EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000018779 (Gene tree)
Gene ID: 108429587
Gene Symbol: lsm6
Alias: zgc:92379
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 4320 bases
Position: chrKV575361.1:1072982-1077301
Accession: 108429587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000031435	LSM	PF01423.22	7.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000020398	-	394	XM_017701438	ENSPNAP00000031435	80 (aa)	XP_017556927	UPI00001A2729

Gene Model

Click here to download ENSPNAG00000018779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000018779's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000018779	lsm6	83	50.000	ENSPNAG00000019117	snrpf	78	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000018779	lsm6	100	96.250	ENSG00000164167	LSM6	100	96.250	Homo_sapiens
ENSPNAG00000018779	lsm6	100	97.500	ENSAPOG00000019832	lsm6	100	97.500	Acanthochromis_polyacanthus
ENSPNAG00000018779	lsm6	100	96.250	ENSAMEG00000016671	LSM6	100	96.250	Ailuropoda_melanoleuca
ENSPNAG00000018779	lsm6	100	97.500	ENSACIG00000016711	lsm6	100	97.500	Amphilophus_citrinellus
ENSPNAG00000018779	lsm6	100	97.500	ENSAOCG00000002110	lsm6	52	97.500	Amphiprion_ocellaris
ENSPNAG00000018779	lsm6	100	97.500	ENSAPEG00000023992	lsm6	100	97.500	Amphiprion_percula
ENSPNAG00000018779	lsm6	100	97.500	ENSATEG00000012610	lsm6	100	97.500	Anabas_testudineus
ENSPNAG00000018779	lsm6	96	96.104	ENSAPLG00000012594	LSM6	99	96.104	Anas_platyrhynchos
ENSPNAG00000018779	lsm6	100	96.250	ENSACAG00000004004	LSM6	100	96.250	Anolis_carolinensis
ENSPNAG00000018779	lsm6	100	96.250	ENSANAG00000030568	-	100	96.250	Aotus_nancymaae
ENSPNAG00000018779	lsm6	100	83.750	ENSANAG00000021839	-	100	83.750	Aotus_nancymaae
ENSPNAG00000018779	lsm6	100	97.500	ENSACLG00000025621	lsm6	100	97.500	Astatotilapia_calliptera
ENSPNAG00000018779	lsm6	100	100.000	ENSAMXG00000038738	lsm6	100	100.000	Astyanax_mexicanus
ENSPNAG00000018779	lsm6	100	96.250	ENSBTAG00000014060	LSM6	100	96.250	Bos_taurus
ENSPNAG00000018779	lsm6	100	90.000	ENSBTAG00000052085	-	100	90.000	Bos_taurus
ENSPNAG00000018779	lsm6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSPNAG00000018779	lsm6	100	96.250	ENSCJAG00000002482	LSM6	100	96.250	Callithrix_jacchus
ENSPNAG00000018779	lsm6	100	96.250	ENSCAFG00000007738	LSM6	100	96.250	Canis_familiaris
ENSPNAG00000018779	lsm6	100	96.250	ENSCAFG00020025902	LSM6	100	96.250	Canis_lupus_dingo
ENSPNAG00000018779	lsm6	100	81.250	ENSCHIG00000024198	-	95	81.250	Capra_hircus
ENSPNAG00000018779	lsm6	89	97.183	ENSCHIG00000012864	-	100	97.183	Capra_hircus
ENSPNAG00000018779	lsm6	100	96.250	ENSCHIG00000010334	-	100	96.250	Capra_hircus
ENSPNAG00000018779	lsm6	100	96.250	ENSTSYG00000026972	LSM6	100	96.250	Carlito_syrichta
ENSPNAG00000018779	lsm6	80	89.062	ENSTSYG00000012759	-	84	89.062	Carlito_syrichta
ENSPNAG00000018779	lsm6	100	96.250	ENSCAPG00000008104	LSM6	100	96.250	Cavia_aperea
ENSPNAG00000018779	lsm6	81	93.846	ENSCAPG00000011179	-	100	93.846	Cavia_aperea
ENSPNAG00000018779	lsm6	100	96.250	ENSCPOG00000032655	LSM6	100	96.250	Cavia_porcellus
ENSPNAG00000018779	lsm6	99	94.937	ENSCCAG00000020665	-	99	94.937	Cebus_capucinus
ENSPNAG00000018779	lsm6	100	96.250	ENSCCAG00000036437	LSM6	100	96.250	Cebus_capucinus
ENSPNAG00000018779	lsm6	100	96.250	ENSCATG00000002770	-	100	96.250	Cercocebus_atys
ENSPNAG00000018779	lsm6	100	73.750	ENSCATG00000038799	-	100	73.750	Cercocebus_atys
ENSPNAG00000018779	lsm6	100	96.250	ENSCLAG00000005495	LSM6	100	96.250	Chinchilla_lanigera
ENSPNAG00000018779	lsm6	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSPNAG00000018779	lsm6	100	96.250	ENSCSAG00000003421	LSM6	100	96.250	Chlorocebus_sabaeus
ENSPNAG00000018779	lsm6	100	76.250	ENSCHOG00000003420	LSM6	100	76.250	Choloepus_hoffmanni
ENSPNAG00000018779	lsm6	100	96.250	ENSCPBG00000027472	LSM6	84	96.250	Chrysemys_picta_bellii
ENSPNAG00000018779	lsm6	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSPNAG00000018779	lsm6	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSPNAG00000018779	lsm6	100	96.250	ENSCANG00000041263	-	100	96.250	Colobus_angolensis_palliatus
ENSPNAG00000018779	lsm6	100	96.250	ENSCANG00000006849	-	100	96.250	Colobus_angolensis_palliatus
ENSPNAG00000018779	lsm6	100	70.000	ENSCANG00000035214	-	100	70.000	Colobus_angolensis_palliatus
ENSPNAG00000018779	lsm6	100	96.250	ENSCGRG00001017142	Lsm6	100	96.250	Cricetulus_griseus_chok1gshd
ENSPNAG00000018779	lsm6	100	96.250	ENSCGRG00000008320	Lsm6	100	96.250	Cricetulus_griseus_crigri
ENSPNAG00000018779	lsm6	100	97.500	ENSCSEG00000000423	lsm6	100	97.500	Cynoglossus_semilaevis
ENSPNAG00000018779	lsm6	100	97.500	ENSCVAG00000001592	lsm6	100	97.500	Cyprinodon_variegatus
ENSPNAG00000018779	lsm6	100	100.000	ENSDARG00000036995	lsm6	100	100.000	Danio_rerio
ENSPNAG00000018779	lsm6	86	97.101	ENSDNOG00000040186	-	74	97.101	Dasypus_novemcinctus
ENSPNAG00000018779	lsm6	100	95.000	ENSDNOG00000044848	-	100	95.000	Dasypus_novemcinctus
ENSPNAG00000018779	lsm6	100	96.250	ENSDORG00000000933	Lsm6	100	96.250	Dipodomys_ordii
ENSPNAG00000018779	lsm6	96	81.818	FBgn0034564	CG9344	97	81.818	Drosophila_melanogaster
ENSPNAG00000018779	lsm6	60	93.750	ENSETEG00000013098	LSM6	100	93.750	Echinops_telfairi
ENSPNAG00000018779	lsm6	100	95.000	ENSEBUG00000017073	lsm6	100	95.000	Eptatretus_burgeri
ENSPNAG00000018779	lsm6	86	97.101	ENSEASG00005001533	LSM6	72	97.101	Equus_asinus_asinus
ENSPNAG00000018779	lsm6	100	96.250	ENSECAG00000021036	LSM6	100	96.250	Equus_caballus
ENSPNAG00000018779	lsm6	99	68.354	ENSEEUG00000002101	LSM6	100	68.354	Erinaceus_europaeus
ENSPNAG00000018779	lsm6	100	100.000	ENSELUG00000014301	LSM6	100	100.000	Esox_lucius
ENSPNAG00000018779	lsm6	100	96.250	ENSFCAG00000003047	LSM6	100	96.250	Felis_catus
ENSPNAG00000018779	lsm6	100	96.250	ENSFALG00000005509	LSM6	92	96.250	Ficedula_albicollis
ENSPNAG00000018779	lsm6	100	85.000	ENSFDAG00000019073	-	100	85.000	Fukomys_damarensis
ENSPNAG00000018779	lsm6	100	96.250	ENSFDAG00000020913	-	100	96.250	Fukomys_damarensis
ENSPNAG00000018779	lsm6	100	97.500	ENSFHEG00000007948	lsm6	100	97.500	Fundulus_heteroclitus
ENSPNAG00000018779	lsm6	100	97.500	ENSGMOG00000015550	lsm6	100	97.500	Gadus_morhua
ENSPNAG00000018779	lsm6	100	96.250	ENSGALG00000009985	LSM6	100	96.250	Gallus_gallus
ENSPNAG00000018779	lsm6	100	97.500	ENSGAFG00000017763	lsm6	100	97.500	Gambusia_affinis
ENSPNAG00000018779	lsm6	99	98.734	ENSGACG00000017223	lsm6	99	98.734	Gasterosteus_aculeatus
ENSPNAG00000018779	lsm6	100	96.250	ENSGAGG00000020980	LSM6	100	96.250	Gopherus_agassizii
ENSPNAG00000018779	lsm6	100	96.250	ENSGGOG00000001310	LSM6	100	96.250	Gorilla_gorilla
ENSPNAG00000018779	lsm6	100	97.500	ENSHBUG00000008618	lsm6	100	97.500	Haplochromis_burtoni
ENSPNAG00000018779	lsm6	100	96.250	ENSHGLG00000000205	LSM6	100	96.250	Heterocephalus_glaber_female
ENSPNAG00000018779	lsm6	100	96.250	ENSHGLG00100014341	LSM6	100	96.250	Heterocephalus_glaber_male
ENSPNAG00000018779	lsm6	100	97.500	ENSHCOG00000005591	lsm6	100	97.500	Hippocampus_comes
ENSPNAG00000018779	lsm6	100	98.750	ENSIPUG00000004508	lsm6	100	98.750	Ictalurus_punctatus
ENSPNAG00000018779	lsm6	100	96.250	ENSSTOG00000002678	LSM6	100	96.250	Ictidomys_tridecemlineatus
ENSPNAG00000018779	lsm6	100	86.250	ENSJJAG00000011211	-	100	86.250	Jaculus_jaculus
ENSPNAG00000018779	lsm6	96	76.623	ENSJJAG00000016942	-	97	76.623	Jaculus_jaculus
ENSPNAG00000018779	lsm6	100	96.250	ENSJJAG00000013845	-	100	96.250	Jaculus_jaculus
ENSPNAG00000018779	lsm6	100	97.500	ENSKMAG00000004105	lsm6	100	97.500	Kryptolebias_marmoratus
ENSPNAG00000018779	lsm6	100	97.500	ENSLBEG00000018441	lsm6	100	97.500	Labrus_bergylta
ENSPNAG00000018779	lsm6	100	96.250	ENSLACG00000006937	LSM6	100	96.250	Latimeria_chalumnae
ENSPNAG00000018779	lsm6	100	100.000	ENSLOCG00000008852	lsm6	100	100.000	Lepisosteus_oculatus
ENSPNAG00000018779	lsm6	100	98.750	ENSLOCG00000017683	-	100	98.750	Lepisosteus_oculatus
ENSPNAG00000018779	lsm6	100	96.250	ENSLAFG00000001952	LSM6	100	96.250	Loxodonta_africana
ENSPNAG00000018779	lsm6	100	96.250	ENSMFAG00000033073	LSM6	100	96.250	Macaca_fascicularis
ENSPNAG00000018779	lsm6	100	96.250	ENSMNEG00000034820	-	100	96.250	Macaca_nemestrina
ENSPNAG00000018779	lsm6	100	75.000	ENSMNEG00000040412	-	100	75.000	Macaca_nemestrina
ENSPNAG00000018779	lsm6	100	96.250	ENSMLEG00000035153	LSM6	100	96.250	Mandrillus_leucophaeus
ENSPNAG00000018779	lsm6	100	97.500	ENSMAMG00000014029	lsm6	100	97.500	Mastacembelus_armatus
ENSPNAG00000018779	lsm6	100	97.500	ENSMZEG00005009146	lsm6	100	97.500	Maylandia_zebra
ENSPNAG00000018779	lsm6	100	96.250	ENSMGAG00000003802	LSM6	100	96.250	Meleagris_gallopavo
ENSPNAG00000018779	lsm6	100	96.250	ENSMAUG00000014938	Lsm6	100	96.250	Mesocricetus_auratus
ENSPNAG00000018779	lsm6	98	88.462	ENSMICG00000047411	-	92	88.462	Microcebus_murinus
ENSPNAG00000018779	lsm6	100	96.250	ENSMICG00000042599	LSM6	100	96.250	Microcebus_murinus
ENSPNAG00000018779	lsm6	100	96.250	ENSMOCG00000020049	Lsm6	100	96.250	Microtus_ochrogaster
ENSPNAG00000018779	lsm6	100	91.250	ENSMMOG00000007379	-	100	91.250	Mola_mola
ENSPNAG00000018779	lsm6	100	97.500	ENSMMOG00000005470	lsm6	100	97.500	Mola_mola
ENSPNAG00000018779	lsm6	100	96.250	ENSMODG00000000526	LSM6	100	96.250	Monodelphis_domestica
ENSPNAG00000018779	lsm6	100	97.500	ENSMALG00000002419	lsm6	100	97.500	Monopterus_albus
ENSPNAG00000018779	lsm6	100	96.250	MGP_CAROLIEiJ_G0031245	Lsm6	100	96.250	Mus_caroli
ENSPNAG00000018779	lsm6	100	96.250	ENSMUSG00000031683	Lsm6	100	96.250	Mus_musculus
ENSPNAG00000018779	lsm6	100	96.250	MGP_PahariEiJ_G0022851	Lsm6	100	96.250	Mus_pahari
ENSPNAG00000018779	lsm6	100	96.250	MGP_SPRETEiJ_G0032365	Lsm6	100	96.250	Mus_spretus
ENSPNAG00000018779	lsm6	99	96.203	ENSMPUG00000006936	LSM6	92	96.203	Mustela_putorius_furo
ENSPNAG00000018779	lsm6	100	96.250	ENSMLUG00000026355	LSM6	100	96.250	Myotis_lucifugus
ENSPNAG00000018779	lsm6	100	96.250	ENSNGAG00000019116	Lsm6	100	96.250	Nannospalax_galili
ENSPNAG00000018779	lsm6	100	97.500	ENSNBRG00000004887	lsm6	100	97.500	Neolamprologus_brichardi
ENSPNAG00000018779	lsm6	100	96.250	ENSNLEG00000005584	LSM6	100	96.250	Nomascus_leucogenys
ENSPNAG00000018779	lsm6	100	95.000	ENSOPRG00000011199	LSM6	100	95.000	Ochotona_princeps
ENSPNAG00000018779	lsm6	100	95.000	ENSODEG00000019419	-	100	95.000	Octodon_degus
ENSPNAG00000018779	lsm6	96	85.714	ENSODEG00000018684	-	100	85.714	Octodon_degus
ENSPNAG00000018779	lsm6	100	95.000	ENSODEG00000002307	-	100	95.000	Octodon_degus
ENSPNAG00000018779	lsm6	100	93.750	ENSODEG00000020420	-	100	93.750	Octodon_degus
ENSPNAG00000018779	lsm6	100	97.500	ENSONIG00000010005	lsm6	100	97.500	Oreochromis_niloticus
ENSPNAG00000018779	lsm6	98	70.513	ENSOANG00000006894	-	100	70.513	Ornithorhynchus_anatinus
ENSPNAG00000018779	lsm6	98	70.513	ENSOANG00000006895	-	100	70.513	Ornithorhynchus_anatinus
ENSPNAG00000018779	lsm6	100	96.250	ENSORLG00000024158	lsm6	100	96.250	Oryzias_latipes
ENSPNAG00000018779	lsm6	100	96.250	ENSORLG00020017383	lsm6	100	96.250	Oryzias_latipes_hni
ENSPNAG00000018779	lsm6	100	96.250	ENSORLG00015016903	lsm6	100	96.250	Oryzias_latipes_hsok
ENSPNAG00000018779	lsm6	100	97.500	ENSOMEG00000000074	lsm6	100	97.500	Oryzias_melastigma
ENSPNAG00000018779	lsm6	100	96.250	ENSOGAG00000033153	-	100	96.250	Otolemur_garnettii
ENSPNAG00000018779	lsm6	100	96.250	ENSOGAG00000026665	-	100	96.250	Otolemur_garnettii
ENSPNAG00000018779	lsm6	86	97.101	ENSOARG00000008509	-	88	97.101	Ovis_aries
ENSPNAG00000018779	lsm6	99	89.873	ENSOARG00000011641	-	92	89.873	Ovis_aries
ENSPNAG00000018779	lsm6	100	96.250	ENSPPAG00000037929	LSM6	100	96.250	Pan_paniscus
ENSPNAG00000018779	lsm6	100	96.250	ENSPPRG00000012806	LSM6	100	96.250	Panthera_pardus
ENSPNAG00000018779	lsm6	100	96.250	ENSPTIG00000019769	LSM6	100	96.250	Panthera_tigris_altaica
ENSPNAG00000018779	lsm6	100	96.250	ENSPTRG00000016488	LSM6	100	96.250	Pan_troglodytes
ENSPNAG00000018779	lsm6	100	96.250	ENSPANG00000006552	LSM6	100	96.250	Papio_anubis
ENSPNAG00000018779	lsm6	100	100.000	ENSPKIG00000016176	lsm6	100	100.000	Paramormyrops_kingsleyae
ENSPNAG00000018779	lsm6	100	96.250	ENSPSIG00000016942	LSM6	100	96.250	Pelodiscus_sinensis
ENSPNAG00000018779	lsm6	100	97.500	ENSPMGG00000018004	lsm6	100	97.500	Periophthalmus_magnuspinnatus
ENSPNAG00000018779	lsm6	100	96.250	ENSPEMG00000012410	Lsm6	100	96.250	Peromyscus_maniculatus_bairdii
ENSPNAG00000018779	lsm6	100	95.000	ENSPMAG00000006949	lsm6	100	95.000	Petromyzon_marinus
ENSPNAG00000018779	lsm6	100	96.250	ENSPCIG00000023469	LSM6	80	97.101	Phascolarctos_cinereus
ENSPNAG00000018779	lsm6	100	97.500	ENSPFOG00000008881	lsm6	100	97.500	Poecilia_formosa
ENSPNAG00000018779	lsm6	100	97.500	ENSPLAG00000003202	lsm6	100	97.500	Poecilia_latipinna
ENSPNAG00000018779	lsm6	100	97.500	ENSPMEG00000004000	lsm6	100	97.500	Poecilia_mexicana
ENSPNAG00000018779	lsm6	100	97.500	ENSPREG00000023235	lsm6	100	97.500	Poecilia_reticulata
ENSPNAG00000018779	lsm6	100	96.250	ENSPPYG00000015105	LSM6	100	96.250	Pongo_abelii
ENSPNAG00000018779	lsm6	100	96.250	ENSPCOG00000013899	LSM6	100	96.250	Propithecus_coquereli
ENSPNAG00000018779	lsm6	100	97.500	ENSPNYG00000012614	lsm6	100	97.500	Pundamilia_nyererei
ENSPNAG00000018779	lsm6	100	96.250	ENSRNOG00000049370	LOC100360750	100	96.250	Rattus_norvegicus
ENSPNAG00000018779	lsm6	100	96.250	ENSRNOG00000030374	Lsm6	100	96.250	Rattus_norvegicus
ENSPNAG00000018779	lsm6	100	96.250	ENSRBIG00000027878	LSM6	100	96.250	Rhinopithecus_bieti
ENSPNAG00000018779	lsm6	100	96.250	ENSRROG00000024868	LSM6	100	96.250	Rhinopithecus_roxellana
ENSPNAG00000018779	lsm6	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSPNAG00000018779	lsm6	100	70.000	ENSSBOG00000028103	-	100	70.000	Saimiri_boliviensis_boliviensis
ENSPNAG00000018779	lsm6	100	96.250	ENSSBOG00000021229	-	100	96.250	Saimiri_boliviensis_boliviensis
ENSPNAG00000018779	lsm6	100	100.000	ENSSFOG00015016480	lsm6	100	100.000	Scleropages_formosus
ENSPNAG00000018779	lsm6	100	97.500	ENSSMAG00000004550	lsm6	100	97.500	Scophthalmus_maximus
ENSPNAG00000018779	lsm6	100	97.500	ENSSDUG00000020459	lsm6	50	97.500	Seriola_dumerili
ENSPNAG00000018779	lsm6	100	97.500	ENSSLDG00000020533	lsm6	83	97.500	Seriola_lalandi_dorsalis
ENSPNAG00000018779	lsm6	86	98.551	ENSSLDG00000004136	-	59	98.551	Seriola_lalandi_dorsalis
ENSPNAG00000018779	lsm6	60	93.750	ENSSARG00000000689	LSM6	100	93.750	Sorex_araneus
ENSPNAG00000018779	lsm6	100	96.250	ENSSPUG00000008657	LSM6	100	96.250	Sphenodon_punctatus
ENSPNAG00000018779	lsm6	100	97.500	ENSSPAG00000003246	lsm6	100	97.500	Stegastes_partitus
ENSPNAG00000018779	lsm6	100	96.250	ENSSSCG00000035973	LSM6	100	96.250	Sus_scrofa
ENSPNAG00000018779	lsm6	100	96.250	ENSTGUG00000002663	LSM6	100	96.250	Taeniopygia_guttata
ENSPNAG00000018779	lsm6	100	97.500	ENSTRUG00000023398	lsm6	100	97.500	Takifugu_rubripes
ENSPNAG00000018779	lsm6	100	97.500	ENSTNIG00000017725	lsm6	100	97.500	Tetraodon_nigroviridis
ENSPNAG00000018779	lsm6	100	96.250	ENSTTRG00000004609	LSM6	100	96.250	Tursiops_truncatus
ENSPNAG00000018779	lsm6	98	88.462	ENSUAMG00000014213	LSM6	64	88.462	Ursus_americanus
ENSPNAG00000018779	lsm6	98	88.462	ENSUMAG00000015727	LSM6	64	88.462	Ursus_maritimus
ENSPNAG00000018779	lsm6	100	96.250	ENSVPAG00000006922	LSM6	100	96.250	Vicugna_pacos
ENSPNAG00000018779	lsm6	100	96.250	ENSVVUG00000009254	LSM6	68	96.250	Vulpes_vulpes
ENSPNAG00000018779	lsm6	100	96.250	ENSXETG00000023683	lsm6	100	96.250	Xenopus_tropicalis
ENSPNAG00000018779	lsm6	100	97.500	ENSXMAG00000009606	lsm6	100	97.500	Xiphophorus_maculatus