EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000016511 (Gene tree)
Gene ID: 108434730
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 27852 bases
Position: chrKV575450.1:207962-235813
Accession: 108434730
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000010886	RRM_1	PF00076.22	1.1e-33	1	2
ENSPNAP00000010886	RRM_1	PF00076.22	1.1e-33	2	2
ENSPNAP00000010896	RRM_1	PF00076.22	1.5e-33	1	2
ENSPNAP00000010896	RRM_1	PF00076.22	1.5e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000017691	-	6732	XM_017710072	ENSPNAP00000010896	519 (aa)	XP_017565561	UPI00081470A0
ENSPNAT00000035895	-	1398	XM_017710073	ENSPNAP00000010886	465 (aa)	XP_017565562	-

Gene Model

Click here to download ENSPNAG00000016511's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000016511's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000016511	pspc1	71	63.978	ENSPNAG00000008232	nono	74	64.516
ENSPNAG00000016511	pspc1	87	57.112	ENSPNAG00000002128	sfpq	68	61.321

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000016511	pspc1	89	72.611	ENSG00000121390	PSPC1	98	72.237	Homo_sapiens
ENSPNAG00000016511	pspc1	100	70.950	ENSAPOG00000015946	pspc1	100	70.544	Acanthochromis_polyacanthus
ENSPNAG00000016511	pspc1	100	68.224	ENSAMEG00000017420	PSPC1	99	68.411	Ailuropoda_melanoleuca
ENSPNAG00000016511	pspc1	100	64.717	ENSACIG00000018695	pspc1	100	62.382	Amphilophus_citrinellus
ENSPNAG00000016511	pspc1	100	70.412	ENSAOCG00000005279	pspc1	100	69.720	Amphiprion_ocellaris
ENSPNAG00000016511	pspc1	100	70.998	ENSAPEG00000015927	pspc1	100	70.113	Amphiprion_percula
ENSPNAG00000016511	pspc1	100	61.710	ENSATEG00000004878	pspc1	100	58.780	Anabas_testudineus
ENSPNAG00000016511	pspc1	78	71.256	ENSAPLG00000006246	PSPC1	100	70.773	Anas_platyrhynchos
ENSPNAG00000016511	pspc1	67	73.885	ENSAPLG00000003643	SFPQ	77	62.740	Anas_platyrhynchos
ENSPNAG00000016511	pspc1	99	66.052	ENSACAG00000002093	PSPC1	99	65.989	Anolis_carolinensis
ENSPNAG00000016511	pspc1	63	68.041	ENSACAG00000013307	-	63	59.145	Anolis_carolinensis
ENSPNAG00000016511	pspc1	100	67.850	ENSANAG00000000059	PSPC1	98	71.835	Aotus_nancymaae
ENSPNAG00000016511	pspc1	100	63.296	ENSACLG00000027220	pspc1	100	61.194	Astatotilapia_calliptera
ENSPNAG00000016511	pspc1	100	90.019	ENSAMXG00000036881	pspc1	100	90.019	Astyanax_mexicanus
ENSPNAG00000016511	pspc1	100	67.790	ENSBTAG00000003934	PSPC1	99	67.603	Bos_taurus
ENSPNAG00000016511	pspc1	100	67.850	ENSCJAG00000004554	PSPC1	99	68.224	Callithrix_jacchus
ENSPNAG00000016511	pspc1	89	72.611	ENSCAFG00020002009	PSPC1	98	73.385	Canis_lupus_dingo
ENSPNAG00000016511	pspc1	100	67.790	ENSCHIG00000016708	PSPC1	99	67.603	Capra_hircus
ENSPNAG00000016511	pspc1	80	64.554	ENSTSYG00000032882	PSPC1	88	64.059	Carlito_syrichta
ENSPNAG00000016511	pspc1	100	67.978	ENSCPOG00000000395	PSPC1	98	73.575	Cavia_porcellus
ENSPNAG00000016511	pspc1	100	67.850	ENSCCAG00000033498	PSPC1	99	68.037	Cebus_capucinus
ENSPNAG00000016511	pspc1	90	71.698	ENSCATG00000036434	PSPC1	91	80.303	Cercocebus_atys
ENSPNAG00000016511	pspc1	77	72.127	ENSCLAG00000005241	PSPC1	89	71.883	Chinchilla_lanigera
ENSPNAG00000016511	pspc1	100	63.738	ENSCHOG00000008913	PSPC1	99	63.246	Choloepus_hoffmanni
ENSPNAG00000016511	pspc1	99	67.547	ENSCPBG00000020859	PSPC1	99	67.170	Chrysemys_picta_bellii
ENSPNAG00000016511	pspc1	57	81.818	ENSCANG00000018948	PSPC1	87	81.818	Colobus_angolensis_palliatus
ENSPNAG00000016511	pspc1	100	68.097	ENSCGRG00001018368	Pspc1	90	72.443	Cricetulus_griseus_chok1gshd
ENSPNAG00000016511	pspc1	100	68.097	ENSCGRG00000011724	Pspc1	90	72.443	Cricetulus_griseus_crigri
ENSPNAG00000016511	pspc1	100	64.925	ENSCVAG00000007679	-	100	64.595	Cyprinodon_variegatus
ENSPNAG00000016511	pspc1	100	78.286	ENSDARG00000006621	pspc1	100	81.683	Danio_rerio
ENSPNAG00000016511	pspc1	89	73.036	ENSDNOG00000011078	PSPC1	99	67.039	Dasypus_novemcinctus
ENSPNAG00000016511	pspc1	100	65.363	ENSDORG00000016050	Pspc1	99	64.618	Dipodomys_ordii
ENSPNAG00000016511	pspc1	55	80.198	ENSETEG00000000502	-	60	80.198	Echinops_telfairi
ENSPNAG00000016511	pspc1	62	46.006	ENSEBUG00000010133	pspc1	75	48.084	Eptatretus_burgeri
ENSPNAG00000016511	pspc1	87	62.255	ENSEBUG00000003964	-	62	71.014	Eptatretus_burgeri
ENSPNAG00000016511	pspc1	100	68.480	ENSEASG00005000119	PSPC1	98	74.026	Equus_asinus_asinus
ENSPNAG00000016511	pspc1	100	68.480	ENSECAG00000017286	PSPC1	98	74.026	Equus_caballus
ENSPNAG00000016511	pspc1	56	72.692	ENSEEUG00000011288	-	61	63.385	Erinaceus_europaeus
ENSPNAG00000016511	pspc1	100	76.636	ENSELUG00000003746	pspc1	100	76.636	Esox_lucius
ENSPNAG00000016511	pspc1	100	68.224	ENSFCAG00000027841	PSPC1	98	73.902	Felis_catus
ENSPNAG00000016511	pspc1	99	67.412	ENSFALG00000008750	PSPC1	99	67.159	Ficedula_albicollis
ENSPNAG00000016511	pspc1	97	68.522	ENSFDAG00000002617	PSPC1	99	68.053	Fukomys_damarensis
ENSPNAG00000016511	pspc1	100	63.536	ENSGMOG00000015074	pspc1	100	65.291	Gadus_morhua
ENSPNAG00000016511	pspc1	99	67.537	ENSGALG00000017142	PSPC1	99	67.420	Gallus_gallus
ENSPNAG00000016511	pspc1	83	70.960	ENSGAFG00000006327	pspc1	82	70.455	Gambusia_affinis
ENSPNAG00000016511	pspc1	100	64.432	ENSGACG00000014901	pspc1	93	78.313	Gasterosteus_aculeatus
ENSPNAG00000016511	pspc1	99	67.736	ENSGAGG00000019164	PSPC1	99	67.358	Gopherus_agassizii
ENSPNAG00000016511	pspc1	67	72.611	ENSGAGG00000017325	-	62	62.740	Gopherus_agassizii
ENSPNAG00000016511	pspc1	89	72.611	ENSGGOG00000003414	PSPC1	98	72.237	Gorilla_gorilla
ENSPNAG00000016511	pspc1	100	70.356	ENSHBUG00000001139	pspc1	100	70.265	Haplochromis_burtoni
ENSPNAG00000016511	pspc1	97	68.153	ENSHGLG00000018811	PSPC1	99	67.978	Heterocephalus_glaber_female
ENSPNAG00000016511	pspc1	74	73.988	ENSHGLG00100007962	PSPC1	99	74.128	Heterocephalus_glaber_male
ENSPNAG00000016511	pspc1	92	64.037	ENSHCOG00000013251	pspc1	99	59.692	Hippocampus_comes
ENSPNAG00000016511	pspc1	100	89.504	ENSIPUG00000013192	pspc1	100	88.762	Ictalurus_punctatus
ENSPNAG00000016511	pspc1	92	71.605	ENSSTOG00000026833	PSPC1	99	67.039	Ictidomys_tridecemlineatus
ENSPNAG00000016511	pspc1	85	74.138	ENSJJAG00000018334	Pspc1	88	72.824	Jaculus_jaculus
ENSPNAG00000016511	pspc1	89	59.870	ENSKMAG00000013525	-	90	66.372	Kryptolebias_marmoratus
ENSPNAG00000016511	pspc1	99	64.286	ENSLBEG00000004474	pspc1	89	65.720	Labrus_bergylta
ENSPNAG00000016511	pspc1	100	67.399	ENSLACG00000010762	PSPC1	100	67.910	Latimeria_chalumnae
ENSPNAG00000016511	pspc1	100	73.832	ENSLOCG00000010832	pspc1	99	74.812	Lepisosteus_oculatus
ENSPNAG00000016511	pspc1	89	72.611	ENSLAFG00000010968	PSPC1	99	67.603	Loxodonta_africana
ENSPNAG00000016511	pspc1	89	72.399	ENSMFAG00000032728	PSPC1	92	81.155	Macaca_fascicularis
ENSPNAG00000016511	pspc1	89	72.399	ENSMMUG00000020262	PSPC1	89	80.363	Macaca_mulatta
ENSPNAG00000016511	pspc1	89	72.399	ENSMNEG00000027401	PSPC1	98	69.872	Macaca_nemestrina
ENSPNAG00000016511	pspc1	77	71.394	ENSMLEG00000039043	PSPC1	94	71.394	Mandrillus_leucophaeus
ENSPNAG00000016511	pspc1	100	67.096	ENSMAMG00000004333	pspc1	100	66.543	Mastacembelus_armatus
ENSPNAG00000016511	pspc1	100	63.296	ENSMZEG00005005726	pspc1	100	61.194	Maylandia_zebra
ENSPNAG00000016511	pspc1	78	71.154	ENSMGAG00000015134	PSPC1	100	70.673	Meleagris_gallopavo
ENSPNAG00000016511	pspc1	98	62.395	ENSMAUG00000021067	Pspc1	87	69.268	Mesocricetus_auratus
ENSPNAG00000016511	pspc1	91	72.934	ENSMICG00000013970	PSPC1	98	73.385	Microcebus_murinus
ENSPNAG00000016511	pspc1	100	66.790	ENSMOCG00000006060	Pspc1	99	67.351	Microtus_ochrogaster
ENSPNAG00000016511	pspc1	93	43.750	ENSMMOG00000004352	pspc1	71	47.630	Mola_mola
ENSPNAG00000016511	pspc1	88	71.294	ENSMODG00000008029	PSPC1	78	69.106	Monodelphis_domestica
ENSPNAG00000016511	pspc1	100	68.421	ENSMALG00000008914	pspc1	100	68.691	Monopterus_albus
ENSPNAG00000016511	pspc1	100	66.667	MGP_CAROLIEiJ_G0019341	Pspc1	99	70.085	Mus_caroli
ENSPNAG00000016511	pspc1	100	66.851	ENSMUSG00000021938	Pspc1	99	70.085	Mus_musculus
ENSPNAG00000016511	pspc1	100	66.851	MGP_PahariEiJ_G0030359	Pspc1	99	70.085	Mus_pahari
ENSPNAG00000016511	pspc1	98	66.667	MGP_SPRETEiJ_G0020232	Pspc1	99	70.085	Mus_spretus
ENSPNAG00000016511	pspc1	100	68.037	ENSMPUG00000013347	PSPC1	99	68.224	Mustela_putorius_furo
ENSPNAG00000016511	pspc1	100	67.035	ENSMLUG00000017663	PSPC1	99	67.844	Myotis_lucifugus
ENSPNAG00000016511	pspc1	92	73.196	ENSNGAG00000011271	Pspc1	88	72.611	Nannospalax_galili
ENSPNAG00000016511	pspc1	83	68.367	ENSNBRG00000014059	pspc1	95	64.029	Neolamprologus_brichardi
ENSPNAG00000016511	pspc1	89	72.611	ENSNLEG00000001294	PSPC1	88	72.824	Nomascus_leucogenys
ENSPNAG00000016511	pspc1	76	75.355	ENSMEUG00000000476	PSPC1	83	66.154	Notamacropus_eugenii
ENSPNAG00000016511	pspc1	100	62.056	ENSODEG00000019012	-	88	67.742	Octodon_degus
ENSPNAG00000016511	pspc1	89	64.331	ENSODEG00000007817	-	99	58.071	Octodon_degus
ENSPNAG00000016511	pspc1	100	70.501	ENSONIG00000012010	pspc1	99	71.023	Oreochromis_niloticus
ENSPNAG00000016511	pspc1	69	75.204	ENSOANG00000009017	-	100	71.638	Ornithorhynchus_anatinus
ENSPNAG00000016511	pspc1	88	58.273	ENSOANG00000011381	-	87	57.569	Ornithorhynchus_anatinus
ENSPNAG00000016511	pspc1	89	72.611	ENSOCUG00000006153	PSPC1	99	67.970	Oryctolagus_cuniculus
ENSPNAG00000016511	pspc1	100	65.977	ENSORLG00000004232	-	100	65.028	Oryzias_latipes
ENSPNAG00000016511	pspc1	100	66.541	ENSORLG00020000578	PSPC1	100	65.217	Oryzias_latipes_hni
ENSPNAG00000016511	pspc1	100	66.541	ENSORLG00015017480	pspc1	100	65.028	Oryzias_latipes_hsok
ENSPNAG00000016511	pspc1	91	71.488	ENSOGAG00000012643	PSPC1	99	67.970	Otolemur_garnettii
ENSPNAG00000016511	pspc1	88	72.495	ENSOARG00000014163	PSPC1	95	70.362	Ovis_aries
ENSPNAG00000016511	pspc1	89	66.454	ENSPPAG00000009836	PSPC1	92	81.595	Pan_paniscus
ENSPNAG00000016511	pspc1	100	68.224	ENSPPRG00000008833	PSPC1	99	68.411	Panthera_pardus
ENSPNAG00000016511	pspc1	77	71.394	ENSPTIG00000016917	PSPC1	84	71.638	Panthera_tigris_altaica
ENSPNAG00000016511	pspc1	85	73.284	ENSPTRG00000005677	PSPC1	98	72.237	Pan_troglodytes
ENSPNAG00000016511	pspc1	89	72.399	ENSPANG00000001992	PSPC1	89	81.734	Papio_anubis
ENSPNAG00000016511	pspc1	97	76.872	ENSPKIG00000003578	pspc1	100	76.996	Paramormyrops_kingsleyae
ENSPNAG00000016511	pspc1	99	67.043	ENSPSIG00000005168	PSPC1	99	67.043	Pelodiscus_sinensis
ENSPNAG00000016511	pspc1	75	68.802	ENSPMGG00000015135	pspc1	80	76.389	Periophthalmus_magnuspinnatus
ENSPNAG00000016511	pspc1	92	71.458	ENSPEMG00000015214	Pspc1	99	67.351	Peromyscus_maniculatus_bairdii
ENSPNAG00000016511	pspc1	62	45.695	ENSPMAG00000004618	pspc1	81	46.816	Petromyzon_marinus
ENSPNAG00000016511	pspc1	92	70.902	ENSPCIG00000017680	PSPC1	100	67.039	Phascolarctos_cinereus
ENSPNAG00000016511	pspc1	97	67.885	ENSPFOG00000003362	pspc1	96	66.409	Poecilia_formosa
ENSPNAG00000016511	pspc1	100	67.041	ENSPLAG00000011540	pspc1	100	66.105	Poecilia_latipinna
ENSPNAG00000016511	pspc1	100	67.041	ENSPMEG00000008322	pspc1	100	66.105	Poecilia_mexicana
ENSPNAG00000016511	pspc1	100	66.667	ENSPREG00000007786	pspc1	100	65.730	Poecilia_reticulata
ENSPNAG00000016511	pspc1	89	72.399	ENSPPYG00000005186	PSPC1	97	71.030	Pongo_abelii
ENSPNAG00000016511	pspc1	92	69.959	ENSPCOG00000014364	PSPC1	99	64.060	Propithecus_coquereli
ENSPNAG00000016511	pspc1	89	72.611	ENSPVAG00000005036	PSPC1	99	67.542	Pteropus_vampyrus
ENSPNAG00000016511	pspc1	100	62.639	ENSPNYG00000008893	pspc1	100	61.007	Pundamilia_nyererei
ENSPNAG00000016511	pspc1	100	66.790	ENSRNOG00000020782	Pspc1	99	70.236	Rattus_norvegicus
ENSPNAG00000016511	pspc1	94	69.880	ENSRBIG00000036057	PSPC1	90	81.734	Rhinopithecus_bieti
ENSPNAG00000016511	pspc1	93	70.528	ENSRROG00000036334	PSPC1	98	72.494	Rhinopithecus_roxellana
ENSPNAG00000016511	pspc1	80	62.884	ENSSBOG00000028172	PSPC1	89	80.370	Saimiri_boliviensis_boliviensis
ENSPNAG00000016511	pspc1	92	66.122	ENSSHAG00000004696	PSPC1	99	62.709	Sarcophilus_harrisii
ENSPNAG00000016511	pspc1	85	81.519	ENSSFOG00015001395	pspc1	99	81.023	Scleropages_formosus
ENSPNAG00000016511	pspc1	100	68.216	ENSSMAG00000001761	pspc1	100	67.844	Scophthalmus_maximus
ENSPNAG00000016511	pspc1	100	68.421	ENSSDUG00000010651	pspc1	100	68.058	Seriola_dumerili
ENSPNAG00000016511	pspc1	100	63.258	ENSSLDG00000004284	pspc1	100	62.689	Seriola_lalandi_dorsalis
ENSPNAG00000016511	pspc1	86	66.106	ENSSARG00000000888	PSPC1	99	63.039	Sorex_araneus
ENSPNAG00000016511	pspc1	88	52.542	ENSSPUG00000001136	-	59	55.448	Sphenodon_punctatus
ENSPNAG00000016511	pspc1	99	57.303	ENSSPUG00000008550	PSPC1	99	56.473	Sphenodon_punctatus
ENSPNAG00000016511	pspc1	100	70.092	ENSSPAG00000001921	pspc1	100	69.131	Stegastes_partitus
ENSPNAG00000016511	pspc1	85	73.284	ENSSSCG00000009569	PSPC1	99	72.379	Sus_scrofa
ENSPNAG00000016511	pspc1	89	72.881	ENSTGUG00000011295	PSPC1	99	72.458	Taeniopygia_guttata
ENSPNAG00000016511	pspc1	100	62.664	ENSTRUG00000011335	pspc1	88	64.361	Takifugu_rubripes
ENSPNAG00000016511	pspc1	100	61.914	ENSTNIG00000010358	pspc1	93	61.111	Tetraodon_nigroviridis
ENSPNAG00000016511	pspc1	92	60.041	ENSTBEG00000002361	PSPC1	99	55.263	Tupaia_belangeri
ENSPNAG00000016511	pspc1	100	67.917	ENSTTRG00000003343	PSPC1	99	68.105	Tursiops_truncatus
ENSPNAG00000016511	pspc1	75	74.504	ENSUAMG00000012309	PSPC1	99	74.857	Ursus_americanus
ENSPNAG00000016511	pspc1	94	69.880	ENSUMAG00000013993	PSPC1	92	79.697	Ursus_maritimus
ENSPNAG00000016511	pspc1	77	71.638	ENSVPAG00000010029	PSPC1	100	71.394	Vicugna_pacos
ENSPNAG00000016511	pspc1	89	72.611	ENSVVUG00000006414	PSPC1	99	73.385	Vulpes_vulpes
ENSPNAG00000016511	pspc1	83	70.707	ENSXCOG00000017438	pspc1	93	70.707	Xiphophorus_couchianus
ENSPNAG00000016511	pspc1	83	70.707	ENSXMAG00000007929	pspc1	93	70.707	Xiphophorus_maculatus