EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000016598 (Gene tree)
Gene ID: 108430077
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 1409 bases
Position: chrKV575368.1:855230-856638
Accession: 108430077
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000010969	LSM	PF01423.22	9.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000017805	-	402	XM_017702253	ENSPNAP00000010969	134 (aa)	XP_017557742	-

Gene Model

Click here to download ENSPNAG00000016598's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000016598's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000016598	lsm4	72	31.313	ENSPNAG00000027769	si:ch73-14h10.2	99	31.313
ENSPNAG00000016598	lsm4	54	36.111	ENSPNAG00000008683	snrpd3l	88	30.088

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000016598	lsm4	65	98.851	ENSG00000130520	LSM4	96	83.582	Homo_sapiens
ENSPNAG00000016598	lsm4	99	87.413	ENSAPOG00000005643	lsm4	95	87.413	Acanthochromis_polyacanthus
ENSPNAG00000016598	lsm4	65	98.851	ENSAMEG00000011162	LSM4	91	83.582	Ailuropoda_melanoleuca
ENSPNAG00000016598	lsm4	99	89.286	ENSAOCG00000006414	lsm4	95	89.286	Amphiprion_ocellaris
ENSPNAG00000016598	lsm4	99	88.652	ENSAPEG00000006238	lsm4	95	88.652	Amphiprion_percula
ENSPNAG00000016598	lsm4	100	86.207	ENSATEG00000016559	lsm4	95	86.897	Anabas_testudineus
ENSPNAG00000016598	lsm4	65	98.851	ENSANAG00000034659	LSM4	96	83.582	Aotus_nancymaae
ENSPNAG00000016598	lsm4	100	88.571	ENSACLG00000022738	lsm4	95	89.286	Astatotilapia_calliptera
ENSPNAG00000016598	lsm4	100	97.778	ENSAMXG00000016932	lsm4	95	97.778	Astyanax_mexicanus
ENSPNAG00000016598	lsm4	65	98.851	ENSBTAG00000008578	LSM4	96	83.582	Bos_taurus
ENSPNAG00000016598	lsm4	61	76.829	WBGene00003078	lsm-4	80	68.687	Caenorhabditis_elegans
ENSPNAG00000016598	lsm4	65	98.851	ENSCJAG00000014171	LSM4	96	83.582	Callithrix_jacchus
ENSPNAG00000016598	lsm4	65	98.851	ENSCAFG00000014900	LSM4	87	83.582	Canis_familiaris
ENSPNAG00000016598	lsm4	65	98.851	ENSCAFG00020012137	LSM4	96	83.582	Canis_lupus_dingo
ENSPNAG00000016598	lsm4	65	98.851	ENSCHIG00000010928	LSM4	88	82.090	Capra_hircus
ENSPNAG00000016598	lsm4	65	97.701	ENSTSYG00000030906	LSM4	96	82.836	Carlito_syrichta
ENSPNAG00000016598	lsm4	65	97.701	ENSCAPG00000014140	LSM4	96	82.836	Cavia_aperea
ENSPNAG00000016598	lsm4	65	97.701	ENSCPOG00000024117	LSM4	96	82.836	Cavia_porcellus
ENSPNAG00000016598	lsm4	65	98.851	ENSCCAG00000036308	LSM4	96	83.582	Cebus_capucinus
ENSPNAG00000016598	lsm4	65	98.851	ENSCATG00000029311	LSM4	96	83.582	Cercocebus_atys
ENSPNAG00000016598	lsm4	65	98.851	ENSCLAG00000010828	LSM4	96	81.343	Chinchilla_lanigera
ENSPNAG00000016598	lsm4	65	98.851	ENSCSAG00000005370	LSM4	96	83.582	Chlorocebus_sabaeus
ENSPNAG00000016598	lsm4	99	85.714	ENSCPBG00000012925	LSM4	96	89.474	Chrysemys_picta_bellii
ENSPNAG00000016598	lsm4	63	92.941	ENSCING00000007519	-	72	92.308	Ciona_intestinalis
ENSPNAG00000016598	lsm4	63	92.941	ENSCSAVG00000008596	-	73	92.308	Ciona_savignyi
ENSPNAG00000016598	lsm4	65	98.851	ENSCANG00000043686	LSM4	96	83.582	Colobus_angolensis_palliatus
ENSPNAG00000016598	lsm4	65	95.402	ENSCGRG00001014436	Lsm4	96	80.597	Cricetulus_griseus_chok1gshd
ENSPNAG00000016598	lsm4	65	95.402	ENSCGRG00000009398	Lsm4	96	80.597	Cricetulus_griseus_crigri
ENSPNAG00000016598	lsm4	100	81.481	ENSCSEG00000016127	lsm4	95	93.333	Cynoglossus_semilaevis
ENSPNAG00000016598	lsm4	100	92.647	ENSCVAG00000010601	lsm4	95	92.647	Cyprinodon_variegatus
ENSPNAG00000016598	lsm4	90	91.803	ENSCVAG00000021828	lsm4	93	91.803	Cyprinodon_variegatus
ENSPNAG00000016598	lsm4	100	86.525	ENSDARG00000023852	lsm4	99	90.071	Danio_rerio
ENSPNAG00000016598	lsm4	65	97.701	ENSDORG00000024225	Lsm4	96	81.343	Dipodomys_ordii
ENSPNAG00000016598	lsm4	72	82.292	FBgn0032240	CG17768	62	82.292	Drosophila_melanogaster
ENSPNAG00000016598	lsm4	54	97.260	ENSETEG00000007762	-	96	81.667	Echinops_telfairi
ENSPNAG00000016598	lsm4	55	93.243	ENSEBUG00000003639	-	62	78.723	Eptatretus_burgeri
ENSPNAG00000016598	lsm4	65	98.851	ENSECAG00000010141	LSM4	54	82.090	Equus_caballus
ENSPNAG00000016598	lsm4	98	96.970	ENSELUG00000012821	lsm4	100	96.970	Esox_lucius
ENSPNAG00000016598	lsm4	65	98.851	ENSFCAG00000040580	LSM4	96	83.582	Felis_catus
ENSPNAG00000016598	lsm4	99	85.714	ENSFALG00000009478	LSM4	96	88.722	Ficedula_albicollis
ENSPNAG00000016598	lsm4	65	98.851	ENSFDAG00000010124	LSM4	96	82.836	Fukomys_damarensis
ENSPNAG00000016598	lsm4	100	76.190	ENSGMOG00000007729	lsm4	95	85.714	Gadus_morhua
ENSPNAG00000016598	lsm4	99	85.714	ENSGALG00000003385	LSM4	96	89.474	Gallus_gallus
ENSPNAG00000016598	lsm4	100	90.441	ENSGAFG00000004903	lsm4	92	87.705	Gambusia_affinis
ENSPNAG00000016598	lsm4	100	77.622	ENSGACG00000008140	lsm4	95	85.315	Gasterosteus_aculeatus
ENSPNAG00000016598	lsm4	99	85.714	ENSGAGG00000017812	LSM4	96	89.474	Gopherus_agassizii
ENSPNAG00000016598	lsm4	65	98.851	ENSGGOG00000012914	-	96	83.582	Gorilla_gorilla
ENSPNAG00000016598	lsm4	100	89.209	ENSHBUG00000008858	lsm4	76	89.928	Haplochromis_burtoni
ENSPNAG00000016598	lsm4	99	80.597	ENSHGLG00000006568	LSM4	96	81.343	Heterocephalus_glaber_female
ENSPNAG00000016598	lsm4	69	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSPNAG00000016598	lsm4	100	92.593	ENSHCOG00000008819	lsm4	95	92.593	Hippocampus_comes
ENSPNAG00000016598	lsm4	100	96.296	ENSIPUG00000005368	Lsm4	95	96.296	Ictalurus_punctatus
ENSPNAG00000016598	lsm4	65	98.851	ENSSTOG00000016494	LSM4	96	83.582	Ictidomys_tridecemlineatus
ENSPNAG00000016598	lsm4	65	96.552	ENSJJAG00000017420	Lsm4	96	82.090	Jaculus_jaculus
ENSPNAG00000016598	lsm4	63	98.824	ENSKMAG00000005073	lsm4	95	91.241	Kryptolebias_marmoratus
ENSPNAG00000016598	lsm4	100	88.028	ENSLBEG00000027930	lsm4	95	88.028	Labrus_bergylta
ENSPNAG00000016598	lsm4	99	85.075	ENSLACG00000015861	LSM4	95	88.806	Latimeria_chalumnae
ENSPNAG00000016598	lsm4	94	90.551	ENSLOCG00000002025	lsm4	94	92.537	Lepisosteus_oculatus
ENSPNAG00000016598	lsm4	65	97.701	ENSLAFG00000017459	LSM4	96	83.582	Loxodonta_africana
ENSPNAG00000016598	lsm4	65	98.851	ENSMFAG00000031194	LSM4	96	83.582	Macaca_fascicularis
ENSPNAG00000016598	lsm4	65	98.851	ENSMMUG00000004405	LSM4	96	83.582	Macaca_mulatta
ENSPNAG00000016598	lsm4	65	98.851	ENSMNEG00000042899	LSM4	96	83.582	Macaca_nemestrina
ENSPNAG00000016598	lsm4	65	98.851	ENSMLEG00000027948	LSM4	96	83.582	Mandrillus_leucophaeus
ENSPNAG00000016598	lsm4	100	91.852	ENSMAMG00000006190	lsm4	95	91.852	Mastacembelus_armatus
ENSPNAG00000016598	lsm4	100	89.209	ENSMZEG00005016420	lsm4	95	89.928	Maylandia_zebra
ENSPNAG00000016598	lsm4	99	82.836	ENSMGAG00000004976	LSM4	96	87.313	Meleagris_gallopavo
ENSPNAG00000016598	lsm4	73	95.918	ENSMICG00000000222	LSM4	96	82.836	Microcebus_murinus
ENSPNAG00000016598	lsm4	65	95.402	ENSMOCG00000020861	Lsm4	96	80.597	Microtus_ochrogaster
ENSPNAG00000016598	lsm4	54	100.000	ENSMODG00000015044	-	96	82.500	Monodelphis_domestica
ENSPNAG00000016598	lsm4	100	91.912	ENSMALG00000018159	lsm4	95	91.912	Monopterus_albus
ENSPNAG00000016598	lsm4	65	95.402	MGP_CAROLIEiJ_G0031158	Lsm4	96	80.597	Mus_caroli
ENSPNAG00000016598	lsm4	65	95.402	ENSMUSG00000031848	Lsm4	95	87.755	Mus_musculus
ENSPNAG00000016598	lsm4	65	95.402	MGP_PahariEiJ_G0021623	Lsm4	96	80.597	Mus_pahari
ENSPNAG00000016598	lsm4	65	95.402	MGP_SPRETEiJ_G0032276	Lsm4	96	80.597	Mus_spretus
ENSPNAG00000016598	lsm4	65	98.851	ENSMPUG00000015589	LSM4	96	83.582	Mustela_putorius_furo
ENSPNAG00000016598	lsm4	65	98.851	ENSMLUG00000004010	LSM4	96	83.582	Myotis_lucifugus
ENSPNAG00000016598	lsm4	65	95.402	ENSNGAG00000008644	Lsm4	96	80.597	Nannospalax_galili
ENSPNAG00000016598	lsm4	78	98.095	ENSNBRG00000022150	lsm4	65	98.095	Neolamprologus_brichardi
ENSPNAG00000016598	lsm4	54	95.890	ENSMEUG00000013229	LSM4	96	78.333	Notamacropus_eugenii
ENSPNAG00000016598	lsm4	58	96.154	ENSOPRG00000005575	LSM4	96	79.661	Ochotona_princeps
ENSPNAG00000016598	lsm4	99	73.485	ENSODEG00000004519	-	96	73.134	Octodon_degus
ENSPNAG00000016598	lsm4	65	98.851	ENSODEG00000020549	-	96	82.090	Octodon_degus
ENSPNAG00000016598	lsm4	100	88.571	ENSONIG00000012724	lsm4	95	89.286	Oreochromis_niloticus
ENSPNAG00000016598	lsm4	81	92.035	ENSOANG00000007434	LSM4	97	92.035	Ornithorhynchus_anatinus
ENSPNAG00000016598	lsm4	100	89.051	ENSORLG00000008391	lsm4	95	89.051	Oryzias_latipes
ENSPNAG00000016598	lsm4	100	89.781	ENSORLG00020014829	lsm4	95	89.781	Oryzias_latipes_hni
ENSPNAG00000016598	lsm4	100	89.051	ENSORLG00015010205	lsm4	95	89.051	Oryzias_latipes_hsok
ENSPNAG00000016598	lsm4	100	89.051	ENSOMEG00000003606	lsm4	95	89.051	Oryzias_melastigma
ENSPNAG00000016598	lsm4	73	95.918	ENSOGAG00000027992	LSM4	91	81.955	Otolemur_garnettii
ENSPNAG00000016598	lsm4	65	98.851	ENSOARG00000012553	LSM4	95	81.967	Ovis_aries
ENSPNAG00000016598	lsm4	65	98.851	ENSPPAG00000044045	-	96	83.582	Pan_paniscus
ENSPNAG00000016598	lsm4	65	98.851	ENSPPRG00000018264	LSM4	96	83.582	Panthera_pardus
ENSPNAG00000016598	lsm4	65	98.851	ENSPTIG00000006306	LSM4	96	83.582	Panthera_tigris_altaica
ENSPNAG00000016598	lsm4	65	98.851	ENSPTRG00000031470	LSM4	96	83.582	Pan_troglodytes
ENSPNAG00000016598	lsm4	65	98.851	ENSPANG00000014399	LSM4	96	83.582	Papio_anubis
ENSPNAG00000016598	lsm4	100	94.815	ENSPKIG00000006154	lsm4	95	94.815	Paramormyrops_kingsleyae
ENSPNAG00000016598	lsm4	99	84.962	ENSPSIG00000012358	LSM4	96	88.722	Pelodiscus_sinensis
ENSPNAG00000016598	lsm4	65	95.402	ENSPEMG00000001358	Lsm4	96	80.597	Peromyscus_maniculatus_bairdii
ENSPNAG00000016598	lsm4	100	90.441	ENSPFOG00000000570	lsm4	72	90.441	Poecilia_formosa
ENSPNAG00000016598	lsm4	100	91.176	ENSPLAG00000016267	lsm4	95	91.176	Poecilia_latipinna
ENSPNAG00000016598	lsm4	100	90.441	ENSPMEG00000016378	lsm4	95	90.441	Poecilia_mexicana
ENSPNAG00000016598	lsm4	100	91.176	ENSPREG00000011290	lsm4	72	91.176	Poecilia_reticulata
ENSPNAG00000016598	lsm4	65	98.851	ENSPPYG00000009736	LSM4	96	83.582	Pongo_abelii
ENSPNAG00000016598	lsm4	54	97.260	ENSPCAG00000008513	LSM4	96	81.667	Procavia_capensis
ENSPNAG00000016598	lsm4	73	95.918	ENSPCOG00000019837	LSM4	96	82.836	Propithecus_coquereli
ENSPNAG00000016598	lsm4	65	98.851	ENSPVAG00000015383	LSM4	96	83.582	Pteropus_vampyrus
ENSPNAG00000016598	lsm4	100	89.209	ENSPNYG00000016794	lsm4	95	89.928	Pundamilia_nyererei
ENSPNAG00000016598	lsm4	65	95.402	ENSRNOG00000019572	Lsm4	96	80.597	Rattus_norvegicus
ENSPNAG00000016598	lsm4	65	98.851	ENSRBIG00000024717	LSM4	96	83.582	Rhinopithecus_bieti
ENSPNAG00000016598	lsm4	65	98.851	ENSRROG00000045706	LSM4	96	83.582	Rhinopithecus_roxellana
ENSPNAG00000016598	lsm4	61	40.217	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSPNAG00000016598	lsm4	55	98.649	ENSSBOG00000022455	LSM4	96	81.818	Saimiri_boliviensis_boliviensis
ENSPNAG00000016598	lsm4	65	100.000	ENSSHAG00000011559	LSM4	96	84.328	Sarcophilus_harrisii
ENSPNAG00000016598	lsm4	100	95.556	ENSSFOG00015021067	lsm4	95	95.556	Scleropages_formosus
ENSPNAG00000016598	lsm4	73	97.959	ENSSMAG00000021020	lsm4	95	82.517	Scophthalmus_maximus
ENSPNAG00000016598	lsm4	100	78.750	ENSSDUG00000009588	lsm4	96	78.750	Seriola_dumerili
ENSPNAG00000016598	lsm4	100	78.261	ENSSLDG00000006827	lsm4	96	78.261	Seriola_lalandi_dorsalis
ENSPNAG00000016598	lsm4	65	100.000	ENSSPUG00000010166	LSM4	63	98.980	Sphenodon_punctatus
ENSPNAG00000016598	lsm4	99	87.413	ENSSPAG00000011615	lsm4	95	87.413	Stegastes_partitus
ENSPNAG00000016598	lsm4	65	98.851	ENSSSCG00000034314	LSM4	96	83.582	Sus_scrofa
ENSPNAG00000016598	lsm4	100	89.706	ENSTRUG00000021737	lsm4	95	89.706	Takifugu_rubripes
ENSPNAG00000016598	lsm4	100	86.861	ENSTNIG00000010191	lsm4	95	86.861	Tetraodon_nigroviridis
ENSPNAG00000016598	lsm4	65	98.851	ENSUAMG00000000665	LSM4	96	83.582	Ursus_americanus
ENSPNAG00000016598	lsm4	65	98.851	ENSUMAG00000009013	LSM4	96	83.582	Ursus_maritimus
ENSPNAG00000016598	lsm4	65	98.851	ENSVVUG00000008136	LSM4	68	83.582	Vulpes_vulpes
ENSPNAG00000016598	lsm4	99	81.818	ENSXETG00000024933	lsm4	96	89.474	Xenopus_tropicalis
ENSPNAG00000016598	lsm4	100	90.441	ENSXMAG00000026672	lsm4	72	90.441	Xiphophorus_maculatus