94	74.522	Nomascus_leucogenys
ENSPNAG00000013952	r3hdm1	90	47.933	ENSMEUG00000011784	R3HDM1	90	58.904	Notamacropus_eugenii
ENSPNAG00000013952	r3hdm1	93	72.269	ENSODEG00000008607	R3HDM1	88	72.346	Octodon_degus
ENSPNAG00000013952	r3hdm1	93	50.450	ENSONIG00000012017	r3hdm1	99	49.508	Oreochromis_niloticus
ENSPNAG00000013952	r3hdm1	100	62.676	ENSOANG00000007987	R3HDM1	88	69.189	Ornithorhynchus_anatinus
ENSPNAG00000013952	r3hdm1	89	62.471	ENSOCUG00000017366	R3HDM1	95	56.526	Oryctolagus_cuniculus
ENSPNAG00000013952	r3hdm1	82	69.318	ENSORLG00000004297	r3hdm1	83	72.368	Oryzias_latipes
ENSPNAG00000013952	r3hdm1	82	69.318	ENSORLG00015017355	r3hdm1	84	69.628	Oryzias_latipes_hsok
ENSPNAG00000013952	r3hdm1	100	64.169	ENSOGAG00000003136	R3HDM1	93	64.252	Otolemur_garnettii
ENSPNAG00000013952	r3hdm1	100	62.911	ENSOARG00000010788	R3HDM1	100	56.780	Ovis_aries
ENSPNAG00000013952	r3hdm1	95	58.371	ENSPPAG00000027858	R3HDM1	94	74.522	Pan_paniscus
ENSPNAG00000013952	r3hdm1	89	74.286	ENSPPRG00000002626	R3HDM1	94	74.204	Panthera_pardus
ENSPNAG00000013952	r3hdm1	89	74.603	ENSPTIG00000016581	R3HDM1	94	74.522	Panthera_tigris_altaica
ENSPNAG00000013952	r3hdm1	95	58.280	ENSPTRG00000012494	R3HDM1	94	74.522	Pan_troglodytes
ENSPNAG00000013952	r3hdm1	95	58.020	ENSPANG00000026448	R3HDM1	94	74.522	Papio_anubis
ENSPNAG00000013952	r3hdm1	92	78.635	ENSPKIG00000004328	r3hdm1	92	64.257	Paramormyrops_kingsleyae
ENSPNAG00000013952	r3hdm1	94	71.196	ENSPSIG00000012915	R3HDM1	88	71.274	Pelodiscus_sinensis
ENSPNAG00000013952	r3hdm1	100	62.998	ENSPEMG00000015187	R3hdm1	93	63.084	Peromyscus_maniculatus_bairdii
ENSPNAG00000013952	r3hdm1	85	59.615	ENSPMAG00000003369	-	92	59.783	Petromyzon_marinus
ENSPNAG00000013952	r3hdm1	100	63.170	ENSPCIG00000002491	R3HDM1	88	71.472	Phascolarctos_cinereus
ENSPNAG00000013952	r3hdm1	89	61.737	ENSPFOG00000015036	r3hdm1	84	70.402	Poecilia_formosa
ENSPNAG00000013952	r3hdm1	77	73.179	ENSPLAG00000018042	r3hdm1	82	73.179	Poecilia_latipinna
ENSPNAG00000013952	r3hdm1	77	73.179	ENSPMEG00000023947	r3hdm1	82	73.179	Poecilia_mexicana
ENSPNAG00000013952	r3hdm1	89	61.827	ENSPREG00000007902	r3hdm1	82	73.267	Poecilia_reticulata
ENSPNAG00000013952	r3hdm1	95	67.925	ENSPPYG00000012815	R3HDM1	89	69.086	Pongo_abelii
ENSPNAG00000013952	r3hdm1	84	74.043	ENSPCAG00000006208	R3HDM1	77	68.601	Procavia_capensis
ENSPNAG00000013952	r3hdm1	85	77.737	ENSPCOG00000012698	R3HDM1	86	77.818	Propithecus_coquereli
ENSPNAG00000013952	r3hdm1	100	57.377	ENSPVAG00000006098	R3HDM1	92	53.689	Pteropus_vampyrus
ENSPNAG00000013952	r3hdm1	100	63.023	ENSRNOG00000004099	R3hdm1	93	63.109	Rattus_norvegicus
ENSPNAG00000013952	r3hdm1	95	56.868	ENSRBIG00000033317	R3HDM1	95	77.860	Rhinopithecus_bieti
ENSPNAG00000013952	r3hdm1	87	70.190	ENSRROG00000034534	R3HDM1	90	74.121	Rhinopithecus_roxellana
ENSPNAG00000013952	r3hdm1	95	70.811	ENSSBOG00000020389	R3HDM1	94	74.522	Saimiri_boliviensis_boliviensis
ENSPNAG00000013952	r3hdm1	100	63.318	ENSSHAG00000016999	R3HDM1	88	71.472	Sarcophilus_harrisii
ENSPNAG00000013952	r3hdm1	92	79.351	ENSSFOG00015014134	r3hdm1	94	79.420	Scleropages_formosus
ENSPNAG00000013952	r3hdm1	100	65.340	ENSSFOG00015019851	-	100	59.079	Scleropages_formosus
ENSPNAG00000013952	r3hdm1	92	50.182	ENSSMAG00000001669	r3hdm1	87	71.246	Scophthalmus_maximus
ENSPNAG00000013952	r3hdm1	83	51.700	ENSSDUG00000010749	r3hdm1	98	50.246	Seriola_dumerili
ENSPNAG00000013952	r3hdm1	92	51.601	ENSSLDG00000004499	r3hdm1	97	49.866	Seriola_lalandi_dorsalis
ENSPNAG00000013952	r3hdm1	63	60.837	ENSSARG00000000352	-	60	60.837	Sorex_araneus
ENSPNAG00000013952	r3hdm1	100	57.180	ENSSPUG00000004167	R3HDM1	100	57.206	Sphenodon_punctatus
ENSPNAG00000013952	r3hdm1	83	68.011	ENSSPAG00000004648	r3hdm1	83	73.856	Stegastes_partitus
ENSPNAG00000013952	r3hdm1	92	72.965	ENSSSCG00000015692	R3HDM1	94	70.645	Sus_scrofa
ENSPNAG00000013952	r3hdm1	100	63.850	ENSTGUG00000011750	R3HDM1	92	63.934	Taeniopygia_guttata
ENSPNAG00000013952	r3hdm1	77	71.053	ENSTRUG00000011654	r3hdm1	83	70.064	Takifugu_rubripes
ENSPNAG00000013952	r3hdm1	84	64.644	ENSTNIG00000010362	r3hdm1	86	64.175	Tetraodon_nigroviridis
ENSPNAG00000013952	r3hdm1	100	58.782	ENSTTRG00000003935	R3HDM1	100	51.836	Tursiops_truncatus
ENSPNAG00000013952	r3hdm1	58	74.522	ENSUAMG00000024806	R3HDM1	85	74.121	Ursus_americanus
ENSPNAG00000013952	r3hdm1	89	74.522	ENSUMAG00000005552	R3HDM1	94	74.522	Ursus_maritimus
ENSPNAG00000013952	r3hdm1	85	74.088	ENSVPAG00000007333	R3HDM1	76	74.182	Vicugna_pacos
ENSPNAG00000013952	r3hdm1	89	74.522	ENSVVUG00000006457	R3HDM1	94	74.522	Vulpes_vulpes
ENSPNAG00000013952	r3hdm1	90	53.379	ENSXETG00000019330	r3hdm1	96	53.791	Xenopus_tropicalis
ENSPNAG00000013952	r3hdm1	61	73.115	ENSXCOG00000017448	r3hdm1	81	71.429	Xiphophorus_couchianus
ENSPNAG00000013952	r3hdm1	81	70.774	ENSXMAG00000007885	r3hdm1	84	70.774	Xiphophorus_maculatus