EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000015480 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 24164 bases
Position: chrKV576031.1:56001-80164
Accession: 108411112
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000009931	EST1	PF10374.9	1.4e-06	1	1
ENSPNAP00000009931	EST1_DNA_bind	PF10373.9	5.3e-56	1	1
ENSPNAP00000009931	PIN_4	PF13638.6	6.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000016460	-	4512	XM_017682510	ENSPNAP00000009931	1503 (aa)	XP_017537999	-

Gene Model

Click here to download ENSPNAG00000015480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000015480's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000015480	smg6	74	62.877	ENSG00000070366	SMG6	100	62.709	Homo_sapiens
ENSPNAG00000015480	smg6	100	52.834	ENSAPOG00000019448	smg6	100	53.090	Acanthochromis_polyacanthus
ENSPNAG00000015480	smg6	88	63.016	ENSAMEG00000007632	SMG6	98	52.083	Ailuropoda_melanoleuca
ENSPNAG00000015480	smg6	91	53.469	ENSACIG00000012997	smg6	98	53.953	Amphilophus_citrinellus
ENSPNAG00000015480	smg6	100	52.952	ENSAOCG00000002630	smg6	100	53.557	Amphiprion_ocellaris
ENSPNAG00000015480	smg6	100	53.070	ENSAPEG00000019101	smg6	100	53.760	Amphiprion_percula
ENSPNAG00000015480	smg6	100	52.225	ENSATEG00000006483	smg6	89	59.785	Anabas_testudineus
ENSPNAG00000015480	smg6	63	51.194	ENSACAG00000011783	SMG6	97	47.668	Anolis_carolinensis
ENSPNAG00000015480	smg6	100	47.664	ENSANAG00000035760	SMG6	85	51.700	Aotus_nancymaae
ENSPNAG00000015480	smg6	100	51.190	ENSACLG00000005288	smg6	100	52.493	Astatotilapia_calliptera
ENSPNAG00000015480	smg6	98	60.502	ENSAMXG00000017326	smg6	89	72.342	Astyanax_mexicanus
ENSPNAG00000015480	smg6	87	63.016	ENSBTAG00000000267	SMG6	84	53.021	Bos_taurus
ENSPNAG00000015480	smg6	100	51.708	ENSCJAG00000001820	SMG6	85	51.797	Callithrix_jacchus
ENSPNAG00000015480	smg6	87	63.196	ENSCAFG00000019260	SMG6	97	47.843	Canis_familiaris
ENSPNAG00000015480	smg6	87	63.196	ENSCAFG00020009770	SMG6	97	47.843	Canis_lupus_dingo
ENSPNAG00000015480	smg6	87	63.196	ENSCHIG00000021998	SMG6	84	52.496	Capra_hircus
ENSPNAG00000015480	smg6	87	62.657	ENSTSYG00000003406	SMG6	100	61.967	Carlito_syrichta
ENSPNAG00000015480	smg6	66	56.776	ENSCAPG00000016197	SMG6	77	54.817	Cavia_aperea
ENSPNAG00000015480	smg6	74	62.883	ENSCPOG00000014878	SMG6	93	58.696	Cavia_porcellus
ENSPNAG00000015480	smg6	90	47.323	ENSCCAG00000035801	SMG6	85	51.719	Cebus_capucinus
ENSPNAG00000015480	smg6	90	47.967	ENSCATG00000031956	SMG6	85	52.992	Cercocebus_atys
ENSPNAG00000015480	smg6	90	47.106	ENSCLAG00000006748	SMG6	92	55.785	Chinchilla_lanigera
ENSPNAG00000015480	smg6	91	47.870	ENSCSAG00000013800	SMG6	85	53.307	Chlorocebus_sabaeus
ENSPNAG00000015480	smg6	97	50.551	ENSCPBG00000020369	SMG6	100	51.052	Chrysemys_picta_bellii
ENSPNAG00000015480	smg6	87	63.102	ENSCANG00000031764	SMG6	100	62.942	Colobus_angolensis_palliatus
ENSPNAG00000015480	smg6	77	48.006	ENSCGRG00000007782	Smg6	89	47.216	Cricetulus_griseus_crigri
ENSPNAG00000015480	smg6	100	51.621	ENSCSEG00000012757	smg6	100	51.405	Cynoglossus_semilaevis
ENSPNAG00000015480	smg6	98	69.444	ENSCVAG00000012789	smg6	74	58.659	Cyprinodon_variegatus
ENSPNAG00000015480	smg6	98	82.047	ENSDARG00000100481	smg6	100	62.741	Danio_rerio
ENSPNAG00000015480	smg6	74	63.243	ENSDNOG00000048283	SMG6	87	51.229	Dasypus_novemcinctus
ENSPNAG00000015480	smg6	87	63.016	ENSDORG00000016614	Smg6	87	59.817	Dipodomys_ordii
ENSPNAG00000015480	smg6	62	92.500	ENSETEG00000016790	SMG6	67	92.500	Echinops_telfairi
ENSPNAG00000015480	smg6	57	52.316	ENSEBUG00000005059	smg6	61	45.371	Eptatretus_burgeri
ENSPNAG00000015480	smg6	87	63.243	ENSEASG00005009318	SMG6	87	51.917	Equus_asinus_asinus
ENSPNAG00000015480	smg6	87	63.423	ENSECAG00000006519	SMG6	87	52.034	Equus_caballus
ENSPNAG00000015480	smg6	76	53.453	ENSEEUG00000003493	SMG6	81	53.513	Erinaceus_europaeus
ENSPNAG00000015480	smg6	88	59.551	ENSELUG00000005934	smg6	81	62.568	Esox_lucius
ENSPNAG00000015480	smg6	97	63.375	ENSFCAG00000028817	SMG6	98	51.832	Felis_catus
ENSPNAG00000015480	smg6	87	62.007	ENSFALG00000006538	SMG6	81	62.007	Ficedula_albicollis
ENSPNAG00000015480	smg6	76	63.375	ENSFDAG00000015106	SMG6	87	61.290	Fukomys_damarensis
ENSPNAG00000015480	smg6	98	69.844	ENSFHEG00000013282	smg6	75	58.819	Fundulus_heteroclitus
ENSPNAG00000015480	smg6	78	61.429	ENSGALG00000003108	SMG6	92	61.429	Gallus_gallus
ENSPNAG00000015480	smg6	98	70.957	ENSGAFG00000000379	smg6	84	72.222	Gambusia_affinis
ENSPNAG00000015480	smg6	78	59.380	ENSGACG00000020521	smg6	93	60.111	Gasterosteus_aculeatus
ENSPNAG00000015480	smg6	77	50.786	ENSGAGG00000025617	SMG6	85	50.195	Gopherus_agassizii
ENSPNAG00000015480	smg6	87	62.877	ENSGGOG00000017156	SMG6	85	52.340	Gorilla_gorilla
ENSPNAG00000015480	smg6	100	51.950	ENSHBUG00000021311	smg6	100	53.373	Haplochromis_burtoni
ENSPNAG00000015480	smg6	90	47.326	ENSHGLG00000012882	SMG6	93	58.621	Heterocephalus_glaber_female
ENSPNAG00000015480	smg6	90	47.432	ENSHGLG00100017815	SMG6	93	58.621	Heterocephalus_glaber_male
ENSPNAG00000015480	smg6	64	69.381	ENSHCOG00000008761	smg6	83	62.252	Hippocampus_comes
ENSPNAG00000015480	smg6	98	80.714	ENSIPUG00000012493	smg6	96	80.714	Ictalurus_punctatus
ENSPNAG00000015480	smg6	94	63.375	ENSSTOG00000028127	SMG6	93	63.571	Ictidomys_tridecemlineatus
ENSPNAG00000015480	smg6	55	60.744	ENSJJAG00000015367	Smg6	77	46.287	Jaculus_jaculus
ENSPNAG00000015480	smg6	81	58.358	ENSKMAG00000000279	smg6	90	59.347	Kryptolebias_marmoratus
ENSPNAG00000015480	smg6	89	58.958	ENSLBEG00000002184	smg6	87	59.042	Labrus_bergylta
ENSPNAG00000015480	smg6	52	41.037	ENSLACG00000000806	-	73	47.031	Latimeria_chalumnae
ENSPNAG00000015480	smg6	88	71.223	ENSLOCG00000006448	smg6	87	59.483	Lepisosteus_oculatus
ENSPNAG00000015480	smg6	90	47.942	ENSLAFG00000001261	SMG6	84	52.518	Loxodonta_africana
ENSPNAG00000015480	smg6	90	48.070	ENSMFAG00000003394	SMG6	85	53.307	Macaca_fascicularis
ENSPNAG00000015480	smg6	87	63.102	ENSMMUG00000023161	SMG6	85	53.071	Macaca_mulatta
ENSPNAG00000015480	smg6	90	48.158	ENSMNEG00000044592	SMG6	85	52.899	Macaca_nemestrina
ENSPNAG00000015480	smg6	90	49.034	ENSMLEG00000029353	SMG6	86	53.939	Mandrillus_leucophaeus
ENSPNAG00000015480	smg6	90	58.592	ENSMAMG00000020119	smg6	89	59.035	Mastacembelus_armatus
ENSPNAG00000015480	smg6	100	51.340	ENSMZEG00005024736	smg6	100	52.582	Maylandia_zebra
ENSPNAG00000015480	smg6	51	60.606	ENSMGAG00000005401	-	75	61.818	Meleagris_gallopavo
ENSPNAG00000015480	smg6	100	52.686	ENSMICG00000012913	SMG6	84	53.021	Microcebus_murinus
ENSPNAG00000015480	smg6	100	53.271	ENSMMOG00000010883	smg6	98	60.803	Mola_mola
ENSPNAG00000015480	smg6	90	47.003	ENSMODG00000010622	SMG6	86	51.286	Monodelphis_domestica
ENSPNAG00000015480	smg6	78	60.000	ENSMALG00000001106	smg6	74	61.739	Monopterus_albus
ENSPNAG00000015480	smg6	90	52.648	MGP_CAROLIEiJ_G0016729	Smg6	100	51.422	Mus_caroli
ENSPNAG00000015480	smg6	74	63.243	ENSMUSG00000038290	Smg6	87	61.395	Mus_musculus
ENSPNAG00000015480	smg6	74	62.703	MGP_PahariEiJ_G0017866	Smg6	87	61.395	Mus_pahari
ENSPNAG00000015480	smg6	87	63.243	MGP_SPRETEiJ_G0017572	Smg6	100	51.573	Mus_spretus
ENSPNAG00000015480	smg6	88	63.063	ENSMPUG00000013046	SMG6	87	52.009	Mustela_putorius_furo
ENSPNAG00000015480	smg6	87	63.555	ENSMLUG00000005739	SMG6	87	51.852	Myotis_lucifugus
ENSPNAG00000015480	smg6	74	62.703	ENSNGAG00000007287	Smg6	87	61.395	Nannospalax_galili
ENSPNAG00000015480	smg6	97	70.662	ENSNBRG00000009511	smg6	100	52.317	Neolamprologus_brichardi
ENSPNAG00000015480	smg6	87	62.877	ENSNLEG00000017171	SMG6	100	62.709	Nomascus_leucogenys
ENSPNAG00000015480	smg6	75	63.914	ENSMEUG00000015804	SMG6	87	51.928	Notamacropus_eugenii
ENSPNAG00000015480	smg6	89	50.568	ENSODEG00000008038	SMG6	95	50.687	Octodon_degus
ENSPNAG00000015480	smg6	98	71.127	ENSONIG00000005594	smg6	100	59.692	Oreochromis_niloticus
ENSPNAG00000015480	smg6	76	51.677	ENSOCUG00000013018	SMG6	83	52.984	Oryctolagus_cuniculus
ENSPNAG00000015480	smg6	100	49.882	ENSORLG00000003317	smg6	100	49.676	Oryzias_latipes
ENSPNAG00000015480	smg6	100	49.881	ENSORLG00020015343	smg6	100	49.940	Oryzias_latipes_hni
ENSPNAG00000015480	smg6	100	49.793	ENSORLG00015020454	smg6	100	50.179	Oryzias_latipes_hsok
ENSPNAG00000015480	smg6	77	68.522	ENSOMEG00000010838	smg6	77	58.089	Oryzias_melastigma
ENSPNAG00000015480	smg6	90	47.015	ENSOGAG00000004483	SMG6	85	52.429	Otolemur_garnettii
ENSPNAG00000015480	smg6	87	63.196	ENSOARG00000015076	SMG6	89	51.366	Ovis_aries
ENSPNAG00000015480	smg6	87	62.877	ENSPPAG00000043296	SMG6	85	52.932	Pan_paniscus
ENSPNAG00000015480	smg6	87	63.375	ENSPPRG00000014581	SMG6	98	52.599	Panthera_pardus
ENSPNAG00000015480	smg6	87	63.375	ENSPTIG00000008925	SMG6	100	62.709	Panthera_tigris_altaica
ENSPNAG00000015480	smg6	87	62.877	ENSPTRG00000008544	SMG6	100	62.709	Pan_troglodytes
ENSPNAG00000015480	smg6	90	47.773	ENSPANG00000024588	SMG6	85	52.418	Papio_anubis
ENSPNAG00000015480	smg6	88	50.487	ENSPSIG00000006660	SMG6	80	49.823	Pelodiscus_sinensis
ENSPNAG00000015480	smg6	93	69.253	ENSPMGG00000000844	smg6	97	69.253	Periophthalmus_magnuspinnatus
ENSPNAG00000015480	smg6	77	53.355	ENSPEMG00000020707	Smg6	95	59.227	Peromyscus_maniculatus_bairdii
ENSPNAG00000015480	smg6	100	54.402	ENSPFOG00000012035	smg6	99	59.409	Poecilia_formosa
ENSPNAG00000015480	smg6	100	52.070	ENSPLAG00000017660	smg6	74	61.994	Poecilia_latipinna
ENSPNAG00000015480	smg6	100	52.578	ENSPMEG00000000258	smg6	74	61.588	Poecilia_mexicana
ENSPNAG00000015480	smg6	100	51.660	ENSPREG00000010066	smg6	88	60.144	Poecilia_reticulata
ENSPNAG00000015480	smg6	87	57.672	ENSPPYG00000007790	SMG6	85	48.419	Pongo_abelii
ENSPNAG00000015480	smg6	98	48.879	ENSPCAG00000000552	SMG6	86	49.651	Procavia_capensis
ENSPNAG00000015480	smg6	87	63.196	ENSPCOG00000020925	SMG6	85	52.913	Propithecus_coquereli
ENSPNAG00000015480	smg6	73	63.016	ENSPVAG00000002159	SMG6	83	49.287	Pteropus_vampyrus
ENSPNAG00000015480	smg6	97	71.020	ENSPNYG00000024151	smg6	99	53.851	Pundamilia_nyererei
ENSPNAG00000015480	smg6	76	63.243	ENSRNOG00000003041	Smg6	82	63.441	Rattus_norvegicus
ENSPNAG00000015480	smg6	87	63.102	ENSRBIG00000024746	SMG6	87	51.756	Rhinopithecus_bieti
ENSPNAG00000015480	smg6	87	63.102	ENSRROG00000030423	SMG6	100	62.942	Rhinopithecus_roxellana
ENSPNAG00000015480	smg6	90	47.471	ENSSBOG00000022518	SMG6	84	50.550	Saimiri_boliviensis_boliviensis
ENSPNAG00000015480	smg6	98	49.247	ENSSHAG00000010045	SMG6	84	53.302	Sarcophilus_harrisii
ENSPNAG00000015480	smg6	92	73.274	ENSSFOG00015005436	smg6	74	61.557	Scleropages_formosus
ENSPNAG00000015480	smg6	100	51.908	ENSSMAG00000019777	smg6	86	60.706	Scophthalmus_maximus
ENSPNAG00000015480	smg6	100	53.842	ENSSDUG00000016412	smg6	100	53.514	Seriola_dumerili
ENSPNAG00000015480	smg6	88	54.899	ENSSLDG00000020747	smg6	96	54.527	Seriola_lalandi_dorsalis
ENSPNAG00000015480	smg6	99	51.446	ENSSPUG00000007152	SMG6	99	51.118	Sphenodon_punctatus
ENSPNAG00000015480	smg6	100	53.123	ENSSPAG00000015633	smg6	100	53.750	Stegastes_partitus
ENSPNAG00000015480	smg6	79	63.375	ENSSSCG00000017826	SMG6	86	53.056	Sus_scrofa
ENSPNAG00000015480	smg6	87	61.828	ENSTGUG00000005836	SMG6	92	61.828	Taeniopygia_guttata
ENSPNAG00000015480	smg6	100	52.949	ENSTRUG00000000358	smg6	81	61.066	Takifugu_rubripes
ENSPNAG00000015480	smg6	89	58.629	ENSTNIG00000016164	smg6	97	59.742	Tetraodon_nigroviridis
ENSPNAG00000015480	smg6	87	63.291	ENSTBEG00000011424	SMG6	84	63.568	Tupaia_belangeri
ENSPNAG00000015480	smg6	83	56.122	ENSTTRG00000001175	SMG6	78	56.313	Tursiops_truncatus
ENSPNAG00000015480	smg6	91	48.292	ENSUAMG00000025152	SMG6	89	51.207	Ursus_americanus
ENSPNAG00000015480	smg6	88	63.016	ENSUMAG00000009306	SMG6	89	51.398	Ursus_maritimus
ENSPNAG00000015480	smg6	83	81.481	ENSVPAG00000000225	SMG6	74	81.481	Vicugna_pacos
ENSPNAG00000015480	smg6	87	63.538	ENSVVUG00000021727	SMG6	99	48.777	Vulpes_vulpes
ENSPNAG00000015480	smg6	68	53.688	ENSXETG00000023799	SMG6	85	49.839	Xenopus_tropicalis
ENSPNAG00000015480	smg6	98	52.684	ENSXCOG00000009867	smg6	84	61.893	Xiphophorus_couchianus
ENSPNAG00000015480	smg6	100	50.678	ENSXMAG00000010321	smg6	86	61.093	Xiphophorus_maculatus