EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000016892 (Gene tree)
Gene ID: 108423830
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 23576 bases
Position: chrKV575304.1:4729727-4753302
Accession: 108423830
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000011246	RRM_1	PF00076.22	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000018159	-	4557	XM_017691429	ENSPNAP00000011246	1047 (aa)	XP_017546918	UPI0008142AED

Gene Model

Click here to download ENSPNAG00000016892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000016892's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000016892	scaf4a	59	44.027	ENSPNAG00000015199	-	73	45.946

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000016892	scaf4a	60	63.922	ENSG00000156304	SCAF4	76	58.708	Homo_sapiens
ENSPNAG00000016892	scaf4a	84	59.805	ENSAPOG00000002946	scaf4a	70	59.783	Acanthochromis_polyacanthus
ENSPNAG00000016892	scaf4a	84	60.714	ENSAOCG00000000615	scaf4a	70	59.783	Amphiprion_ocellaris
ENSPNAG00000016892	scaf4a	98	53.663	ENSAPEG00000021229	scaf4a	70	59.541	Amphiprion_percula
ENSPNAG00000016892	scaf4a	61	63.418	ENSAPLG00000002509	SCAF4	79	56.900	Anas_platyrhynchos
ENSPNAG00000016892	scaf4a	60	63.473	ENSANAG00000037494	SCAF4	76	57.593	Aotus_nancymaae
ENSPNAG00000016892	scaf4a	100	81.474	ENSAMXG00000008585	scaf4a	100	79.376	Astyanax_mexicanus
ENSPNAG00000016892	scaf4a	60	63.487	ENSBTAG00000018855	SCAF4	76	58.126	Bos_taurus
ENSPNAG00000016892	scaf4a	60	64.018	ENSCJAG00000008993	SCAF4	96	59.169	Callithrix_jacchus
ENSPNAG00000016892	scaf4a	59	63.678	ENSCAFG00000008863	SCAF4	76	57.679	Canis_familiaris
ENSPNAG00000016892	scaf4a	58	61.846	ENSCAFG00020026019	SCAF4	80	60.452	Canis_lupus_dingo
ENSPNAG00000016892	scaf4a	60	62.815	ENSCHIG00000008385	SCAF4	77	57.478	Capra_hircus
ENSPNAG00000016892	scaf4a	60	62.222	ENSCPOG00000012443	SCAF4	75	57.666	Cavia_porcellus
ENSPNAG00000016892	scaf4a	60	63.718	ENSCCAG00000033727	SCAF4	76	57.658	Cebus_capucinus
ENSPNAG00000016892	scaf4a	60	63.323	ENSCATG00000030379	SCAF4	76	57.480	Cercocebus_atys
ENSPNAG00000016892	scaf4a	58	61.261	ENSCLAG00000006298	SCAF4	76	54.749	Chinchilla_lanigera
ENSPNAG00000016892	scaf4a	60	63.528	ENSCSAG00000009438	SCAF4	76	57.416	Chlorocebus_sabaeus
ENSPNAG00000016892	scaf4a	60	63.623	ENSCANG00000029847	SCAF4	76	57.480	Colobus_angolensis_palliatus
ENSPNAG00000016892	scaf4a	50	74.706	ENSCGRG00000014360	Scaf4	64	56.171	Cricetulus_griseus_crigri
ENSPNAG00000016892	scaf4a	64	54.848	ENSCVAG00000009142	scaf4b	77	54.848	Cyprinodon_variegatus
ENSPNAG00000016892	scaf4a	87	74.837	ENSDARG00000077093	scaf4a	83	74.102	Danio_rerio
ENSPNAG00000016892	scaf4a	60	63.677	ENSEASG00005007756	SCAF4	76	58.032	Equus_asinus_asinus
ENSPNAG00000016892	scaf4a	60	63.677	ENSECAG00000014248	SCAF4	76	58.032	Equus_caballus
ENSPNAG00000016892	scaf4a	81	78.974	ENSELUG00000009909	scaf4a	63	82.474	Esox_lucius
ENSPNAG00000016892	scaf4a	60	63.556	ENSFCAG00000002228	SCAF4	77	57.753	Felis_catus
ENSPNAG00000016892	scaf4a	59	59.677	ENSFDAG00000017780	SCAF4	76	54.961	Fukomys_damarensis
ENSPNAG00000016892	scaf4a	94	61.905	ENSFHEG00000017866	scaf4a	64	56.413	Fundulus_heteroclitus
ENSPNAG00000016892	scaf4a	76	55.263	ENSGACG00000020580	scaf4a	75	56.022	Gasterosteus_aculeatus
ENSPNAG00000016892	scaf4a	70	71.053	ENSGGOG00000015557	SCAF4	75	59.794	Gorilla_gorilla
ENSPNAG00000016892	scaf4a	99	53.568	ENSHBUG00000007920	scaf4a	71	57.176	Haplochromis_burtoni
ENSPNAG00000016892	scaf4a	59	52.203	ENSHBUG00000019537	SCAF8	50	48.036	Haplochromis_burtoni
ENSPNAG00000016892	scaf4a	60	61.584	ENSHGLG00000010582	SCAF4	77	56.760	Heterocephalus_glaber_female
ENSPNAG00000016892	scaf4a	58	60.928	ENSHGLG00100009441	SCAF4	77	56.186	Heterocephalus_glaber_male
ENSPNAG00000016892	scaf4a	100	73.785	ENSIPUG00000011285	scaf4	100	75.429	Ictalurus_punctatus
ENSPNAG00000016892	scaf4a	98	52.837	ENSLBEG00000014675	scaf4a	70	57.444	Labrus_bergylta
ENSPNAG00000016892	scaf4a	98	60.166	ENSLOCG00000009162	scaf4a	92	61.816	Lepisosteus_oculatus
ENSPNAG00000016892	scaf4a	52	75.294	ENSLAFG00000010710	SCAF4	77	58.333	Loxodonta_africana
ENSPNAG00000016892	scaf4a	60	63.323	ENSMFAG00000037668	SCAF4	76	57.480	Macaca_fascicularis
ENSPNAG00000016892	scaf4a	60	63.323	ENSMMUG00000001712	SCAF4	76	57.480	Macaca_mulatta
ENSPNAG00000016892	scaf4a	60	63.323	ENSMNEG00000032966	SCAF4	75	57.480	Macaca_nemestrina
ENSPNAG00000016892	scaf4a	59	62.918	ENSMLEG00000039674	SCAF4	75	57.110	Mandrillus_leucophaeus
ENSPNAG00000016892	scaf4a	71	47.345	ENSMAMG00000013223	scaf4a	61	50.998	Mastacembelus_armatus
ENSPNAG00000016892	scaf4a	60	64.468	ENSMICG00000005256	SCAF4	76	58.769	Microcebus_murinus
ENSPNAG00000016892	scaf4a	60	67.026	ENSMODG00000021040	SCAF4	78	60.397	Monodelphis_domestica
ENSPNAG00000016892	scaf4a	60	70.070	MGP_CAROLIEiJ_G0020944	Scaf4	64	57.005	Mus_caroli
ENSPNAG00000016892	scaf4a	60	69.718	ENSMUSG00000022983	Scaf4	65	56.974	Mus_musculus
ENSPNAG00000016892	scaf4a	60	62.537	ENSMPUG00000001078	SCAF4	76	56.678	Mustela_putorius_furo
ENSPNAG00000016892	scaf4a	60	62.444	ENSNGAG00000005214	Scaf4	76	56.951	Nannospalax_galili
ENSPNAG00000016892	scaf4a	60	63.922	ENSNLEG00000003569	SCAF4	76	57.705	Nomascus_leucogenys
ENSPNAG00000016892	scaf4a	60	67.247	ENSODEG00000002718	SCAF4	76	54.525	Octodon_degus
ENSPNAG00000016892	scaf4a	100	52.702	ENSONIG00000004687	scaf4a	81	55.856	Oreochromis_niloticus
ENSPNAG00000016892	scaf4a	60	63.785	ENSOCUG00000008336	SCAF4	75	58.087	Oryctolagus_cuniculus
ENSPNAG00000016892	scaf4a	73	61.557	ENSORLG00000004384	scaf4a	74	58.717	Oryzias_latipes
ENSPNAG00000016892	scaf4a	68	56.383	ENSORLG00000003420	scaf4b	71	51.864	Oryzias_latipes
ENSPNAG00000016892	scaf4a	68	56.738	ENSORLG00020013853	scaf4b	71	52.203	Oryzias_latipes_hni
ENSPNAG00000016892	scaf4a	99	49.384	ENSORLG00020011857	scaf4a	74	57.678	Oryzias_latipes_hni
ENSPNAG00000016892	scaf4a	99	50.987	ENSORLG00015017880	scaf4a	79	56.357	Oryzias_latipes_hsok
ENSPNAG00000016892	scaf4a	99	60.422	ENSOMEG00000014482	scaf4a	74	58.151	Oryzias_melastigma
ENSPNAG00000016892	scaf4a	58	68.456	ENSOGAG00000014653	SCAF4	71	55.000	Otolemur_garnettii
ENSPNAG00000016892	scaf4a	58	61.654	ENSOARG00000013894	SCAF4	75	56.711	Ovis_aries
ENSPNAG00000016892	scaf4a	60	63.922	ENSPPAG00000028535	SCAF4	76	57.705	Pan_paniscus
ENSPNAG00000016892	scaf4a	59	63.348	ENSPPRG00000000635	SCAF4	76	57.517	Panthera_pardus
ENSPNAG00000016892	scaf4a	59	64.407	ENSPTIG00000021578	SCAF4	78	56.250	Panthera_tigris_altaica
ENSPNAG00000016892	scaf4a	60	63.922	ENSPTRG00000013848	SCAF4	76	57.705	Pan_troglodytes
ENSPNAG00000016892	scaf4a	60	63.323	ENSPANG00000017332	SCAF4	76	57.480	Papio_anubis
ENSPNAG00000016892	scaf4a	66	72.414	ENSPKIG00000022408	scaf4a	99	72.690	Paramormyrops_kingsleyae
ENSPNAG00000016892	scaf4a	96	50.267	ENSPSIG00000014242	SCAF4	76	57.801	Pelodiscus_sinensis
ENSPNAG00000016892	scaf4a	75	60.690	ENSPMGG00000016741	scaf4a	57	66.071	Periophthalmus_magnuspinnatus
ENSPNAG00000016892	scaf4a	59	66.406	ENSPCIG00000028183	SCAF4	70	60.848	Phascolarctos_cinereus
ENSPNAG00000016892	scaf4a	88	55.245	ENSPFOG00000017156	scaf4a	82	56.250	Poecilia_formosa
ENSPNAG00000016892	scaf4a	64	50.888	ENSPLAG00000004403	-	81	50.888	Poecilia_latipinna
ENSPNAG00000016892	scaf4a	71	62.484	ENSPLAG00000001972	scaf4a	96	57.488	Poecilia_latipinna
ENSPNAG00000016892	scaf4a	75	45.885	ENSPMEG00000006666	-	81	50.592	Poecilia_mexicana
ENSPNAG00000016892	scaf4a	68	49.711	ENSPREG00000013510	scaf4b	81	49.711	Poecilia_reticulata
ENSPNAG00000016892	scaf4a	60	63.922	ENSPPYG00000011355	SCAF4	76	57.705	Pongo_abelii
ENSPNAG00000016892	scaf4a	59	65.469	ENSPCOG00000018710	SCAF4	76	58.043	Propithecus_coquereli
ENSPNAG00000016892	scaf4a	60	64.671	ENSPVAG00000005220	SCAF4	76	58.890	Pteropus_vampyrus
ENSPNAG00000016892	scaf4a	60	63.922	ENSRROG00000029488	SCAF4	76	57.593	Rhinopithecus_roxellana
ENSPNAG00000016892	scaf4a	60	65.485	ENSSHAG00000001581	SCAF4	79	59.264	Sarcophilus_harrisii
ENSPNAG00000016892	scaf4a	56	59.425	ENSSFOG00015006338	scaf4a	87	61.340	Scleropages_formosus
ENSPNAG00000016892	scaf4a	97	52.137	ENSSMAG00000017901	scaf4a	68	57.314	Scophthalmus_maximus
ENSPNAG00000016892	scaf4a	83	60.737	ENSSDUG00000012918	scaf4a	71	57.661	Seriola_dumerili
ENSPNAG00000016892	scaf4a	83	60.865	ENSSLDG00000021671	scaf4a	70	57.679	Seriola_lalandi_dorsalis
ENSPNAG00000016892	scaf4a	60	64.511	ENSSARG00000009994	SCAF4	76	58.465	Sorex_araneus
ENSPNAG00000016892	scaf4a	60	63.476	ENSSSCG00000021023	SCAF4	76	58.716	Sus_scrofa
ENSPNAG00000016892	scaf4a	66	57.299	ENSTRUG00000009536	-	62	64.000	Takifugu_rubripes
ENSPNAG00000016892	scaf4a	59	63.222	ENSTTRG00000010963	SCAF4	76	57.551	Tursiops_truncatus
ENSPNAG00000016892	scaf4a	60	64.072	ENSUAMG00000008860	SCAF4	76	58.708	Ursus_americanus
ENSPNAG00000016892	scaf4a	58	63.553	ENSVVUG00000002953	SCAF4	76	57.551	Vulpes_vulpes