EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000018435 (Gene tree)
Gene ID: 108429073
Gene Symbol: lsm12a
Alias: zgc:85812
Full Name: protein LSM12 homolog A-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 12184 bases
Position: chrKV575354.1:1017449-1029632
Accession: 108429073
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000012655	AD	PF09793.9	3.5e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000036608	-	2524	XM_017700552	ENSPNAP00000012655	196 (aa)	XP_017556041	UPI0008142523

Gene Model

Click here to download ENSPNAG00000018435's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000018435's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000018435	lsm12a	100	85.204	ENSPNAG00000004186	lsm12b	100	85.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000018435	lsm12a	100	77.041	ENSG00000161654	LSM12	100	77.041	Homo_sapiens
ENSPNAG00000018435	lsm12a	100	84.694	ENSAPOG00000007907	lsm12b	100	84.694	Acanthochromis_polyacanthus
ENSPNAG00000018435	lsm12a	100	75.377	ENSAMEG00000018321	LSM12	100	75.377	Ailuropoda_melanoleuca
ENSPNAG00000018435	lsm12a	100	83.673	ENSACIG00000008538	lsm12b	100	83.673	Amphilophus_citrinellus
ENSPNAG00000018435	lsm12a	100	85.204	ENSAOCG00000021847	lsm12b	88	85.204	Amphiprion_ocellaris
ENSPNAG00000018435	lsm12a	100	85.204	ENSAPEG00000002252	lsm12b	100	85.204	Amphiprion_percula
ENSPNAG00000018435	lsm12a	100	85.714	ENSATEG00000005705	lsm12b	100	85.714	Anabas_testudineus
ENSPNAG00000018435	lsm12a	100	77.041	ENSACAG00000004618	LSM12	100	77.041	Anolis_carolinensis
ENSPNAG00000018435	lsm12a	100	77.041	ENSANAG00000029011	LSM12	100	81.982	Aotus_nancymaae
ENSPNAG00000018435	lsm12a	100	84.184	ENSACLG00000026332	lsm12b	100	84.184	Astatotilapia_calliptera
ENSPNAG00000018435	lsm12a	100	84.184	ENSAMXG00000032952	lsm12b	100	84.184	Astyanax_mexicanus
ENSPNAG00000018435	lsm12a	100	90.816	ENSAMXG00000036117	lsm12a	91	90.816	Astyanax_mexicanus
ENSPNAG00000018435	lsm12a	100	77.041	ENSBTAG00000016252	LSM12	100	77.041	Bos_taurus
ENSPNAG00000018435	lsm12a	100	77.041	ENSCJAG00000048480	LSM12	100	81.982	Callithrix_jacchus
ENSPNAG00000018435	lsm12a	100	77.041	ENSCAFG00000014379	LSM12	92	77.041	Canis_familiaris
ENSPNAG00000018435	lsm12a	100	77.041	ENSCAFG00020012173	LSM12	100	77.041	Canis_lupus_dingo
ENSPNAG00000018435	lsm12a	100	77.041	ENSCHIG00000018175	LSM12	100	77.041	Capra_hircus
ENSPNAG00000018435	lsm12a	100	77.041	ENSTSYG00000036361	LSM12	100	77.041	Carlito_syrichta
ENSPNAG00000018435	lsm12a	83	75.309	ENSCAPG00000009647	LSM12	89	75.309	Cavia_aperea
ENSPNAG00000018435	lsm12a	100	76.531	ENSCPOG00000012860	LSM12	100	81.982	Cavia_porcellus
ENSPNAG00000018435	lsm12a	100	77.041	ENSCCAG00000032905	LSM12	100	81.982	Cebus_capucinus
ENSPNAG00000018435	lsm12a	100	77.041	ENSCATG00000030577	-	100	81.982	Cercocebus_atys
ENSPNAG00000018435	lsm12a	100	77.041	ENSCLAG00000015759	LSM12	100	81.982	Chinchilla_lanigera
ENSPNAG00000018435	lsm12a	100	76.531	ENSCSAG00000003486	LSM12	100	76.531	Chlorocebus_sabaeus
ENSPNAG00000018435	lsm12a	56	82.569	ENSCHOG00000001198	LSM12	100	82.569	Choloepus_hoffmanni
ENSPNAG00000018435	lsm12a	100	77.041	ENSCPBG00000027105	LSM12	100	77.041	Chrysemys_picta_bellii
ENSPNAG00000018435	lsm12a	100	77.041	ENSCANG00000043328	LSM12	100	81.982	Colobus_angolensis_palliatus
ENSPNAG00000018435	lsm12a	100	77.041	ENSCGRG00001002094	Lsm12	100	81.982	Cricetulus_griseus_chok1gshd
ENSPNAG00000018435	lsm12a	89	71.264	ENSCGRG00000004316	Lsm12	98	71.264	Cricetulus_griseus_crigri
ENSPNAG00000018435	lsm12a	100	86.224	ENSCSEG00000008434	lsm12b	100	86.224	Cynoglossus_semilaevis
ENSPNAG00000018435	lsm12a	100	84.694	ENSCVAG00000008755	lsm12b	100	84.694	Cyprinodon_variegatus
ENSPNAG00000018435	lsm12a	100	83.163	ENSDARG00000028848	lsm12a	100	83.163	Danio_rerio
ENSPNAG00000018435	lsm12a	100	83.163	ENSDARG00000109510	lsm12b	100	83.163	Danio_rerio
ENSPNAG00000018435	lsm12a	100	77.041	ENSDNOG00000002418	LSM12	91	77.041	Dasypus_novemcinctus
ENSPNAG00000018435	lsm12a	100	77.041	ENSDORG00000016381	Lsm12	100	81.982	Dipodomys_ordii
ENSPNAG00000018435	lsm12a	83	36.747	FBgn0030364	Lsm12	80	36.207	Drosophila_melanogaster
ENSPNAG00000018435	lsm12a	73	32.484	FBgn0036057	CG14164	83	32.484	Drosophila_melanogaster
ENSPNAG00000018435	lsm12a	100	77.041	ENSETEG00000008374	LSM12	100	77.041	Echinops_telfairi
ENSPNAG00000018435	lsm12a	88	69.364	ENSETEG00000011012	-	99	69.364	Echinops_telfairi
ENSPNAG00000018435	lsm12a	95	59.358	ENSEBUG00000016299	lsm12a	92	63.473	Eptatretus_burgeri
ENSPNAG00000018435	lsm12a	100	77.041	ENSEASG00005010155	LSM12	100	77.041	Equus_asinus_asinus
ENSPNAG00000018435	lsm12a	100	77.041	ENSECAG00000009071	LSM12	100	81.982	Equus_caballus
ENSPNAG00000018435	lsm12a	78	77.778	ENSEEUG00000002419	-	100	77.778	Erinaceus_europaeus
ENSPNAG00000018435	lsm12a	100	83.673	ENSELUG00000015538	lsm12b	100	79.082	Esox_lucius
ENSPNAG00000018435	lsm12a	100	83.163	ENSELUG00000000256	-	100	83.163	Esox_lucius
ENSPNAG00000018435	lsm12a	100	77.041	ENSFCAG00000037021	LSM12	100	77.041	Felis_catus
ENSPNAG00000018435	lsm12a	76	79.054	ENSFDAG00000008954	LSM12	87	79.054	Fukomys_damarensis
ENSPNAG00000018435	lsm12a	100	85.714	ENSFHEG00000019913	lsm12b	100	85.714	Fundulus_heteroclitus
ENSPNAG00000018435	lsm12a	81	87.342	ENSGMOG00000015449	lsm12b	100	87.342	Gadus_morhua
ENSPNAG00000018435	lsm12a	78	80.392	ENSGALG00000039803	LSM12	100	80.392	Gallus_gallus
ENSPNAG00000018435	lsm12a	100	84.694	ENSGAFG00000011829	lsm12b	100	84.694	Gambusia_affinis
ENSPNAG00000018435	lsm12a	81	87.342	ENSGACG00000003428	lsm12b	100	87.342	Gasterosteus_aculeatus
ENSPNAG00000018435	lsm12a	100	77.041	ENSGAGG00000021965	LSM12	100	77.041	Gopherus_agassizii
ENSPNAG00000018435	lsm12a	100	77.041	ENSGGOG00000010589	-	100	81.982	Gorilla_gorilla
ENSPNAG00000018435	lsm12a	85	84.431	ENSHBUG00000007667	lsm12b	74	84.431	Haplochromis_burtoni
ENSPNAG00000018435	lsm12a	100	77.041	ENSHGLG00000011411	LSM12	100	81.982	Heterocephalus_glaber_female
ENSPNAG00000018435	lsm12a	79	77.922	ENSHGLG00100000241	LSM12	82	77.922	Heterocephalus_glaber_male
ENSPNAG00000018435	lsm12a	100	84.694	ENSHCOG00000002094	lsm12b	100	84.694	Hippocampus_comes
ENSPNAG00000018435	lsm12a	100	82.143	ENSIPUG00000008936	lsm12a	100	82.143	Ictalurus_punctatus
ENSPNAG00000018435	lsm12a	100	83.163	ENSIPUG00000014800	lsm12	100	83.163	Ictalurus_punctatus
ENSPNAG00000018435	lsm12a	100	77.041	ENSSTOG00000007403	LSM12	100	81.982	Ictidomys_tridecemlineatus
ENSPNAG00000018435	lsm12a	100	76.531	ENSJJAG00000004364	-	100	81.081	Jaculus_jaculus
ENSPNAG00000018435	lsm12a	96	67.895	ENSJJAG00000011793	-	100	67.895	Jaculus_jaculus
ENSPNAG00000018435	lsm12a	76	68.456	ENSJJAG00000014652	-	89	68.456	Jaculus_jaculus
ENSPNAG00000018435	lsm12a	85	84.431	ENSKMAG00000007704	lsm12b	56	84.431	Kryptolebias_marmoratus
ENSPNAG00000018435	lsm12a	100	85.714	ENSLBEG00000027999	lsm12b	100	85.714	Labrus_bergylta
ENSPNAG00000018435	lsm12a	100	81.633	ENSLACG00000015981	LSM12	100	81.633	Latimeria_chalumnae
ENSPNAG00000018435	lsm12a	100	83.163	ENSLOCG00000013079	lsm12b	99	83.163	Lepisosteus_oculatus
ENSPNAG00000018435	lsm12a	100	77.041	ENSLAFG00000005202	LSM12	100	77.041	Loxodonta_africana
ENSPNAG00000018435	lsm12a	100	77.041	ENSMFAG00000031376	LSM12	100	81.982	Macaca_fascicularis
ENSPNAG00000018435	lsm12a	100	77.041	ENSMMUG00000006804	LSM12	100	81.982	Macaca_mulatta
ENSPNAG00000018435	lsm12a	100	77.041	ENSMNEG00000030594	-	100	81.982	Macaca_nemestrina
ENSPNAG00000018435	lsm12a	100	77.041	ENSMLEG00000039934	LSM12	100	81.982	Mandrillus_leucophaeus
ENSPNAG00000018435	lsm12a	100	85.714	ENSMAMG00000004279	lsm12b	100	85.714	Mastacembelus_armatus
ENSPNAG00000018435	lsm12a	100	84.184	ENSMZEG00005005754	lsm12b	100	84.184	Maylandia_zebra
ENSPNAG00000018435	lsm12a	100	76.531	ENSMICG00000037219	LSM12	100	81.081	Microcebus_murinus
ENSPNAG00000018435	lsm12a	100	65.816	ENSMOCG00000017015	-	86	65.816	Microtus_ochrogaster
ENSPNAG00000018435	lsm12a	100	77.041	ENSMOCG00000019878	-	100	81.982	Microtus_ochrogaster
ENSPNAG00000018435	lsm12a	100	85.204	ENSMMOG00000020848	lsm12b	100	85.204	Mola_mola
ENSPNAG00000018435	lsm12a	100	84.694	ENSMALG00000007578	lsm12b	100	84.694	Monopterus_albus
ENSPNAG00000018435	lsm12a	100	76.531	MGP_CAROLIEiJ_G0017241	Lsm12	100	81.081	Mus_caroli
ENSPNAG00000018435	lsm12a	100	77.041	ENSMUSG00000020922	Lsm12	100	81.982	Mus_musculus
ENSPNAG00000018435	lsm12a	100	70.892	MGP_PahariEiJ_G0018371	Lsm12	100	81.982	Mus_pahari
ENSPNAG00000018435	lsm12a	100	76.531	MGP_SPRETEiJ_G0018084	Lsm12	99	83.333	Mus_spretus
ENSPNAG00000018435	lsm12a	100	76.531	ENSMLUG00000006391	LSM12	100	76.531	Myotis_lucifugus
ENSPNAG00000018435	lsm12a	100	77.041	ENSNGAG00000001870	Lsm12	100	81.982	Nannospalax_galili
ENSPNAG00000018435	lsm12a	94	55.497	ENSNGAG00000015429	-	97	55.497	Nannospalax_galili
ENSPNAG00000018435	lsm12a	100	84.184	ENSNBRG00000006266	lsm12b	100	84.184	Neolamprologus_brichardi
ENSPNAG00000018435	lsm12a	100	77.041	ENSNLEG00000005580	-	100	81.982	Nomascus_leucogenys
ENSPNAG00000018435	lsm12a	85	76.506	ENSMEUG00000007501	-	100	76.506	Notamacropus_eugenii
ENSPNAG00000018435	lsm12a	100	77.041	ENSOPRG00000008552	LSM12	100	77.041	Ochotona_princeps
ENSPNAG00000018435	lsm12a	99	71.649	ENSODEG00000007886	-	73	71.649	Octodon_degus
ENSPNAG00000018435	lsm12a	97	77.895	ENSODEG00000017998	-	97	77.895	Octodon_degus
ENSPNAG00000018435	lsm12a	100	84.184	ENSONIG00000007933	lsm12b	100	84.184	Oreochromis_niloticus
ENSPNAG00000018435	lsm12a	100	75.377	ENSOCUG00000008566	-	100	75.377	Oryctolagus_cuniculus
ENSPNAG00000018435	lsm12a	99	74.359	ENSOCUG00000024823	-	100	74.359	Oryctolagus_cuniculus
ENSPNAG00000018435	lsm12a	99	73.846	ENSOCUG00000027889	-	100	73.846	Oryctolagus_cuniculus
ENSPNAG00000018435	lsm12a	99	74.359	ENSOCUG00000021254	-	100	74.359	Oryctolagus_cuniculus
ENSPNAG00000018435	lsm12a	100	84.694	ENSORLG00000011310	lsm12b	100	84.694	Oryzias_latipes
ENSPNAG00000018435	lsm12a	100	84.694	ENSORLG00020002060	lsm12b	92	84.694	Oryzias_latipes_hni
ENSPNAG00000018435	lsm12a	100	84.694	ENSORLG00015001647	lsm12b	92	84.694	Oryzias_latipes_hsok
ENSPNAG00000018435	lsm12a	100	85.714	ENSOMEG00000006184	lsm12b	92	85.714	Oryzias_melastigma
ENSPNAG00000018435	lsm12a	100	76.531	ENSOGAG00000010489	LSM12	100	76.531	Otolemur_garnettii
ENSPNAG00000018435	lsm12a	100	74.257	ENSOARG00000006589	LSM12	100	74.257	Ovis_aries
ENSPNAG00000018435	lsm12a	100	68.878	ENSPPAG00000034974	-	100	68.878	Pan_paniscus
ENSPNAG00000018435	lsm12a	100	77.041	ENSPPRG00000023420	LSM12	100	77.041	Panthera_pardus
ENSPNAG00000018435	lsm12a	78	78.431	ENSPTIG00000012704	-	82	78.431	Panthera_tigris_altaica
ENSPNAG00000018435	lsm12a	72	80.180	ENSPTIG00000014850	-	100	80.180	Panthera_tigris_altaica
ENSPNAG00000018435	lsm12a	100	77.041	ENSPTRG00000009261	LSM12	100	81.982	Pan_troglodytes
ENSPNAG00000018435	lsm12a	100	77.041	ENSPANG00000021315	-	100	81.982	Papio_anubis
ENSPNAG00000018435	lsm12a	100	86.224	ENSPKIG00000021058	lsm12b	100	86.224	Paramormyrops_kingsleyae
ENSPNAG00000018435	lsm12a	100	78.061	ENSPKIG00000017932	-	100	78.061	Paramormyrops_kingsleyae
ENSPNAG00000018435	lsm12a	100	84.694	ENSPMGG00000021344	lsm12b	100	84.694	Periophthalmus_magnuspinnatus
ENSPNAG00000018435	lsm12a	100	77.041	ENSPEMG00000012199	Lsm12	100	81.982	Peromyscus_maniculatus_bairdii
ENSPNAG00000018435	lsm12a	89	63.429	ENSPMAG00000005461	lsm12a	99	63.429	Petromyzon_marinus
ENSPNAG00000018435	lsm12a	100	76.531	ENSPCIG00000020244	LSM12	100	76.531	Phascolarctos_cinereus
ENSPNAG00000018435	lsm12a	100	84.184	ENSPFOG00000015930	lsm12b	100	84.184	Poecilia_formosa
ENSPNAG00000018435	lsm12a	100	84.184	ENSPLAG00000021089	lsm12b	100	84.184	Poecilia_latipinna
ENSPNAG00000018435	lsm12a	100	84.184	ENSPMEG00000012961	lsm12b	100	84.184	Poecilia_mexicana
ENSPNAG00000018435	lsm12a	87	86.550	ENSPREG00000010236	lsm12b	95	86.550	Poecilia_reticulata
ENSPNAG00000018435	lsm12a	100	77.041	ENSPPYG00000008344	LSM12	100	77.041	Pongo_abelii
ENSPNAG00000018435	lsm12a	81	77.358	ENSPCAG00000008790	LSM12	100	77.358	Procavia_capensis
ENSPNAG00000018435	lsm12a	100	77.041	ENSPCOG00000027951	LSM12	100	81.982	Propithecus_coquereli
ENSPNAG00000018435	lsm12a	100	77.551	ENSPVAG00000013706	LSM12	100	77.551	Pteropus_vampyrus
ENSPNAG00000018435	lsm12a	100	84.184	ENSPNYG00000003386	lsm12b	100	84.184	Pundamilia_nyererei
ENSPNAG00000018435	lsm12a	100	77.041	ENSRNOG00000020894	Lsm12	100	77.041	Rattus_norvegicus
ENSPNAG00000018435	lsm12a	100	77.041	ENSRBIG00000027910	LSM12	100	81.982	Rhinopithecus_bieti
ENSPNAG00000018435	lsm12a	100	77.041	ENSRROG00000045530	-	100	81.982	Rhinopithecus_roxellana
ENSPNAG00000018435	lsm12a	100	77.041	ENSSBOG00000025310	LSM12	100	81.982	Saimiri_boliviensis_boliviensis
ENSPNAG00000018435	lsm12a	81	76.582	ENSSHAG00000014914	LSM12	100	76.582	Sarcophilus_harrisii
ENSPNAG00000018435	lsm12a	100	85.204	ENSSFOG00015009612	lsm12	100	85.204	Scleropages_formosus
ENSPNAG00000018435	lsm12a	100	86.224	ENSSFOG00015020392	lsm12a	100	86.224	Scleropages_formosus
ENSPNAG00000018435	lsm12a	100	84.694	ENSSMAG00000008089	lsm12b	100	84.694	Scophthalmus_maximus
ENSPNAG00000018435	lsm12a	100	84.694	ENSSDUG00000012711	lsm12b	100	84.694	Seriola_dumerili
ENSPNAG00000018435	lsm12a	100	84.694	ENSSLDG00000007404	lsm12b	100	84.694	Seriola_lalandi_dorsalis
ENSPNAG00000018435	lsm12a	78	78.431	ENSSARG00000005537	LSM12	100	78.431	Sorex_araneus
ENSPNAG00000018435	lsm12a	100	78.061	ENSSPUG00000011984	LSM12	100	78.061	Sphenodon_punctatus
ENSPNAG00000018435	lsm12a	100	85.204	ENSSPAG00000017058	lsm12b	100	85.204	Stegastes_partitus
ENSPNAG00000018435	lsm12a	100	77.041	ENSSSCG00000032394	LSM12	100	77.041	Sus_scrofa
ENSPNAG00000018435	lsm12a	100	84.184	ENSTRUG00000007121	lsm12b	100	84.184	Takifugu_rubripes
ENSPNAG00000018435	lsm12a	100	83.673	ENSTNIG00000014436	lsm12b	100	83.673	Tetraodon_nigroviridis
ENSPNAG00000018435	lsm12a	100	73.469	ENSTBEG00000012392	-	100	73.469	Tupaia_belangeri
ENSPNAG00000018435	lsm12a	100	76.531	ENSTBEG00000012523	-	100	76.531	Tupaia_belangeri
ENSPNAG00000018435	lsm12a	100	77.041	ENSTTRG00000010433	LSM12	100	77.041	Tursiops_truncatus
ENSPNAG00000018435	lsm12a	100	77.041	ENSUAMG00000006313	LSM12	100	77.041	Ursus_americanus
ENSPNAG00000018435	lsm12a	81	75.949	ENSUMAG00000012987	LSM12	90	75.949	Ursus_maritimus
ENSPNAG00000018435	lsm12a	100	71.429	ENSVPAG00000011145	LSM12	100	71.429	Vicugna_pacos
ENSPNAG00000018435	lsm12a	100	77.041	ENSVVUG00000017581	LSM12	100	77.041	Vulpes_vulpes
ENSPNAG00000018435	lsm12a	82	61.250	ENSXETG00000003371	lsm12	77	61.250	Xenopus_tropicalis
ENSPNAG00000018435	lsm12a	100	84.694	ENSXCOG00000003994	lsm12b	100	84.694	Xiphophorus_couchianus
ENSPNAG00000018435	lsm12a	100	84.694	ENSXMAG00000020950	lsm12b	100	84.694	Xiphophorus_maculatus