EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000016685 (Gene tree)
Gene ID: 108424396
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 15254 bases
Position: chrKV575308.1:4840481-4855734
Accession: 108424396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000010626	Rif1_N	PF12231.8	7.4e-81	1	1
ENSPNAP00000029819	Rif1_N	PF12231.8	1.5e-77	1	1
ENSPNAP00000010543	Rif1_N	PF12231.8	4.7e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000035791	-	7152	XM_017692429	ENSPNAP00000010626	2383 (aa)	XP_017547918	-
ENSPNAT00000017311	-	7125	-	ENSPNAP00000029819	2374 (aa)	-	-
ENSPNAT00000035754	-	7020	-	ENSPNAP00000010543	2339 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000016685's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000016685's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000016685	rif1	64	53.548	ENSG00000080345	RIF1	97	56.796	Homo_sapiens
ENSPNAG00000016685	rif1	70	62.673	ENSACIG00000017765	rif1	89	61.637	Amphilophus_citrinellus
ENSPNAG00000016685	rif1	65	56.278	ENSAOCG00000017231	rif1	62	55.946	Amphiprion_ocellaris
ENSPNAG00000016685	rif1	61	67.889	ENSAPEG00000013228	rif1	64	67.834	Amphiprion_percula
ENSPNAG00000016685	rif1	83	55.281	ENSATEG00000022887	rif1	92	55.281	Anabas_testudineus
ENSPNAG00000016685	rif1	75	49.311	ENSAPLG00000007092	RIF1	56	51.777	Anas_platyrhynchos
ENSPNAG00000016685	rif1	67	50.735	ENSACAG00000003714	RIF1	68	50.625	Anolis_carolinensis
ENSPNAG00000016685	rif1	69	49.048	ENSANAG00000024840	RIF1	69	49.852	Aotus_nancymaae
ENSPNAG00000016685	rif1	100	71.837	ENSAMXG00000010910	rif1	100	71.837	Astyanax_mexicanus
ENSPNAG00000016685	rif1	52	53.558	ENSBTAG00000021020	RIF1	63	53.741	Bos_taurus
ENSPNAG00000016685	rif1	52	52.669	ENSCJAG00000003138	RIF1	51	52.573	Callithrix_jacchus
ENSPNAG00000016685	rif1	64	53.871	ENSCAFG00000005670	RIF1	60	53.871	Canis_familiaris
ENSPNAG00000016685	rif1	51	51.626	ENSCAFG00020016401	RIF1	51	51.603	Canis_lupus_dingo
ENSPNAG00000016685	rif1	51	52.426	ENSCHIG00000020327	RIF1	50	52.247	Capra_hircus
ENSPNAG00000016685	rif1	64	55.161	ENSTSYG00000008861	RIF1	61	55.161	Carlito_syrichta
ENSPNAG00000016685	rif1	58	41.809	ENSCAPG00000008957	RIF1	67	41.809	Cavia_aperea
ENSPNAG00000016685	rif1	51	50.156	ENSCCAG00000024760	RIF1	68	48.352	Cebus_capucinus
ENSPNAG00000016685	rif1	64	53.968	ENSCATG00000033353	RIF1	63	53.968	Cercocebus_atys
ENSPNAG00000016685	rif1	64	51.799	ENSCLAG00000001517	RIF1	65	51.799	Chinchilla_lanigera
ENSPNAG00000016685	rif1	64	54.194	ENSCSAG00000016089	RIF1	63	54.194	Chlorocebus_sabaeus
ENSPNAG00000016685	rif1	70	52.696	ENSCPBG00000025885	RIF1	75	52.407	Chrysemys_picta_bellii
ENSPNAG00000016685	rif1	60	62.981	ENSCANG00000028962	RIF1	61	62.981	Colobus_angolensis_palliatus
ENSPNAG00000016685	rif1	52	49.574	ENSCGRG00001024589	Rif1	51	50.161	Cricetulus_griseus_chok1gshd
ENSPNAG00000016685	rif1	66	51.347	ENSCGRG00000010713	Rif1	67	51.920	Cricetulus_griseus_crigri
ENSPNAG00000016685	rif1	76	66.782	ENSCSEG00000003945	rif1	70	62.939	Cynoglossus_semilaevis
ENSPNAG00000016685	rif1	80	56.588	ENSCVAG00000022479	rif1	93	51.111	Cyprinodon_variegatus
ENSPNAG00000016685	rif1	99	56.884	ENSDARG00000062650	rif1	99	56.884	Danio_rerio
ENSPNAG00000016685	rif1	64	53.746	ENSDNOG00000011194	RIF1	60	53.746	Dasypus_novemcinctus
ENSPNAG00000016685	rif1	67	46.916	ENSETEG00000012421	RIF1	66	46.693	Echinops_telfairi
ENSPNAG00000016685	rif1	64	52.903	ENSEASG00005023434	RIF1	57	65.723	Equus_asinus_asinus
ENSPNAG00000016685	rif1	61	61.237	ENSECAG00000012679	RIF1	61	61.043	Equus_caballus
ENSPNAG00000016685	rif1	71	66.494	ENSELUG00000006826	rif1	70	61.607	Esox_lucius
ENSPNAG00000016685	rif1	67	52.291	ENSFCAG00000029742	RIF1	65	52.188	Felis_catus
ENSPNAG00000016685	rif1	58	54.401	ENSFALG00000013874	RIF1	68	54.494	Ficedula_albicollis
ENSPNAG00000016685	rif1	51	51.551	ENSFDAG00000006538	RIF1	65	51.551	Fukomys_damarensis
ENSPNAG00000016685	rif1	70	52.375	ENSFHEG00000013721	rif1	72	50.555	Fundulus_heteroclitus
ENSPNAG00000016685	rif1	65	58.667	ENSGMOG00000003517	rif1	90	59.327	Gadus_morhua
ENSPNAG00000016685	rif1	56	57.736	ENSGALG00000012484	RIF1	70	53.476	Gallus_gallus
ENSPNAG00000016685	rif1	84	61.834	ENSGAFG00000017196	rif1	92	62.391	Gambusia_affinis
ENSPNAG00000016685	rif1	66	70.464	ENSGACG00000008579	rif1	74	66.667	Gasterosteus_aculeatus
ENSPNAG00000016685	rif1	64	54.538	ENSGAGG00000012595	RIF1	71	52.994	Gopherus_agassizii
ENSPNAG00000016685	rif1	54	60.345	ENSGGOG00000040178	RIF1	56	60.146	Gorilla_gorilla
ENSPNAG00000016685	rif1	77	55.556	ENSHCOG00000015943	rif1	65	58.127	Hippocampus_comes
ENSPNAG00000016685	rif1	99	69.278	ENSIPUG00000021703	rif1	99	69.824	Ictalurus_punctatus
ENSPNAG00000016685	rif1	65	52.838	ENSSTOG00000020712	RIF1	65	52.544	Ictidomys_tridecemlineatus
ENSPNAG00000016685	rif1	64	55.429	ENSKMAG00000002852	rif1	74	51.239	Kryptolebias_marmoratus
ENSPNAG00000016685	rif1	72	63.444	ENSLBEG00000023196	rif1	68	63.444	Labrus_bergylta
ENSPNAG00000016685	rif1	52	56.843	ENSLACG00000005425	RIF1	53	56.748	Latimeria_chalumnae
ENSPNAG00000016685	rif1	95	55.839	ENSLOCG00000002657	rif1	100	55.034	Lepisosteus_oculatus
ENSPNAG00000016685	rif1	67	51.413	ENSLAFG00000009796	RIF1	66	51.227	Loxodonta_africana
ENSPNAG00000016685	rif1	64	53.651	ENSMNEG00000031616	RIF1	63	53.651	Macaca_nemestrina
ENSPNAG00000016685	rif1	64	53.333	ENSMLEG00000042945	RIF1	63	53.333	Mandrillus_leucophaeus
ENSPNAG00000016685	rif1	68	59.982	ENSMAMG00000001745	rif1	71	51.256	Mastacembelus_armatus
ENSPNAG00000016685	rif1	75	63.456	ENSMZEG00005020920	rif1	91	63.456	Maylandia_zebra
ENSPNAG00000016685	rif1	68	54.024	ENSMGAG00000012732	RIF1	73	54.140	Meleagris_gallopavo
ENSPNAG00000016685	rif1	52	52.006	ENSMICG00000046127	RIF1	51	52.381	Microcebus_murinus
ENSPNAG00000016685	rif1	87	53.110	ENSMMOG00000006519	rif1	68	61.851	Mola_mola
ENSPNAG00000016685	rif1	51	53.355	ENSMODG00000003703	RIF1	51	53.183	Monodelphis_domestica
ENSPNAG00000016685	rif1	77	64.653	ENSMALG00000016759	rif1	90	64.653	Monopterus_albus
ENSPNAG00000016685	rif1	64	52.031	ENSMUSG00000036202	Rif1	63	52.377	Mus_musculus
ENSPNAG00000016685	rif1	66	50.629	MGP_PahariEiJ_G0025006	Rif1	65	52.077	Mus_pahari
ENSPNAG00000016685	rif1	64	53.548	ENSMPUG00000000371	RIF1	62	53.548	Mustela_putorius_furo
ENSPNAG00000016685	rif1	54	51.111	ENSMLUG00000003376	RIF1	60	51.111	Myotis_lucifugus
ENSPNAG00000016685	rif1	76	62.264	ENSNBRG00000014257	rif1	93	62.264	Neolamprologus_brichardi
ENSPNAG00000016685	rif1	65	51.202	ENSNLEG00000010955	RIF1	63	51.379	Nomascus_leucogenys
ENSPNAG00000016685	rif1	51	49.920	ENSODEG00000003950	RIF1	65	50.359	Octodon_degus
ENSPNAG00000016685	rif1	69	62.295	ENSONIG00000013657	rif1	85	62.295	Oreochromis_niloticus
ENSPNAG00000016685	rif1	63	57.035	ENSOANG00000006078	-	64	57.035	Ornithorhynchus_anatinus
ENSPNAG00000016685	rif1	51	52.236	ENSOCUG00000017435	RIF1	50	52.377	Oryctolagus_cuniculus
ENSPNAG00000016685	rif1	81	55.874	ENSORLG00020001302	rif1	76	59.094	Oryzias_latipes_hni
ENSPNAG00000016685	rif1	77	55.859	ENSORLG00015000009	rif1	74	56.397	Oryzias_latipes_hsok
ENSPNAG00000016685	rif1	52	52.524	ENSOGAG00000006141	RIF1	66	52.347	Otolemur_garnettii
ENSPNAG00000016685	rif1	67	52.034	ENSPPAG00000023754	RIF1	65	51.697	Pan_paniscus
ENSPNAG00000016685	rif1	64	52.516	ENSPPRG00000003618	RIF1	62	52.516	Panthera_pardus
ENSPNAG00000016685	rif1	64	52.516	ENSPTIG00000020652	RIF1	62	52.516	Panthera_tigris_altaica
ENSPNAG00000016685	rif1	67	52.113	ENSPTRG00000012534	RIF1	65	51.776	Pan_troglodytes
ENSPNAG00000016685	rif1	64	53.651	ENSPANG00000008525	RIF1	63	53.651	Papio_anubis
ENSPNAG00000016685	rif1	91	66.412	ENSPKIG00000004267	rif1	93	66.412	Paramormyrops_kingsleyae
ENSPNAG00000016685	rif1	76	62.424	ENSPMGG00000016141	rif1	94	52.826	Periophthalmus_magnuspinnatus
ENSPNAG00000016685	rif1	64	51.631	ENSPEMG00000000446	Rif1	64	52.042	Peromyscus_maniculatus_bairdii
ENSPNAG00000016685	rif1	64	52.913	ENSPCIG00000009185	RIF1	66	52.738	Phascolarctos_cinereus
ENSPNAG00000016685	rif1	80	59.885	ENSPFOG00000017804	rif1	88	63.333	Poecilia_formosa
ENSPNAG00000016685	rif1	70	63.975	ENSPFOG00000000554	-	88	63.975	Poecilia_formosa
ENSPNAG00000016685	rif1	80	63.190	ENSPLAG00000017945	rif1	88	63.190	Poecilia_latipinna
ENSPNAG00000016685	rif1	63	60.172	ENSPMEG00000006897	-	69	59.853	Poecilia_mexicana
ENSPNAG00000016685	rif1	77	58.311	ENSPREG00000018052	rif1	79	57.923	Poecilia_reticulata
ENSPNAG00000016685	rif1	64	53.548	ENSPPYG00000012846	RIF1	62	53.548	Pongo_abelii
ENSPNAG00000016685	rif1	52	52.242	ENSPCOG00000027888	RIF1	65	52.460	Propithecus_coquereli
ENSPNAG00000016685	rif1	59	58.350	ENSPVAG00000014276	RIF1	59	58.642	Pteropus_vampyrus
ENSPNAG00000016685	rif1	75	63.456	ENSPNYG00000012940	rif1	88	63.456	Pundamilia_nyererei
ENSPNAG00000016685	rif1	64	54.194	ENSRBIG00000003704	RIF1	62	54.194	Rhinopithecus_bieti
ENSPNAG00000016685	rif1	64	54.516	ENSRROG00000028206	RIF1	62	54.516	Rhinopithecus_roxellana
ENSPNAG00000016685	rif1	60	56.322	ENSSBOG00000029530	RIF1	61	53.947	Saimiri_boliviensis_boliviensis
ENSPNAG00000016685	rif1	51	52.366	ENSSHAG00000018552	RIF1	51	52.184	Sarcophilus_harrisii
ENSPNAG00000016685	rif1	75	70.031	ENSSFOG00015021539	rif1	99	61.137	Scleropages_formosus
ENSPNAG00000016685	rif1	81	67.692	ENSSMAG00000011704	rif1	64	67.692	Scophthalmus_maximus
ENSPNAG00000016685	rif1	75	65.041	ENSSDUG00000015632	rif1	71	55.168	Seriola_dumerili
ENSPNAG00000016685	rif1	63	53.688	ENSSPUG00000003062	RIF1	66	53.688	Sphenodon_punctatus
ENSPNAG00000016685	rif1	63	65.927	ENSSPAG00000018359	rif1	93	65.336	Stegastes_partitus
ENSPNAG00000016685	rif1	52	52.003	ENSSSCG00000016395	RIF1	51	52.060	Sus_scrofa
ENSPNAG00000016685	rif1	79	60.907	ENSTRUG00000015808	rif1	93	60.907	Takifugu_rubripes
ENSPNAG00000016685	rif1	57	58.103	ENSTNIG00000011538	rif1	75	50.967	Tetraodon_nigroviridis
ENSPNAG00000016685	rif1	58	54.268	ENSTBEG00000016082	RIF1	57	53.846	Tupaia_belangeri
ENSPNAG00000016685	rif1	52	52.246	ENSTTRG00000011190	RIF1	50	52.146	Tursiops_truncatus
ENSPNAG00000016685	rif1	64	53.871	ENSUMAG00000000337	RIF1	62	53.871	Ursus_maritimus
ENSPNAG00000016685	rif1	64	53.871	ENSVVUG00000011293	RIF1	61	53.871	Vulpes_vulpes
ENSPNAG00000016685	rif1	80	52.674	ENSXMAG00000000506	rif1	88	50.679	Xiphophorus_maculatus