EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000019223 (Gene tree)
Gene ID: 108436173
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 20481 bases
Position: chrKV575488.1:166740-187220
Accession: 108436173
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000013255	RNA_pol_Rpb1_5	PF04998.17	1.1e-99	1	1
ENSPNAP00000013292	RNA_pol_Rpb1_5	PF04998.17	1.3e-99	1	1
ENSPNAP00000013292	RNA_pol_Rpb1_4	PF05000.17	1e-21	1	1
ENSPNAP00000013255	RNA_pol_Rpb1_4	PF05000.17	1.2e-21	1	1
ENSPNAP00000013255	RNA_pol_Rpb1_2	PF00623.20	4.8e-69	1	1
ENSPNAP00000013292	RNA_pol_Rpb1_2	PF00623.20	5e-69	1	1
ENSPNAP00000013255	RNA_pol_Rpb1_3	PF04983.18	4.6e-37	1	1
ENSPNAP00000013292	RNA_pol_Rpb1_3	PF04983.18	5.9e-37	1	1
ENSPNAP00000013292	RNA_pol_Rpb1_1	PF04997.12	3.6e-26	1	1
ENSPNAP00000013255	RNA_pol_Rpb1_1	PF04997.12	3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000036848	-	4779	-	ENSPNAP00000013255	1592 (aa)	-	-
ENSPNAT00000036865	-	6958	XM_017712501	ENSPNAP00000013292	1701 (aa)	XP_017567990	UPI0008149098

Gene Model

Click here to download ENSPNAG00000019223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000019223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000019223	polr1a	58	62.687	ENSPNAG00000006629	polr3a	67	62.687
ENSPNAG00000019223	polr1a	79	30.875	ENSPNAG00000011237	polr2a	57	32.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000019223	polr1a	99	67.551	ENSG00000068654	POLR1A	100	67.244	Homo_sapiens
ENSPNAG00000019223	polr1a	70	73.512	ENSAPOG00000017945	polr1a	99	73.512	Acanthochromis_polyacanthus
ENSPNAG00000019223	polr1a	99	68.493	ENSAMEG00000005807	POLR1A	100	70.133	Ailuropoda_melanoleuca
ENSPNAG00000019223	polr1a	100	71.665	ENSACIG00000022147	polr1a	100	71.367	Amphilophus_citrinellus
ENSPNAG00000019223	polr1a	100	72.077	ENSAOCG00000017336	polr1a	100	74.079	Amphiprion_ocellaris
ENSPNAG00000019223	polr1a	100	71.960	ENSAPEG00000016105	polr1a	100	72.037	Amphiprion_percula
ENSPNAG00000019223	polr1a	100	72.839	ENSATEG00000016773	polr1a	100	72.956	Anabas_testudineus
ENSPNAG00000019223	polr1a	89	69.194	ENSAPLG00000013871	POLR1A	99	69.090	Anas_platyrhynchos
ENSPNAG00000019223	polr1a	99	67.334	ENSACAG00000012141	POLR1A	99	65.425	Anolis_carolinensis
ENSPNAG00000019223	polr1a	100	66.899	ENSANAG00000033927	POLR1A	100	66.493	Aotus_nancymaae
ENSPNAG00000019223	polr1a	100	69.124	ENSACLG00000020541	polr1a	100	68.682	Astatotilapia_calliptera
ENSPNAG00000019223	polr1a	99	68.381	ENSBTAG00000006481	POLR1A	100	66.493	Bos_taurus
ENSPNAG00000019223	polr1a	99	38.345	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSPNAG00000019223	polr1a	99	68.489	ENSCJAG00000019547	POLR1A	100	67.014	Callithrix_jacchus
ENSPNAG00000019223	polr1a	99	69.046	ENSCAFG00000007613	POLR1A	100	66.860	Canis_familiaris
ENSPNAG00000019223	polr1a	99	69.046	ENSCAFG00020014752	POLR1A	100	66.763	Canis_lupus_dingo
ENSPNAG00000019223	polr1a	99	68.672	ENSCHIG00000018204	POLR1A	100	66.356	Capra_hircus
ENSPNAG00000019223	polr1a	100	66.397	ENSTSYG00000002761	POLR1A	100	66.725	Carlito_syrichta
ENSPNAG00000019223	polr1a	97	63.947	ENSCAPG00000010132	POLR1A	100	64.149	Cavia_aperea
ENSPNAG00000019223	polr1a	100	67.073	ENSCPOG00000012350	POLR1A	100	67.266	Cavia_porcellus
ENSPNAG00000019223	polr1a	99	68.626	ENSCCAG00000019839	POLR1A	100	67.014	Cebus_capucinus
ENSPNAG00000019223	polr1a	99	67.755	ENSCATG00000029786	POLR1A	100	67.225	Cercocebus_atys
ENSPNAG00000019223	polr1a	99	68.668	ENSCLAG00000005187	POLR1A	100	66.165	Chinchilla_lanigera
ENSPNAG00000019223	polr1a	99	68.836	ENSCSAG00000016251	POLR1A	100	67.225	Chlorocebus_sabaeus
ENSPNAG00000019223	polr1a	99	69.720	ENSCPBG00000001115	POLR1A	99	68.520	Chrysemys_picta_bellii
ENSPNAG00000019223	polr1a	94	54.949	ENSCSAVG00000007184	-	99	46.297	Ciona_savignyi
ENSPNAG00000019223	polr1a	100	64.641	ENSCANG00000031785	POLR1A	100	64.645	Colobus_angolensis_palliatus
ENSPNAG00000019223	polr1a	96	67.604	ENSCGRG00001006651	Polr1a	100	66.930	Cricetulus_griseus_chok1gshd
ENSPNAG00000019223	polr1a	64	67.670	ENSCGRG00000010834	Polr1a	100	66.570	Cricetulus_griseus_crigri
ENSPNAG00000019223	polr1a	100	67.993	ENSCSEG00000020190	polr1a	100	67.759	Cynoglossus_semilaevis
ENSPNAG00000019223	polr1a	100	68.448	ENSCVAG00000020941	polr1a	100	69.240	Cyprinodon_variegatus
ENSPNAG00000019223	polr1a	100	77.066	ENSDARG00000098375	polr1a	100	76.937	Danio_rerio
ENSPNAG00000019223	polr1a	100	63.605	ENSDNOG00000010829	POLR1A	100	63.375	Dasypus_novemcinctus
ENSPNAG00000019223	polr1a	100	67.615	ENSDORG00000008298	Polr1a	100	67.615	Dipodomys_ordii
ENSPNAG00000019223	polr1a	75	50.142	FBgn0019938	RpI1	99	43.644	Drosophila_melanogaster
ENSPNAG00000019223	polr1a	71	84.375	ENSETEG00000000412	-	71	84.375	Echinops_telfairi
ENSPNAG00000019223	polr1a	87	49.324	ENSEBUG00000005667	-	95	54.601	Eptatretus_burgeri
ENSPNAG00000019223	polr1a	99	68.741	ENSEASG00005001625	POLR1A	100	66.917	Equus_asinus_asinus
ENSPNAG00000019223	polr1a	94	75.250	ENSECAG00000030510	-	96	75.250	Equus_caballus
ENSPNAG00000019223	polr1a	94	75.250	ENSECAG00000036306	-	96	75.250	Equus_caballus
ENSPNAG00000019223	polr1a	94	75.250	ENSECAG00000010092	POLR1A	96	75.250	Equus_caballus
ENSPNAG00000019223	polr1a	85	77.837	ENSEEUG00000000676	POLR1A	85	77.837	Erinaceus_europaeus
ENSPNAG00000019223	polr1a	100	76.068	ENSELUG00000012769	polr1a	99	76.009	Esox_lucius
ENSPNAG00000019223	polr1a	99	68.288	ENSFCAG00000008966	POLR1A	100	66.589	Felis_catus
ENSPNAG00000019223	polr1a	99	68.664	ENSFALG00000010082	POLR1A	99	67.197	Ficedula_albicollis
ENSPNAG00000019223	polr1a	99	68.651	ENSFDAG00000013726	POLR1A	100	66.957	Fukomys_damarensis
ENSPNAG00000019223	polr1a	100	67.838	ENSFHEG00000005996	polr1a	100	67.426	Fundulus_heteroclitus
ENSPNAG00000019223	polr1a	100	66.831	ENSGMOG00000002230	polr1a	100	66.398	Gadus_morhua
ENSPNAG00000019223	polr1a	89	67.030	ENSGALG00000038160	-	99	65.026	Gallus_gallus
ENSPNAG00000019223	polr1a	100	69.573	ENSGAFG00000015266	polr1a	100	69.573	Gambusia_affinis
ENSPNAG00000019223	polr1a	98	72.727	ENSGACG00000018791	polr1a	100	70.057	Gasterosteus_aculeatus
ENSPNAG00000019223	polr1a	92	67.079	ENSGAGG00000004984	-	95	74.362	Gopherus_agassizii
ENSPNAG00000019223	polr1a	99	67.891	ENSGGOG00000001788	POLR1A	100	67.475	Gorilla_gorilla
ENSPNAG00000019223	polr1a	89	72.913	ENSHBUG00000020021	polr1a	96	75.893	Haplochromis_burtoni
ENSPNAG00000019223	polr1a	99	68.854	ENSHGLG00000006334	POLR1A	100	66.205	Heterocephalus_glaber_female
ENSPNAG00000019223	polr1a	99	68.617	ENSHGLG00100006614	POLR1A	100	66.014	Heterocephalus_glaber_male
ENSPNAG00000019223	polr1a	100	70.323	ENSHCOG00000003345	polr1a	100	70.751	Hippocampus_comes
ENSPNAG00000019223	polr1a	100	81.845	ENSIPUG00000013174	polr1a	100	81.845	Ictalurus_punctatus
ENSPNAG00000019223	polr1a	100	66.123	ENSSTOG00000012580	POLR1A	100	66.182	Ictidomys_tridecemlineatus
ENSPNAG00000019223	polr1a	99	69.252	ENSJJAG00000013113	Polr1a	100	67.071	Jaculus_jaculus
ENSPNAG00000019223	polr1a	100	72.398	ENSKMAG00000007399	polr1a	100	71.913	Kryptolebias_marmoratus
ENSPNAG00000019223	polr1a	100	72.577	ENSLBEG00000015401	polr1a	99	75.477	Labrus_bergylta
ENSPNAG00000019223	polr1a	50	76.769	ENSLACG00000003218	polr1a	100	71.600	Latimeria_chalumnae
ENSPNAG00000019223	polr1a	99	74.983	ENSLOCG00000010881	polr1a	100	72.627	Lepisosteus_oculatus
ENSPNAG00000019223	polr1a	99	70.242	ENSLAFG00000014948	POLR1A	100	67.690	Loxodonta_africana
ENSPNAG00000019223	polr1a	99	67.962	ENSMFAG00000046097	POLR1A	100	67.226	Macaca_fascicularis
ENSPNAG00000019223	polr1a	99	67.894	ENSMMUG00000015815	POLR1A	100	67.169	Macaca_mulatta
ENSPNAG00000019223	polr1a	99	67.962	ENSMNEG00000043313	POLR1A	100	67.226	Macaca_nemestrina
ENSPNAG00000019223	polr1a	99	67.279	ENSMLEG00000042428	POLR1A	100	66.821	Mandrillus_leucophaeus
ENSPNAG00000019223	polr1a	100	71.537	ENSMAMG00000016565	polr1a	100	72.349	Mastacembelus_armatus
ENSPNAG00000019223	polr1a	100	72.238	ENSMZEG00005004915	polr1a	100	72.063	Maylandia_zebra
ENSPNAG00000019223	polr1a	99	67.103	ENSMGAG00000013111	POLR1A	99	65.116	Meleagris_gallopavo
ENSPNAG00000019223	polr1a	92	68.121	ENSMAUG00000008497	Polr1a	100	68.228	Mesocricetus_auratus
ENSPNAG00000019223	polr1a	100	66.878	ENSMICG00000000757	POLR1A	100	67.727	Microcebus_murinus
ENSPNAG00000019223	polr1a	100	68.000	ENSMOCG00000000122	Polr1a	100	67.963	Microtus_ochrogaster
ENSPNAG00000019223	polr1a	100	70.574	ENSMMOG00000010216	polr1a	100	71.068	Mola_mola
ENSPNAG00000019223	polr1a	99	64.750	ENSMODG00000009335	POLR1A	100	63.360	Monodelphis_domestica
ENSPNAG00000019223	polr1a	100	72.005	ENSMALG00000013363	polr1a	100	72.355	Monopterus_albus
ENSPNAG00000019223	polr1a	99	68.939	MGP_CAROLIEiJ_G0028494	Polr1a	100	66.860	Mus_caroli
ENSPNAG00000019223	polr1a	99	69.284	ENSMUSG00000049553	Polr1a	100	67.324	Mus_musculus
ENSPNAG00000019223	polr1a	99	69.125	MGP_PahariEiJ_G0022230	Polr1a	100	66.801	Mus_pahari
ENSPNAG00000019223	polr1a	99	67.992	MGP_SPRETEiJ_G0029499	Polr1a	100	64.683	Mus_spretus
ENSPNAG00000019223	polr1a	99	67.916	ENSMPUG00000009135	POLR1A	100	67.110	Mustela_putorius_furo
ENSPNAG00000019223	polr1a	100	66.590	ENSMLUG00000015723	POLR1A	100	66.878	Myotis_lucifugus
ENSPNAG00000019223	polr1a	99	68.457	ENSNGAG00000017907	Polr1a	100	66.879	Nannospalax_galili
ENSPNAG00000019223	polr1a	100	72.073	ENSNBRG00000000519	polr1a	100	72.005	Neolamprologus_brichardi
ENSPNAG00000019223	polr1a	99	65.832	ENSNLEG00000002264	POLR1A	100	65.420	Nomascus_leucogenys
ENSPNAG00000019223	polr1a	75	85.827	ENSMEUG00000011665	-	75	85.827	Notamacropus_eugenii
ENSPNAG00000019223	polr1a	99	62.148	ENSOPRG00000008269	POLR1A	100	62.087	Ochotona_princeps
ENSPNAG00000019223	polr1a	100	66.822	ENSODEG00000003542	POLR1A	100	66.822	Octodon_degus
ENSPNAG00000019223	polr1a	100	71.895	ENSONIG00000015895	polr1a	100	72.780	Oreochromis_niloticus
ENSPNAG00000019223	polr1a	99	69.622	ENSOCUG00000010138	POLR1A	100	67.712	Oryctolagus_cuniculus
ENSPNAG00000019223	polr1a	100	71.028	ENSORLG00000008753	polr1a	99	71.028	Oryzias_latipes
ENSPNAG00000019223	polr1a	100	69.082	ENSORLG00020020726	polr1a	99	69.006	Oryzias_latipes_hni
ENSPNAG00000019223	polr1a	95	73.404	ENSORLG00015016071	polr1a	98	73.404	Oryzias_latipes_hsok
ENSPNAG00000019223	polr1a	100	67.650	ENSOGAG00000004031	POLR1A	100	67.380	Otolemur_garnettii
ENSPNAG00000019223	polr1a	100	66.609	ENSOARG00000020601	POLR1A	100	66.994	Ovis_aries
ENSPNAG00000019223	polr1a	99	67.483	ENSPPAG00000042450	POLR1A	100	67.071	Pan_paniscus
ENSPNAG00000019223	polr1a	99	68.331	ENSPPRG00000006702	POLR1A	100	66.532	Panthera_pardus
ENSPNAG00000019223	polr1a	99	67.847	ENSPTIG00000018783	POLR1A	100	66.128	Panthera_tigris_altaica
ENSPNAG00000019223	polr1a	99	68.626	ENSPTRG00000012147	POLR1A	100	67.071	Pan_troglodytes
ENSPNAG00000019223	polr1a	99	67.619	ENSPANG00000025908	POLR1A	100	67.110	Papio_anubis
ENSPNAG00000019223	polr1a	99	73.297	ENSPKIG00000005468	polr1a	99	72.942	Paramormyrops_kingsleyae
ENSPNAG00000019223	polr1a	67	66.697	ENSPSIG00000009321	-	99	66.758	Pelodiscus_sinensis
ENSPNAG00000019223	polr1a	55	74.919	ENSPMGG00000009718	polr1a	95	74.919	Periophthalmus_magnuspinnatus
ENSPNAG00000019223	polr1a	100	66.955	ENSPEMG00000022224	Polr1a	100	67.032	Peromyscus_maniculatus_bairdii
ENSPNAG00000019223	polr1a	94	67.862	ENSPCIG00000004222	POLR1A	99	66.646	Phascolarctos_cinereus
ENSPNAG00000019223	polr1a	100	71.062	ENSPFOG00000005025	polr1a	100	71.120	Poecilia_formosa
ENSPNAG00000019223	polr1a	100	70.994	ENSPLAG00000021389	polr1a	100	70.994	Poecilia_latipinna
ENSPNAG00000019223	polr1a	100	69.231	ENSPMEG00000006463	polr1a	100	69.535	Poecilia_mexicana
ENSPNAG00000019223	polr1a	100	70.804	ENSPREG00000002389	polr1a	99	75.630	Poecilia_reticulata
ENSPNAG00000019223	polr1a	99	67.483	ENSPPYG00000012217	POLR1A	100	66.879	Pongo_abelii
ENSPNAG00000019223	polr1a	89	74.514	ENSPCAG00000011582	POLR1A	87	74.514	Procavia_capensis
ENSPNAG00000019223	polr1a	99	67.847	ENSPCOG00000026987	POLR1A	100	67.708	Propithecus_coquereli
ENSPNAG00000019223	polr1a	95	67.032	ENSPVAG00000012674	POLR1A	95	67.595	Pteropus_vampyrus
ENSPNAG00000019223	polr1a	100	72.180	ENSPNYG00000000026	polr1a	100	72.005	Pundamilia_nyererei
ENSPNAG00000019223	polr1a	99	69.628	ENSRNOG00000009545	Polr1a	100	67.671	Rattus_norvegicus
ENSPNAG00000019223	polr1a	99	68.288	ENSRBIG00000028335	POLR1A	100	66.917	Rhinopithecus_bieti
ENSPNAG00000019223	polr1a	99	68.288	ENSRROG00000031473	POLR1A	100	66.859	Rhinopithecus_roxellana
ENSPNAG00000019223	polr1a	95	42.969	YOR341W	RPA190	99	35.743	Saccharomyces_cerevisiae
ENSPNAG00000019223	polr1a	99	69.131	ENSSBOG00000030262	POLR1A	100	66.686	Saimiri_boliviensis_boliviensis
ENSPNAG00000019223	polr1a	99	63.463	ENSSHAG00000014739	POLR1A	100	62.536	Sarcophilus_harrisii
ENSPNAG00000019223	polr1a	99	75.505	ENSSFOG00015019716	polr1a	100	72.695	Scleropages_formosus
ENSPNAG00000019223	polr1a	100	71.979	ENSSMAG00000014342	polr1a	100	71.804	Scophthalmus_maximus
ENSPNAG00000019223	polr1a	100	72.488	ENSSDUG00000014631	polr1a	100	73.322	Seriola_dumerili
ENSPNAG00000019223	polr1a	100	71.735	ENSSLDG00000024095	polr1a	100	71.630	Seriola_lalandi_dorsalis
ENSPNAG00000019223	polr1a	70	90.244	ENSSARG00000003136	-	71	90.244	Sorex_araneus
ENSPNAG00000019223	polr1a	92	73.846	ENSSPUG00000004215	POLR1A	98	73.846	Sphenodon_punctatus
ENSPNAG00000019223	polr1a	65	76.957	ENSSPAG00000016341	polr1a	95	76.957	Stegastes_partitus
ENSPNAG00000019223	polr1a	83	68.109	ENSSSCG00000008226	POLR1A	99	68.020	Sus_scrofa
ENSPNAG00000019223	polr1a	98	68.573	ENSTGUG00000010704	POLR1A	100	66.647	Taeniopygia_guttata
ENSPNAG00000019223	polr1a	100	69.725	ENSTRUG00000002210	polr1a	99	69.848	Takifugu_rubripes
ENSPNAG00000019223	polr1a	98	72.917	ENSTNIG00000010116	polr1a	100	64.991	Tetraodon_nigroviridis
ENSPNAG00000019223	polr1a	73	82.301	ENSTBEG00000008646	POLR1A	74	82.301	Tupaia_belangeri
ENSPNAG00000019223	polr1a	100	64.617	ENSTTRG00000008597	POLR1A	100	64.286	Tursiops_truncatus
ENSPNAG00000019223	polr1a	73	68.266	ENSUAMG00000012158	-	94	68.776	Ursus_americanus
ENSPNAG00000019223	polr1a	99	67.532	ENSUMAG00000006700	POLR1A	97	69.873	Ursus_maritimus
ENSPNAG00000019223	polr1a	99	68.511	ENSVVUG00000001245	POLR1A	100	66.957	Vulpes_vulpes
ENSPNAG00000019223	polr1a	99	66.003	ENSXETG00000001952	polr1a	100	65.433	Xenopus_tropicalis
ENSPNAG00000019223	polr1a	100	70.485	ENSXMAG00000004032	polr1a	100	70.719	Xiphophorus_maculatus