EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000014007 (Gene tree)
Gene ID: 108426214
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 9863 bases
Position: chrKV575325.1:1837502-1847364
Accession: 108426214
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000008270	TUDOR	PF00567.24	5e-06	1	1
ENSPNAP00000008270	SMN	PF06003.12	1.5e-120	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000000440	-	957	XM_017695536	ENSPNAP00000008270	318 (aa)	XP_017551025	-

Gene Model

Click here to download ENSPNAG00000014007's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000014007's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000014007	smn1	82	49.821	ENSG00000172062	SMN1	93	51.331	Homo_sapiens
ENSPNAG00000014007	smn1	82	49.821	ENSG00000205571	SMN2	89	65.854	Homo_sapiens
ENSPNAG00000014007	smn1	87	66.434	ENSAPOG00000011324	smn1	100	65.035	Acanthochromis_polyacanthus
ENSPNAG00000014007	smn1	82	49.097	ENSAMEG00000003316	-	89	48.905	Ailuropoda_melanoleuca
ENSPNAG00000014007	smn1	53	64.118	ENSACIG00000007598	smn1	93	65.680	Amphilophus_citrinellus
ENSPNAG00000014007	smn1	81	64.015	ENSACIG00000019772	-	99	60.985	Amphilophus_citrinellus
ENSPNAG00000014007	smn1	87	65.734	ENSAOCG00000024444	smn1	100	65.035	Amphiprion_ocellaris
ENSPNAG00000014007	smn1	87	66.434	ENSAPEG00000016504	smn1	100	65.035	Amphiprion_percula
ENSPNAG00000014007	smn1	83	65.441	ENSATEG00000002182	smn1	82	63.736	Anabas_testudineus
ENSPNAG00000014007	smn1	61	52.261	ENSAPLG00000010912	-	98	50.739	Anas_platyrhynchos
ENSPNAG00000014007	smn1	85	54.545	ENSACAG00000010017	-	95	52.500	Anolis_carolinensis
ENSPNAG00000014007	smn1	72	43.162	ENSANAG00000032133	-	92	48.201	Aotus_nancymaae
ENSPNAG00000014007	smn1	86	59.075	ENSACLG00000007308	smn1	96	64.539	Astatotilapia_calliptera
ENSPNAG00000014007	smn1	87	89.568	ENSAMXG00000013884	smn1	100	89.568	Astyanax_mexicanus
ENSPNAG00000014007	smn1	83	49.643	ENSBTAG00000005743	SMN2	93	46.097	Bos_taurus
ENSPNAG00000014007	smn1	82	47.547	ENSCJAG00000016290	-	92	51.111	Callithrix_jacchus
ENSPNAG00000014007	smn1	83	48.754	ENSCAFG00000007812	SMN	93	48.551	Canis_familiaris
ENSPNAG00000014007	smn1	83	48.929	ENSCAFG00020019229	-	87	50.365	Canis_lupus_dingo
ENSPNAG00000014007	smn1	83	49.291	ENSCHIG00000015559	-	91	45.926	Capra_hircus
ENSPNAG00000014007	smn1	82	49.640	ENSTSYG00000012058	-	93	50.187	Carlito_syrichta
ENSPNAG00000014007	smn1	63	44.976	ENSCAPG00000011021	-	84	42.051	Cavia_aperea
ENSPNAG00000014007	smn1	85	48.288	ENSCPOG00000012328	-	95	47.703	Cavia_porcellus
ENSPNAG00000014007	smn1	85	49.129	ENSCPOG00000036973	-	94	48.043	Cavia_porcellus
ENSPNAG00000014007	smn1	82	50.182	ENSCCAG00000018127	-	91	50.000	Cebus_capucinus
ENSPNAG00000014007	smn1	82	49.104	ENSCATG00000037002	-	93	50.382	Cercocebus_atys
ENSPNAG00000014007	smn1	83	49.451	ENSCLAG00000000284	-	93	48.214	Chinchilla_lanigera
ENSPNAG00000014007	smn1	84	49.123	ENSCSAG00000015688	-	91	51.301	Chlorocebus_sabaeus
ENSPNAG00000014007	smn1	87	52.632	ENSCPBG00000010968	-	99	50.545	Chrysemys_picta_bellii
ENSPNAG00000014007	smn1	82	50.181	ENSCANG00000038242	-	94	50.187	Colobus_angolensis_palliatus
ENSPNAG00000014007	smn1	81	47.445	ENSCANG00000033324	-	89	47.059	Colobus_angolensis_palliatus
ENSPNAG00000014007	smn1	86	50.352	ENSCGRG00001017959	-	97	47.931	Cricetulus_griseus_chok1gshd
ENSPNAG00000014007	smn1	61	44.175	ENSCGRG00001016998	-	78	43.478	Cricetulus_griseus_chok1gshd
ENSPNAG00000014007	smn1	86	50.352	ENSCGRG00000007698	Smn1	97	47.931	Cricetulus_griseus_crigri
ENSPNAG00000014007	smn1	85	54.577	ENSCSEG00000015227	smn1	99	56.338	Cynoglossus_semilaevis
ENSPNAG00000014007	smn1	87	64.706	ENSCVAG00000007498	smn1	100	62.937	Cyprinodon_variegatus
ENSPNAG00000014007	smn1	87	73.310	ENSDARG00000018494	smn1	100	73.310	Danio_rerio
ENSPNAG00000014007	smn1	72	44.262	ENSDNOG00000007283	-	83	45.098	Dasypus_novemcinctus
ENSPNAG00000014007	smn1	81	43.295	ENSDORG00000007082	Smn1	91	43.243	Dipodomys_ordii
ENSPNAG00000014007	smn1	87	41.554	ENSEBUG00000011902	smn1	96	39.726	Eptatretus_burgeri
ENSPNAG00000014007	smn1	77	45.594	ENSEASG00005018000	-	89	45.211	Equus_asinus_asinus
ENSPNAG00000014007	smn1	83	48.921	ENSECAG00000015215	-	93	48.736	Equus_caballus
ENSPNAG00000014007	smn1	77	46.875	ENSEEUG00000015777	-	100	48.413	Erinaceus_europaeus
ENSPNAG00000014007	smn1	86	66.182	ENSELUG00000018067	smn1	98	66.182	Esox_lucius
ENSPNAG00000014007	smn1	82	51.852	ENSFCAG00000028292	SMN	93	49.638	Felis_catus
ENSPNAG00000014007	smn1	82	54.753	ENSFALG00000012320	-	94	54.753	Ficedula_albicollis
ENSPNAG00000014007	smn1	83	49.648	ENSFDAG00000017683	-	93	47.703	Fukomys_damarensis
ENSPNAG00000014007	smn1	85	61.232	ENSFHEG00000018508	smn1	100	61.957	Fundulus_heteroclitus
ENSPNAG00000014007	smn1	88	61.053	ENSGMOG00000017279	smn1	99	61.754	Gadus_morhua
ENSPNAG00000014007	smn1	84	55.515	ENSGALG00000002430	SMN	97	54.212	Gallus_gallus
ENSPNAG00000014007	smn1	87	66.667	ENSGAFG00000009501	smn1	100	64.211	Gambusia_affinis
ENSPNAG00000014007	smn1	87	64.912	ENSGACG00000010584	smn1	97	63.860	Gasterosteus_aculeatus
ENSPNAG00000014007	smn1	86	53.623	ENSGAGG00000011374	-	97	51.943	Gopherus_agassizii
ENSPNAG00000014007	smn1	86	38.647	ENSGAGG00000013639	-	94	37.383	Gopherus_agassizii
ENSPNAG00000014007	smn1	80	48.438	ENSGGOG00000003872	-	93	48.659	Gorilla_gorilla
ENSPNAG00000014007	smn1	50	54.321	ENSGGOG00000026704	-	85	51.913	Gorilla_gorilla
ENSPNAG00000014007	smn1	87	62.143	ENSHBUG00000013987	smn1	100	67.616	Haplochromis_burtoni
ENSPNAG00000014007	smn1	83	47.312	ENSHGLG00000001905	-	94	45.296	Heterocephalus_glaber_female
ENSPNAG00000014007	smn1	83	49.455	ENSHGLG00000001018	-	93	47.670	Heterocephalus_glaber_female
ENSPNAG00000014007	smn1	81	47.253	ENSHGLG00100018676	-	96	45.196	Heterocephalus_glaber_male
ENSPNAG00000014007	smn1	83	49.455	ENSHGLG00100011252	-	93	47.670	Heterocephalus_glaber_male
ENSPNAG00000014007	smn1	82	63.396	ENSHCOG00000017136	smn1	89	66.038	Hippocampus_comes
ENSPNAG00000014007	smn1	97	75.241	ENSIPUG00000012580	smn1	97	75.241	Ictalurus_punctatus
ENSPNAG00000014007	smn1	80	48.327	ENSSTOG00000012288	-	94	47.126	Ictidomys_tridecemlineatus
ENSPNAG00000014007	smn1	87	63.287	ENSKMAG00000007239	smn1	100	60.339	Kryptolebias_marmoratus
ENSPNAG00000014007	smn1	87	63.636	ENSLBEG00000022550	smn1	100	63.986	Labrus_bergylta
ENSPNAG00000014007	smn1	86	38.832	ENSLACG00000009808	-	95	40.000	Latimeria_chalumnae
ENSPNAG00000014007	smn1	87	63.251	ENSLOCG00000011339	smn1	100	63.251	Lepisosteus_oculatus
ENSPNAG00000014007	smn1	82	49.446	ENSLAFG00000003425	-	89	48.561	Loxodonta_africana
ENSPNAG00000014007	smn1	88	46.128	ENSMFAG00000031523	SMN1	95	50.382	Macaca_fascicularis
ENSPNAG00000014007	smn1	82	46.429	ENSMFAG00000008812	-	91	47.955	Macaca_fascicularis
ENSPNAG00000014007	smn1	82	46.429	ENSMMUG00000030594	-	91	47.955	Macaca_mulatta
ENSPNAG00000014007	smn1	82	49.821	ENSMMUG00000020214	SMN1	93	51.145	Macaca_mulatta
ENSPNAG00000014007	smn1	84	49.123	ENSMNEG00000035094	-	93	51.145	Macaca_nemestrina
ENSPNAG00000014007	smn1	68	37.447	ENSMNEG00000036423	-	70	43.182	Macaca_nemestrina
ENSPNAG00000014007	smn1	83	49.466	ENSMLEG00000041902	-	93	51.145	Mandrillus_leucophaeus
ENSPNAG00000014007	smn1	87	65.972	ENSMAMG00000011034	smn1	100	64.236	Mastacembelus_armatus
ENSPNAG00000014007	smn1	87	62.633	ENSMZEG00005013634	smn1	100	68.085	Maylandia_zebra
ENSPNAG00000014007	smn1	62	51.741	ENSMGAG00000008889	-	96	50.754	Meleagris_gallopavo
ENSPNAG00000014007	smn1	86	48.239	ENSMAUG00000010262	Smn1	97	47.751	Mesocricetus_auratus
ENSPNAG00000014007	smn1	86	49.823	ENSMOCG00000017833	Smn1	97	48.780	Microtus_ochrogaster
ENSPNAG00000014007	smn1	85	58.909	ENSMMOG00000005504	smn1	97	62.731	Mola_mola
ENSPNAG00000014007	smn1	82	51.301	ENSMODG00000001436	-	92	51.661	Monodelphis_domestica
ENSPNAG00000014007	smn1	87	65.744	ENSMALG00000008025	smn1	100	66.207	Monopterus_albus
ENSPNAG00000014007	smn1	84	49.648	MGP_CAROLIEiJ_G0018836	Smn1	94	51.264	Mus_caroli
ENSPNAG00000014007	smn1	82	50.000	ENSMUSG00000021645	Smn1	93	51.661	Mus_musculus
ENSPNAG00000014007	smn1	83	50.730	MGP_PahariEiJ_G0015911	Smn1	93	50.554	Mus_pahari
ENSPNAG00000014007	smn1	84	49.648	MGP_SPRETEiJ_G0019718	Smn1	94	51.264	Mus_spretus
ENSPNAG00000014007	smn1	81	48.905	ENSMPUG00000014470	-	94	47.778	Mustela_putorius_furo
ENSPNAG00000014007	smn1	82	48.252	ENSMLUG00000010603	-	95	47.297	Myotis_lucifugus
ENSPNAG00000014007	smn1	89	47.712	ENSNGAG00000019833	Smn1	99	48.464	Nannospalax_galili
ENSPNAG00000014007	smn1	87	62.324	ENSNBRG00000023000	smn1	100	66.316	Neolamprologus_brichardi
ENSPNAG00000014007	smn1	82	49.643	ENSNLEG00000004454	-	92	51.724	Nomascus_leucogenys
ENSPNAG00000014007	smn1	58	46.939	ENSMEUG00000011393	-	85	50.000	Notamacropus_eugenii
ENSPNAG00000014007	smn1	77	49.618	ENSOPRG00000002015	-	100	50.781	Ochotona_princeps
ENSPNAG00000014007	smn1	80	48.855	ENSODEG00000015976	-	92	48.679	Octodon_degus
ENSPNAG00000014007	smn1	87	63.158	ENSONIG00000011799	smn1	100	67.368	Oreochromis_niloticus
ENSPNAG00000014007	smn1	83	51.429	ENSOANG00000001626	-	95	51.986	Ornithorhynchus_anatinus
ENSPNAG00000014007	smn1	86	49.123	ENSOCUG00000026649	-	99	46.254	Oryctolagus_cuniculus
ENSPNAG00000014007	smn1	72	43.568	ENSOCUG00000025183	-	75	44.019	Oryctolagus_cuniculus
ENSPNAG00000014007	smn1	83	50.735	ENSOCUG00000017097	-	92	49.097	Oryctolagus_cuniculus
ENSPNAG00000014007	smn1	87	58.478	ENSORLG00000010552	smn1	100	65.263	Oryzias_latipes
ENSPNAG00000014007	smn1	87	62.230	ENSORLG00020007936	smn1	100	61.053	Oryzias_latipes_hni
ENSPNAG00000014007	smn1	87	60.563	ENSORLG00015022425	smn1	100	64.561	Oryzias_latipes_hsok
ENSPNAG00000014007	smn1	87	58.803	ENSOMEG00000007824	smn1	100	63.158	Oryzias_melastigma
ENSPNAG00000014007	smn1	80	43.011	ENSOGAG00000031414	-	92	44.043	Otolemur_garnettii
ENSPNAG00000014007	smn1	82	48.746	ENSOARG00000005425	-	98	47.955	Ovis_aries
ENSPNAG00000014007	smn1	82	49.821	ENSPPAG00000036640	-	93	51.331	Pan_paniscus
ENSPNAG00000014007	smn1	82	48.746	ENSPPRG00000005575	-	93	49.638	Panthera_pardus
ENSPNAG00000014007	smn1	82	48.571	ENSPTIG00000007745	-	93	49.819	Panthera_tigris_altaica
ENSPNAG00000014007	smn1	82	50.000	ENSPTRG00000016955	-	93	51.128	Pan_troglodytes
ENSPNAG00000014007	smn1	84	46.479	ENSPANG00000000253	-	94	47.653	Papio_anubis
ENSPNAG00000014007	smn1	82	49.643	ENSPANG00000013601	-	91	51.301	Papio_anubis
ENSPNAG00000014007	smn1	87	62.143	ENSPKIG00000011096	smn1	100	62.143	Paramormyrops_kingsleyae
ENSPNAG00000014007	smn1	82	50.183	ENSPSIG00000014787	-	94	47.782	Pelodiscus_sinensis
ENSPNAG00000014007	smn1	87	60.211	ENSPMGG00000012285	smn1	99	58.219	Periophthalmus_magnuspinnatus
ENSPNAG00000014007	smn1	82	52.045	ENSPCIG00000025764	-	93	50.923	Phascolarctos_cinereus
ENSPNAG00000014007	smn1	87	65.972	ENSPFOG00000007786	smn1	100	64.236	Poecilia_formosa
ENSPNAG00000014007	smn1	87	66.319	ENSPLAG00000012071	smn1	100	64.583	Poecilia_latipinna
ENSPNAG00000014007	smn1	87	65.972	ENSPMEG00000017085	smn1	100	64.236	Poecilia_mexicana
ENSPNAG00000014007	smn1	87	67.018	ENSPREG00000005824	smn1	100	64.583	Poecilia_reticulata
ENSPNAG00000014007	smn1	80	48.897	ENSPPYG00000015533	-	95	50.570	Pongo_abelii
ENSPNAG00000014007	smn1	53	76.923	ENSPPYG00000019189	-	99	36.842	Pongo_abelii
ENSPNAG00000014007	smn1	80	49.815	ENSPCAG00000004187	-	98	47.584	Procavia_capensis
ENSPNAG00000014007	smn1	54	48.000	ENSPCOG00000022307	-	65	52.778	Propithecus_coquereli
ENSPNAG00000014007	smn1	82	50.365	ENSPVAG00000005977	-	92	50.923	Pteropus_vampyrus
ENSPNAG00000014007	smn1	87	62.324	ENSPNYG00000014148	smn1	100	66.316	Pundamilia_nyererei
ENSPNAG00000014007	smn1	85	50.182	ENSRNOG00000018067	Smn1	94	50.000	Rattus_norvegicus
ENSPNAG00000014007	smn1	82	49.821	ENSRBIG00000037052	-	91	51.301	Rhinopithecus_bieti
ENSPNAG00000014007	smn1	81	48.263	ENSRBIG00000036775	-	88	47.692	Rhinopithecus_bieti
ENSPNAG00000014007	smn1	85	46.468	ENSRROG00000031088	-	91	43.165	Rhinopithecus_roxellana
ENSPNAG00000014007	smn1	82	49.821	ENSRROG00000039399	-	93	51.145	Rhinopithecus_roxellana
ENSPNAG00000014007	smn1	82	50.943	ENSSBOG00000011665	-	91	50.752	Saimiri_boliviensis_boliviensis
ENSPNAG00000014007	smn1	88	49.653	ENSSHAG00000001499	-	98	50.554	Sarcophilus_harrisii
ENSPNAG00000014007	smn1	87	67.742	ENSSFOG00015015507	smn1	100	67.742	Scleropages_formosus
ENSPNAG00000014007	smn1	87	58.657	ENSSMAG00000007922	smn1	100	63.860	Scophthalmus_maximus
ENSPNAG00000014007	smn1	87	67.832	ENSSDUG00000018533	smn1	100	65.854	Seriola_dumerili
ENSPNAG00000014007	smn1	87	68.182	ENSSLDG00000021135	smn1	100	66.202	Seriola_lalandi_dorsalis
ENSPNAG00000014007	smn1	87	54.965	ENSSPUG00000000373	-	99	54.770	Sphenodon_punctatus
ENSPNAG00000014007	smn1	87	66.084	ENSSPAG00000004345	smn1	100	66.084	Stegastes_partitus
ENSPNAG00000014007	smn1	83	41.445	ENSSSCG00000029127	-	75	69.444	Sus_scrofa
ENSPNAG00000014007	smn1	83	49.097	ENSSSCG00000016970	-	92	46.643	Sus_scrofa
ENSPNAG00000014007	smn1	84	48.592	ENSTGUG00000001548	-	100	46.528	Taeniopygia_guttata
ENSPNAG00000014007	smn1	87	57.244	ENSTRUG00000000736	smn	100	58.803	Takifugu_rubripes
ENSPNAG00000014007	smn1	85	59.786	ENSTNIG00000009892	smn1	100	59.170	Tetraodon_nigroviridis
ENSPNAG00000014007	smn1	80	45.149	ENSVPAG00000009887	-	64	81.481	Vicugna_pacos
ENSPNAG00000014007	smn1	83	48.754	ENSVVUG00000006934	-	93	48.551	Vulpes_vulpes
ENSPNAG00000014007	smn1	90	55.068	ENSXETG00000018189	smn2	95	55.944	Xenopus_tropicalis
ENSPNAG00000014007	smn1	76	32.824	ENSXETG00000004912	-	79	60.000	Xenopus_tropicalis
ENSPNAG00000014007	smn1	87	65.965	ENSXMAG00000001521	smn1	100	64.561	Xiphophorus_maculatus