EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000014900 (Gene tree)
Gene ID: 108423914
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 13575 bases
Position: chrKV575305.1:1930343-1943917
Accession: 108423914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000009411	ResIII	PF04851.15	3.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000015777	-	3711	XM_017691572	ENSPNAP00000009411	928 (aa)	XP_017547061	-

Gene Model

Click here to download ENSPNAG00000014900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000014900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000014900	smarcal1	94	53.154	ENSG00000138375	SMARCAL1	99	65.217	Homo_sapiens
ENSPNAG00000014900	smarcal1	94	66.268	ENSAPOG00000020156	SMARCAL1	99	66.050	Acanthochromis_polyacanthus
ENSPNAG00000014900	smarcal1	88	69.202	ENSACIG00000001500	smarcal1	90	76.143	Amphilophus_citrinellus
ENSPNAG00000014900	smarcal1	91	66.629	ENSAOCG00000014266	SMARCAL1	98	66.629	Amphiprion_ocellaris
ENSPNAG00000014900	smarcal1	94	66.085	ENSAPEG00000015861	SMARCAL1	99	66.085	Amphiprion_percula
ENSPNAG00000014900	smarcal1	95	66.849	ENSATEG00000020624	SMARCAL1	100	66.849	Anabas_testudineus
ENSPNAG00000014900	smarcal1	86	63.347	ENSAPLG00000009864	SMARCAL1	83	63.745	Anas_platyrhynchos
ENSPNAG00000014900	smarcal1	88	64.295	ENSACAG00000004612	SMARCAL1	86	64.295	Anolis_carolinensis
ENSPNAG00000014900	smarcal1	91	68.141	ENSACLG00000015990	SMARCAL1	97	67.574	Astatotilapia_calliptera
ENSPNAG00000014900	smarcal1	95	85.795	ENSAMXG00000003350	smarcal1	100	85.795	Astyanax_mexicanus
ENSPNAG00000014900	smarcal1	72	72.414	ENSCPBG00000013599	SMARCAL1	71	72.414	Chrysemys_picta_bellii
ENSPNAG00000014900	smarcal1	70	48.125	ENSCING00000009308	-	100	47.656	Ciona_intestinalis
ENSPNAG00000014900	smarcal1	91	65.119	ENSCSEG00000010785	SMARCAL1	99	65.459	Cynoglossus_semilaevis
ENSPNAG00000014900	smarcal1	95	65.039	ENSCVAG00000018780	SMARCAL1	100	64.778	Cyprinodon_variegatus
ENSPNAG00000014900	smarcal1	56	58.700	ENSEBUG00000011906	SMARCAL1	99	49.449	Eptatretus_burgeri
ENSPNAG00000014900	smarcal1	80	71.903	ENSELUG00000010440	-	100	70.771	Esox_lucius
ENSPNAG00000014900	smarcal1	94	62.716	ENSFALG00000003981	SMARCAL1	77	62.716	Ficedula_albicollis
ENSPNAG00000014900	smarcal1	95	65.290	ENSFHEG00000008380	SMARCAL1	100	65.440	Fundulus_heteroclitus
ENSPNAG00000014900	smarcal1	55	70.686	ENSGMOG00000010034	smarcal1	95	70.686	Gadus_morhua
ENSPNAG00000014900	smarcal1	78	64.843	ENSGALG00000011475	RPL37A	75	64.843	Gallus_gallus
ENSPNAG00000014900	smarcal1	83	76.262	ENSGACG00000006073	SMARCAL1	100	77.654	Gasterosteus_aculeatus
ENSPNAG00000014900	smarcal1	74	82.759	ENSGAGG00000015660	SMARCAL1	74	82.759	Gopherus_agassizii
ENSPNAG00000014900	smarcal1	91	68.027	ENSHBUG00000002973	smarcal1	97	67.460	Haplochromis_burtoni
ENSPNAG00000014900	smarcal1	90	65.525	ENSHCOG00000017921	smarcal1	98	65.643	Hippocampus_comes
ENSPNAG00000014900	smarcal1	91	65.750	ENSKMAG00000012023	SMARCAL1	99	65.979	Kryptolebias_marmoratus
ENSPNAG00000014900	smarcal1	88	67.115	ENSLBEG00000022915	smarcal1	99	67.115	Labrus_bergylta
ENSPNAG00000014900	smarcal1	86	65.146	ENSLBEG00000003493	smarcal1	100	65.146	Labrus_bergylta
ENSPNAG00000014900	smarcal1	87	82.759	ENSLACG00000010974	SMARCAL1	83	82.759	Latimeria_chalumnae
ENSPNAG00000014900	smarcal1	88	67.025	ENSLOCG00000009637	smarcal1	99	67.025	Lepisosteus_oculatus
ENSPNAG00000014900	smarcal1	92	66.178	ENSMAMG00000000828	SMARCAL1	99	66.743	Mastacembelus_armatus
ENSPNAG00000014900	smarcal1	91	68.027	ENSMZEG00005007660	SMARCAL1	97	67.460	Maylandia_zebra
ENSPNAG00000014900	smarcal1	81	79.310	ENSMGAG00000011658	SMARCAL1	77	64.973	Meleagris_gallopavo
ENSPNAG00000014900	smarcal1	88	62.805	ENSMMOG00000003842	smarcal1	94	62.545	Mola_mola
ENSPNAG00000014900	smarcal1	95	62.345	ENSMODG00000015544	SMARCAL1	75	62.345	Monodelphis_domestica
ENSPNAG00000014900	smarcal1	88	68.834	ENSNBRG00000016273	smarcal1	97	68.344	Neolamprologus_brichardi
ENSPNAG00000014900	smarcal1	69	65.571	ENSMEUG00000004395	SMARCAL1	74	64.977	Notamacropus_eugenii
ENSPNAG00000014900	smarcal1	91	68.063	ENSONIG00000009036	smarcal1	100	77.339	Oreochromis_niloticus
ENSPNAG00000014900	smarcal1	92	66.439	ENSORLG00000016455	SMARCAL1	98	66.439	Oryzias_latipes
ENSPNAG00000014900	smarcal1	92	66.098	ENSORLG00020001610	SMARCAL1	98	65.614	Oryzias_latipes_hni
ENSPNAG00000014900	smarcal1	92	66.212	ENSORLG00015001865	SMARCAL1	98	66.212	Oryzias_latipes_hsok
ENSPNAG00000014900	smarcal1	95	64.246	ENSOMEG00000001845	smarcal1	100	64.246	Oryzias_melastigma
ENSPNAG00000014900	smarcal1	95	64.071	ENSPMGG00000019092	SMARCAL1	100	64.182	Periophthalmus_magnuspinnatus
ENSPNAG00000014900	smarcal1	92	54.305	ENSPCIG00000022514	SMARCAL1	86	56.375	Phascolarctos_cinereus
ENSPNAG00000014900	smarcal1	95	64.114	ENSPFOG00000000560	SMARCAL1	100	64.570	Poecilia_formosa
ENSPNAG00000014900	smarcal1	95	64.114	ENSPMEG00000018146	SMARCAL1	100	64.570	Poecilia_mexicana
ENSPNAG00000014900	smarcal1	62	72.167	ENSPREG00000009591	SMARCAL1	78	80.556	Poecilia_reticulata
ENSPNAG00000014900	smarcal1	94	51.665	ENSSHAG00000013538	SMARCAL1	100	51.668	Sarcophilus_harrisii
ENSPNAG00000014900	smarcal1	95	64.447	ENSSMAG00000010427	SMARCAL1	100	64.194	Scophthalmus_maximus
ENSPNAG00000014900	smarcal1	91	67.713	ENSSDUG00000017470	SMARCAL1	95	67.713	Seriola_dumerili
ENSPNAG00000014900	smarcal1	95	65.944	ENSSLDG00000007224	SMARCAL1	100	65.944	Seriola_lalandi_dorsalis
ENSPNAG00000014900	smarcal1	77	67.313	ENSSPUG00000015369	SMARCAL1	73	67.313	Sphenodon_punctatus
ENSPNAG00000014900	smarcal1	74	75.656	ENSSPAG00000003742	smarcal1	99	67.722	Stegastes_partitus
ENSPNAG00000014900	smarcal1	74	60.844	ENSSSCG00000035501	SMARCAL1	76	61.047	Sus_scrofa
ENSPNAG00000014900	smarcal1	74	65.051	ENSTGUG00000005079	SMARCAL1	99	65.051	Taeniopygia_guttata
ENSPNAG00000014900	smarcal1	92	59.112	ENSTRUG00000010701	SMARCAL1	99	59.170	Takifugu_rubripes
ENSPNAG00000014900	smarcal1	94	46.372	ENSTTRG00000009001	SMARCAL1	99	46.688	Tursiops_truncatus
ENSPNAG00000014900	smarcal1	94	58.755	ENSXETG00000000465	smarcal1	99	58.755	Xenopus_tropicalis