EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000017240 (Gene tree)
Gene ID: 108437509
Gene Symbol: rc3h1b
Alias: si:dkey-60b12.1
Full Name: roquin-1-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 18574 bases
Position: chrKV575522.1:222242-240815
Accession: 108437509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000030477	zf-CCCH	PF00642.24	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000036163	-	1413	-	ENSPNAP00000030477	470 (aa)	-	-
ENSPNAT00000018575	-	3827	XM_017714646	ENSPNAP00000030483	1114 (aa)	XP_017570135	UPI0008141FB4

Gene Model

Click here to download ENSPNAG00000017240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000017240's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000017240	rc3h1b	94	92.727	ENSPNAG00000023439	rc3h1a	96	92.744

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000017240	rc3h1b	97	88.865	ENSCAFG00020017112	RC3H1	99	91.818	Canis_lupus_dingo
ENSPNAG00000017240	rc3h1b	94	93.736	ENSHCOG00000009753	rc3h1b	93	93.736	Hippocampus_comes
ENSPNAG00000017240	rc3h1b	94	95.928	ENSMALG00000016106	rc3h1b	91	95.928	Monopterus_albus
ENSPNAG00000017240	rc3h1b	94	95.918	ENSMALG00000016581	-	97	95.918	Monopterus_albus
ENSPNAG00000017240	rc3h1b	94	96.606	ENSPMGG00000015037	rc3h1b	90	96.606	Periophthalmus_magnuspinnatus
ENSPNAG00000017240	rc3h1b	94	91.874	ENSPCIG00000002058	RC3H1	94	91.855	Phascolarctos_cinereus
ENSPNAG00000017240	rc3h1b	97	88.865	ENSVVUG00000014201	RC3H1	91	91.818	Vulpes_vulpes