EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000015622 (Gene tree)
Gene ID: 108425185
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 16573 bases
Position: chrKV575315.1:502281-518853
Accession: 108425185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000009980	ResIII	PF04851.15	2e-07	1	1
ENSPNAP00000009927	ResIII	PF04851.15	2.6e-07	1	1
ENSPNAP00000029413	ResIII	PF04851.15	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000016493	-	6349	-	ENSPNAP00000029413	1423 (aa)	-	-
ENSPNAT00000016464	-	4134	-	ENSPNAP00000009927	1377 (aa)	-	-
ENSPNAT00000016496	-	6388	XM_017693651	ENSPNAP00000009980	1436 (aa)	XP_017549140	-

Gene Model

Click here to download ENSPNAG00000015622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000015622's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000015622	sbno1	69	65.760	ENSPNAG00000026609	sbno2a	75	65.760
ENSPNAG00000015622	sbno1	69	67.206	ENSPNAG00000020260	si:ch73-63e15.2	74	60.511

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000015622	sbno1	99	78.992	ENSG00000139697	SBNO1	99	79.063	Homo_sapiens
ENSPNAG00000015622	sbno1	82	86.147	ENSAPOG00000003196	sbno1	98	86.320	Acanthochromis_polyacanthus
ENSPNAG00000015622	sbno1	99	79.037	ENSAMEG00000015151	SBNO1	99	79.178	Ailuropoda_melanoleuca
ENSPNAG00000015622	sbno1	100	78.929	ENSACIG00000008088	sbno1	99	79.070	Amphilophus_citrinellus
ENSPNAG00000015622	sbno1	100	81.050	ENSAOCG00000014859	sbno1	99	81.831	Amphiprion_ocellaris
ENSPNAG00000015622	sbno1	100	81.050	ENSAPEG00000006069	sbno1	99	81.831	Amphiprion_percula
ENSPNAG00000015622	sbno1	100	82.295	ENSATEG00000006667	sbno1	100	82.649	Anabas_testudineus
ENSPNAG00000015622	sbno1	98	79.550	ENSAPLG00000015674	SBNO1	99	79.431	Anas_platyrhynchos
ENSPNAG00000015622	sbno1	98	77.826	ENSACAG00000015441	SBNO1	88	77.426	Anolis_carolinensis
ENSPNAG00000015622	sbno1	95	87.659	ENSANAG00000029958	-	99	87.545	Aotus_nancymaae
ENSPNAG00000015622	sbno1	100	78.357	ENSACLG00000024913	sbno1	100	78.286	Astatotilapia_calliptera
ENSPNAG00000015622	sbno1	100	93.477	ENSAMXG00000019473	sbno1	100	93.477	Astyanax_mexicanus
ENSPNAG00000015622	sbno1	100	79.220	ENSBTAG00000020505	SBNO1	99	79.362	Bos_taurus
ENSPNAG00000015622	sbno1	99	78.723	ENSCJAG00000016599	SBNO1	99	79.134	Callithrix_jacchus
ENSPNAG00000015622	sbno1	99	79.022	ENSCAFG00000007503	SBNO1	97	89.087	Canis_familiaris
ENSPNAG00000015622	sbno1	95	85.072	ENSCAFG00020015363	SBNO1	99	85.252	Canis_lupus_dingo
ENSPNAG00000015622	sbno1	95	87.433	ENSCHIG00000008382	SBNO1	99	87.433	Capra_hircus
ENSPNAG00000015622	sbno1	99	79.063	ENSTSYG00000012749	SBNO1	99	81.408	Carlito_syrichta
ENSPNAG00000015622	sbno1	91	87.590	ENSCAPG00000000384	SBNO1	99	87.590	Cavia_aperea
ENSPNAG00000015622	sbno1	95	87.590	ENSCPOG00000008109	SBNO1	99	87.590	Cavia_porcellus
ENSPNAG00000015622	sbno1	99	74.699	ENSCCAG00000035316	SBNO1	99	76.302	Cebus_capucinus
ENSPNAG00000015622	sbno1	91	87.410	ENSCATG00000008239	SBNO1	98	87.410	Cercocebus_atys
ENSPNAG00000015622	sbno1	95	87.950	ENSCLAG00000008995	SBNO1	99	87.950	Chinchilla_lanigera
ENSPNAG00000015622	sbno1	83	83.419	ENSCSAG00000002064	SBNO1	99	83.591	Chlorocebus_sabaeus
ENSPNAG00000015622	sbno1	96	75.640	ENSCHOG00000008814	SBNO1	96	75.640	Choloepus_hoffmanni
ENSPNAG00000015622	sbno1	98	79.375	ENSCPBG00000025968	SBNO1	99	79.259	Chrysemys_picta_bellii
ENSPNAG00000015622	sbno1	99	75.411	ENSCANG00000042688	-	99	75.340	Colobus_angolensis_palliatus
ENSPNAG00000015622	sbno1	95	86.176	ENSCGRG00001017470	Sbno1	99	86.176	Cricetulus_griseus_chok1gshd
ENSPNAG00000015622	sbno1	95	86.176	ENSCGRG00000004756	Sbno1	99	86.176	Cricetulus_griseus_crigri
ENSPNAG00000015622	sbno1	100	80.156	ENSCSEG00000011919	sbno1	100	81.006	Cynoglossus_semilaevis
ENSPNAG00000015622	sbno1	100	81.374	ENSCVAG00000007038	sbno1	100	81.799	Cyprinodon_variegatus
ENSPNAG00000015622	sbno1	100	88.164	ENSDARG00000099080	sbno1	100	88.092	Danio_rerio
ENSPNAG00000015622	sbno1	99	81.524	ENSDNOG00000017147	SBNO1	96	81.524	Dasypus_novemcinctus
ENSPNAG00000015622	sbno1	99	71.713	ENSDORG00000015261	Sbno1	99	71.764	Dipodomys_ordii
ENSPNAG00000015622	sbno1	90	77.095	ENSETEG00000005620	SBNO1	89	76.880	Echinops_telfairi
ENSPNAG00000015622	sbno1	75	62.092	ENSEBUG00000013823	sbno1	93	61.617	Eptatretus_burgeri
ENSPNAG00000015622	sbno1	50	75.316	ENSEASG00005012595	-	92	75.736	Equus_asinus_asinus
ENSPNAG00000015622	sbno1	99	79.418	ENSECAG00000006127	SBNO1	99	79.985	Equus_caballus
ENSPNAG00000015622	sbno1	82	82.514	ENSEEUG00000003793	SBNO1	82	82.514	Erinaceus_europaeus
ENSPNAG00000015622	sbno1	100	84.894	ENSELUG00000002886	sbno1	99	84.823	Esox_lucius
ENSPNAG00000015622	sbno1	99	79.276	ENSFCAG00000015331	SBNO1	99	79.418	Felis_catus
ENSPNAG00000015622	sbno1	98	79.260	ENSFALG00000009273	SBNO1	99	79.502	Ficedula_albicollis
ENSPNAG00000015622	sbno1	95	84.964	ENSFDAG00000014232	SBNO1	99	78.165	Fukomys_damarensis
ENSPNAG00000015622	sbno1	100	81.206	ENSFHEG00000007360	sbno1	100	81.489	Fundulus_heteroclitus
ENSPNAG00000015622	sbno1	94	83.308	ENSGMOG00000018229	sbno1	99	83.384	Gadus_morhua
ENSPNAG00000015622	sbno1	88	79.355	ENSGALG00000003392	SBNO1	99	79.227	Gallus_gallus
ENSPNAG00000015622	sbno1	100	81.644	ENSGAFG00000003960	sbno1	100	81.999	Gambusia_affinis
ENSPNAG00000015622	sbno1	94	82.589	ENSGACG00000015633	sbno1	99	82.300	Gasterosteus_aculeatus
ENSPNAG00000015622	sbno1	95	88.447	ENSGAGG00000001065	SBNO1	99	87.906	Gopherus_agassizii
ENSPNAG00000015622	sbno1	95	87.590	ENSGGOG00000015000	SBNO1	99	87.590	Gorilla_gorilla
ENSPNAG00000015622	sbno1	100	72.559	ENSHBUG00000011910	sbno1	100	72.139	Haplochromis_burtoni
ENSPNAG00000015622	sbno1	95	88.203	ENSHGLG00000014165	-	99	88.087	Heterocephalus_glaber_female
ENSPNAG00000015622	sbno1	92	86.796	ENSHCOG00000003246	sbno1	95	86.796	Hippocampus_comes
ENSPNAG00000015622	sbno1	100	91.905	ENSIPUG00000015830	Sbno1	98	91.977	Ictalurus_punctatus
ENSPNAG00000015622	sbno1	95	87.410	ENSSTOG00000023221	SBNO1	99	87.410	Ictidomys_tridecemlineatus
ENSPNAG00000015622	sbno1	95	83.633	ENSJJAG00000001741	Sbno1	99	83.633	Jaculus_jaculus
ENSPNAG00000015622	sbno1	100	81.573	ENSKMAG00000009696	sbno1	100	81.928	Kryptolebias_marmoratus
ENSPNAG00000015622	sbno1	100	82.394	ENSLBEG00000007623	sbno1	100	83.121	Labrus_bergylta
ENSPNAG00000015622	sbno1	100	76.416	ENSLACG00000017227	SBNO1	99	78.474	Latimeria_chalumnae
ENSPNAG00000015622	sbno1	100	85.846	ENSLOCG00000005725	sbno1	97	85.704	Lepisosteus_oculatus
ENSPNAG00000015622	sbno1	99	78.440	ENSLAFG00000002135	SBNO1	99	78.637	Loxodonta_africana
ENSPNAG00000015622	sbno1	95	83.808	ENSMFAG00000031429	SBNO1	99	83.808	Macaca_fascicularis
ENSPNAG00000015622	sbno1	95	83.808	ENSMMUG00000011496	SBNO1	99	83.808	Macaca_mulatta
ENSPNAG00000015622	sbno1	95	87.410	ENSMLEG00000033260	SBNO1	99	87.410	Mandrillus_leucophaeus
ENSPNAG00000015622	sbno1	100	81.928	ENSMAMG00000005473	sbno1	100	82.069	Mastacembelus_armatus
ENSPNAG00000015622	sbno1	98	79.636	ENSMGAG00000003274	SBNO1	99	79.473	Meleagris_gallopavo
ENSPNAG00000015622	sbno1	50	73.611	ENSMAUG00000004834	-	98	76.633	Mesocricetus_auratus
ENSPNAG00000015622	sbno1	95	85.118	ENSMICG00000006573	-	99	85.018	Microcebus_murinus
ENSPNAG00000015622	sbno1	95	86.715	ENSMOCG00000009390	Sbno1	99	86.715	Microtus_ochrogaster
ENSPNAG00000015622	sbno1	100	76.617	ENSMMOG00000008691	sbno1	99	77.486	Mola_mola
ENSPNAG00000015622	sbno1	99	78.749	ENSMODG00000012470	SBNO1	98	78.820	Monodelphis_domestica
ENSPNAG00000015622	sbno1	100	80.989	ENSMALG00000001056	sbno1	100	81.343	Monopterus_albus
ENSPNAG00000015622	sbno1	99	78.861	MGP_CAROLIEiJ_G0027749	Sbno1	95	92.105	Mus_caroli
ENSPNAG00000015622	sbno1	99	79.359	ENSMUSG00000038095	Sbno1	94	92.105	Mus_musculus
ENSPNAG00000015622	sbno1	99	79.146	MGP_PahariEiJ_G0024329	Sbno1	95	92.105	Mus_pahari
ENSPNAG00000015622	sbno1	99	79.288	MGP_SPRETEiJ_G0028747	Sbno1	95	92.105	Mus_spretus
ENSPNAG00000015622	sbno1	99	79.276	ENSMPUG00000001658	SBNO1	99	79.418	Mustela_putorius_furo
ENSPNAG00000015622	sbno1	99	78.921	ENSMLUG00000017159	SBNO1	99	78.992	Myotis_lucifugus
ENSPNAG00000015622	sbno1	92	88.454	ENSNGAG00000012620	Sbno1	98	88.454	Nannospalax_galili
ENSPNAG00000015622	sbno1	100	78.500	ENSNBRG00000019189	sbno1	100	78.429	Neolamprologus_brichardi
ENSPNAG00000015622	sbno1	99	75.798	ENSNLEG00000001502	SBNO1	98	82.651	Nomascus_leucogenys
ENSPNAG00000015622	sbno1	62	78.616	ENSMEUG00000008768	-	93	78.125	Notamacropus_eugenii
ENSPNAG00000015622	sbno1	99	77.738	ENSOPRG00000011054	SBNO1	99	78.023	Ochotona_princeps
ENSPNAG00000015622	sbno1	95	87.770	ENSODEG00000009997	SBNO1	99	87.770	Octodon_degus
ENSPNAG00000015622	sbno1	100	81.330	ENSONIG00000015348	sbno1	100	81.400	Oreochromis_niloticus
ENSPNAG00000015622	sbno1	100	77.589	ENSOCUG00000002441	SBNO1	94	78.799	Oryctolagus_cuniculus
ENSPNAG00000015622	sbno1	100	80.326	ENSORLG00000001593	sbno1	100	80.609	Oryzias_latipes
ENSPNAG00000015622	sbno1	100	80.510	ENSORLG00020015216	sbno1	100	80.723	Oryzias_latipes_hni
ENSPNAG00000015622	sbno1	100	80.595	ENSORLG00015002726	sbno1	100	80.807	Oryzias_latipes_hsok
ENSPNAG00000015622	sbno1	100	81.135	ENSOMEG00000019313	sbno1	99	81.366	Oryzias_melastigma
ENSPNAG00000015622	sbno1	50	71.389	ENSOGAG00000010781	-	98	74.385	Otolemur_garnettii
ENSPNAG00000015622	sbno1	100	78.951	ENSOARG00000004404	SBNO1	99	79.093	Ovis_aries
ENSPNAG00000015622	sbno1	95	87.590	ENSPPAG00000024635	SBNO1	99	87.590	Pan_paniscus
ENSPNAG00000015622	sbno1	99	79.276	ENSPPRG00000022092	SBNO1	99	79.418	Panthera_pardus
ENSPNAG00000015622	sbno1	99	79.232	ENSPTIG00000017803	SBNO1	99	79.445	Panthera_tigris_altaica
ENSPNAG00000015622	sbno1	95	87.590	ENSPTRG00000005597	SBNO1	99	87.590	Pan_troglodytes
ENSPNAG00000015622	sbno1	95	87.410	ENSPANG00000011640	SBNO1	99	87.410	Papio_anubis
ENSPNAG00000015622	sbno1	100	84.593	ENSPKIG00000001441	sbno1	100	85.816	Paramormyrops_kingsleyae
ENSPNAG00000015622	sbno1	98	78.384	ENSPSIG00000009572	-	99	78.714	Pelodiscus_sinensis
ENSPNAG00000015622	sbno1	92	75.154	ENSPSIG00000009256	-	99	75.231	Pelodiscus_sinensis
ENSPNAG00000015622	sbno1	95	86.894	ENSPEMG00000016087	Sbno1	99	86.894	Peromyscus_maniculatus_bairdii
ENSPNAG00000015622	sbno1	99	78.521	ENSPCIG00000010985	SBNO1	99	78.450	Phascolarctos_cinereus
ENSPNAG00000015622	sbno1	100	81.999	ENSPFOG00000005069	sbno1	100	82.353	Poecilia_formosa
ENSPNAG00000015622	sbno1	100	81.999	ENSPLAG00000015015	sbno1	100	82.353	Poecilia_latipinna
ENSPNAG00000015622	sbno1	100	82.011	ENSPMEG00000021212	sbno1	100	82.365	Poecilia_mexicana
ENSPNAG00000015622	sbno1	100	81.728	ENSPREG00000017746	sbno1	100	82.082	Poecilia_reticulata
ENSPNAG00000015622	sbno1	99	78.749	ENSPPYG00000005084	SBNO1	99	78.820	Pongo_abelii
ENSPNAG00000015622	sbno1	84	80.090	ENSPCAG00000008634	SBNO1	84	80.090	Procavia_capensis
ENSPNAG00000015622	sbno1	95	87.614	ENSPCOG00000024277	SBNO1	99	87.614	Propithecus_coquereli
ENSPNAG00000015622	sbno1	87	87.873	ENSPVAG00000015304	SBNO1	87	87.873	Pteropus_vampyrus
ENSPNAG00000015622	sbno1	100	81.077	ENSPNYG00000004291	sbno1	100	81.006	Pundamilia_nyererei
ENSPNAG00000015622	sbno1	95	87.230	ENSRNOG00000001064	Sbno1	99	87.230	Rattus_norvegicus
ENSPNAG00000015622	sbno1	95	87.410	ENSRROG00000034230	SBNO1	99	87.410	Rhinopithecus_roxellana
ENSPNAG00000015622	sbno1	97	75.900	ENSSBOG00000015422	SBNO1	99	76.250	Saimiri_boliviensis_boliviensis
ENSPNAG00000015622	sbno1	100	84.626	ENSSFOG00015019025	sbno1	100	85.267	Scleropages_formosus
ENSPNAG00000015622	sbno1	100	82.140	ENSSMAG00000013640	sbno1	100	82.282	Scophthalmus_maximus
ENSPNAG00000015622	sbno1	100	82.815	ENSSDUG00000023480	sbno1	100	83.027	Seriola_dumerili
ENSPNAG00000015622	sbno1	100	82.956	ENSSLDG00000007928	sbno1	100	83.168	Seriola_lalandi_dorsalis
ENSPNAG00000015622	sbno1	89	85.161	ENSSARG00000002594	SBNO1	89	85.161	Sorex_araneus
ENSPNAG00000015622	sbno1	98	78.125	ENSSPUG00000012640	SBNO1	99	78.286	Sphenodon_punctatus
ENSPNAG00000015622	sbno1	100	81.992	ENSSPAG00000016244	sbno1	100	82.345	Stegastes_partitus
ENSPNAG00000015622	sbno1	99	79.134	ENSSSCG00000009776	SBNO1	99	79.205	Sus_scrofa
ENSPNAG00000015622	sbno1	98	79.115	ENSTGUG00000005380	SBNO1	99	79.359	Taeniopygia_guttata
ENSPNAG00000015622	sbno1	99	80.171	ENSTRUG00000018490	sbno1	99	81.095	Takifugu_rubripes
ENSPNAG00000015622	sbno1	56	74.969	ENSTNIG00000013506	sbno1	99	75.845	Tetraodon_nigroviridis
ENSPNAG00000015622	sbno1	99	79.205	ENSUAMG00000019671	SBNO1	99	79.347	Ursus_americanus
ENSPNAG00000015622	sbno1	99	79.205	ENSUMAG00000004002	SBNO1	99	79.347	Ursus_maritimus
ENSPNAG00000015622	sbno1	95	75.556	ENSVPAG00000007024	SBNO1	92	73.554	Vicugna_pacos
ENSPNAG00000015622	sbno1	99	79.134	ENSVVUG00000027807	SBNO1	99	79.276	Vulpes_vulpes
ENSPNAG00000015622	sbno1	99	74.930	ENSXETG00000031930	SBNO1	99	74.755	Xenopus_tropicalis
ENSPNAG00000015622	sbno1	89	80.720	ENSXCOG00000011607	sbno1	95	81.767	Xiphophorus_couchianus
ENSPNAG00000015622	sbno1	100	81.799	ENSXMAG00000002140	sbno1	100	82.082	Xiphophorus_maculatus