EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000019138 (Gene tree)
Gene ID: 108428349
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 24221 bases
Position: chrKV575346.1:3423732-3447952
Accession: 108428349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000013318	RRM_1	PF00076.22	2.1e-29	1	2
ENSPNAP00000013318	RRM_1	PF00076.22	2.1e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000020857	-	2345	XM_017699283	ENSPNAP00000013318	320 (aa)	XP_017554772	UPI00081496B3

Gene Model

Click here to download ENSPNAG00000019138's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000019138's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000019138	trnau1apb	54	30.682	ENSPNAG00000003272	tial1	59	30.682
ENSPNAG00000019138	trnau1apb	98	40.994	ENSPNAG00000024905	trnau1apa	95	39.432
ENSPNAG00000019138	trnau1apb	58	30.526	ENSPNAG00000016449	tia1l	77	30.114

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000019138	trnau1apb	98	63.407	ENSAPOG00000010086	trnau1apb	99	64.444	Acanthochromis_polyacanthus
ENSPNAG00000019138	trnau1apb	98	66.563	ENSACIG00000001863	trnau1apb	99	65.015	Amphilophus_citrinellus
ENSPNAG00000019138	trnau1apb	98	67.552	ENSAOCG00000011891	trnau1apb	99	65.982	Amphiprion_ocellaris
ENSPNAG00000019138	trnau1apb	98	64.072	ENSAPEG00000008029	trnau1apb	99	67.062	Amphiprion_percula
ENSPNAG00000019138	trnau1apb	98	68.047	ENSATEG00000002196	trnau1apb	99	65.982	Anabas_testudineus
ENSPNAG00000019138	trnau1apb	98	62.798	ENSACLG00000003016	trnau1apb	99	64.458	Astatotilapia_calliptera
ENSPNAG00000019138	trnau1apb	98	93.333	ENSAMXG00000001805	trnau1apb	99	92.063	Astyanax_mexicanus
ENSPNAG00000019138	trnau1apb	96	64.955	ENSCSEG00000018215	trnau1apb	97	65.179	Cynoglossus_semilaevis
ENSPNAG00000019138	trnau1apb	93	59.878	ENSCVAG00000017866	trnau1apb	99	60.182	Cyprinodon_variegatus
ENSPNAG00000019138	trnau1apb	100	82.866	ENSDARG00000056475	trnau1apb	100	84.424	Danio_rerio
ENSPNAG00000019138	trnau1apb	98	79.245	ENSELUG00000016683	trnau1apb	100	79.321	Esox_lucius
ENSPNAG00000019138	trnau1apb	98	62.609	ENSFHEG00000001267	trnau1apb	99	62.319	Fundulus_heteroclitus
ENSPNAG00000019138	trnau1apb	98	62.840	ENSGMOG00000001160	trnau1apb	99	58.824	Gadus_morhua
ENSPNAG00000019138	trnau1apb	56	84.358	ENSGAFG00000006770	trnau1apb	99	63.950	Gambusia_affinis
ENSPNAG00000019138	trnau1apb	98	67.173	ENSGACG00000014944	trnau1apb	99	64.970	Gasterosteus_aculeatus
ENSPNAG00000019138	trnau1apb	68	49.315	ENSGAGG00000022384	-	77	47.032	Gopherus_agassizii
ENSPNAG00000019138	trnau1apb	98	67.062	ENSHBUG00000018944	trnau1apb	99	64.706	Haplochromis_burtoni
ENSPNAG00000019138	trnau1apb	70	71.429	ENSHCOG00000011350	trnau1apb	81	66.016	Hippocampus_comes
ENSPNAG00000019138	trnau1apb	98	92.357	ENSIPUG00000008843	tsp1l	99	92.357	Ictalurus_punctatus
ENSPNAG00000019138	trnau1apb	67	75.909	ENSKMAG00000010082	trnau1apb	99	63.557	Kryptolebias_marmoratus
ENSPNAG00000019138	trnau1apb	98	67.568	ENSLBEG00000020480	trnau1apb	99	64.881	Labrus_bergylta
ENSPNAG00000019138	trnau1apb	98	66.349	ENSLOCG00000013175	trnau1apb	98	65.397	Lepisosteus_oculatus
ENSPNAG00000019138	trnau1apb	99	66.568	ENSMAMG00000012192	trnau1apb	99	64.809	Mastacembelus_armatus
ENSPNAG00000019138	trnau1apb	98	67.062	ENSMZEG00005014852	trnau1apb	99	64.706	Maylandia_zebra
ENSPNAG00000019138	trnau1apb	70	47.577	ENSMGAG00000003234	-	100	45.133	Meleagris_gallopavo
ENSPNAG00000019138	trnau1apb	96	57.602	ENSMMOG00000021521	trnau1apb	100	57.391	Mola_mola
ENSPNAG00000019138	trnau1apb	98	61.635	ENSMALG00000003772	trnau1apb	99	63.694	Monopterus_albus
ENSPNAG00000019138	trnau1apb	97	66.871	ENSNBRG00000000751	trnau1apb	99	62.006	Neolamprologus_brichardi
ENSPNAG00000019138	trnau1apb	97	64.890	ENSONIG00000016639	trnau1apb	99	61.755	Oreochromis_niloticus
ENSPNAG00000019138	trnau1apb	62	81.000	ENSORLG00000013265	trnau1apb	99	65.507	Oryzias_latipes
ENSPNAG00000019138	trnau1apb	98	66.765	ENSORLG00020004464	trnau1apb	99	65.889	Oryzias_latipes_hni
ENSPNAG00000019138	trnau1apb	98	66.765	ENSORLG00015021098	trnau1apb	99	65.889	Oryzias_latipes_hsok
ENSPNAG00000019138	trnau1apb	62	80.000	ENSOMEG00000016531	trnau1apb	99	66.377	Oryzias_melastigma
ENSPNAG00000019138	trnau1apb	100	72.508	ENSPKIG00000007995	trnau1apb	100	72.973	Paramormyrops_kingsleyae
ENSPNAG00000019138	trnau1apb	68	48.624	ENSPSIG00000004189	-	77	47.489	Pelodiscus_sinensis
ENSPNAG00000019138	trnau1apb	98	59.936	ENSPMGG00000018509	trnau1apb	73	84.916	Periophthalmus_magnuspinnatus
ENSPNAG00000019138	trnau1apb	98	65.528	ENSPFOG00000003938	trnau1apb	99	63.692	Poecilia_formosa
ENSPNAG00000019138	trnau1apb	98	61.988	ENSPLAG00000015480	trnau1apb	99	60.286	Poecilia_latipinna
ENSPNAG00000019138	trnau1apb	98	61.988	ENSPMEG00000012743	trnau1apb	99	60.286	Poecilia_mexicana
ENSPNAG00000019138	trnau1apb	98	62.757	ENSPREG00000015035	trnau1apb	99	61.628	Poecilia_reticulata
ENSPNAG00000019138	trnau1apb	98	60.417	ENSPNYG00000012127	trnau1apb	99	62.048	Pundamilia_nyererei
ENSPNAG00000019138	trnau1apb	98	75.000	ENSSFOG00015014158	trnau1apb	98	73.171	Scleropages_formosus
ENSPNAG00000019138	trnau1apb	97	66.163	ENSSMAG00000001745	trnau1apb	98	63.798	Scophthalmus_maximus
ENSPNAG00000019138	trnau1apb	98	66.864	ENSSDUG00000011109	trnau1apb	99	65.689	Seriola_dumerili
ENSPNAG00000019138	trnau1apb	98	66.864	ENSSLDG00000012947	trnau1apb	99	65.396	Seriola_lalandi_dorsalis
ENSPNAG00000019138	trnau1apb	68	38.462	ENSSPUG00000016701	-	82	36.032	Sphenodon_punctatus
ENSPNAG00000019138	trnau1apb	98	68.639	ENSSPAG00000006917	trnau1apb	99	66.862	Stegastes_partitus
ENSPNAG00000019138	trnau1apb	98	63.018	ENSTRUG00000008608	trnau1apb	99	60.819	Takifugu_rubripes
ENSPNAG00000019138	trnau1apb	97	59.295	ENSTNIG00000000916	trnau1apb	99	55.911	Tetraodon_nigroviridis
ENSPNAG00000019138	trnau1apb	92	61.356	ENSXCOG00000007974	trnau1apb	93	59.736	Xiphophorus_couchianus
ENSPNAG00000019138	trnau1apb	98	62.463	ENSXMAG00000029918	trnau1apb	99	59.885	Xiphophorus_maculatus