EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000019532 (Gene tree)
Gene ID: 108426069
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 7415 bases
Position: chrKV575323.1:2394815-2402229
Accession: 108426069
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000031917	Smg4_UPF3	PF03467.15	8.6e-54	1	1
ENSPNAP00000013670	Smg4_UPF3	PF03467.15	9.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000021332	-	2758	XM_017695292	ENSPNAP00000031917	455 (aa)	XP_017550781	UPI0008149123
ENSPNAT00000037021	-	2836	XM_017695291	ENSPNAP00000013670	481 (aa)	XP_017550780	UPI0008149B9F

Gene Model

Click here to download ENSPNAG00000019532's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000019532's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000019532	upf3a	87	50.346	ENSPNAG00000021528	upf3b	58	70.690

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000019532	upf3a	93	55.435	ENSG00000169062	UPF3A	96	55.435	Homo_sapiens
ENSPNAG00000019532	upf3a	100	81.538	ENSAPOG00000013484	upf3a	98	81.678	Acanthochromis_polyacanthus
ENSPNAG00000019532	upf3a	94	49.675	ENSAPOG00000012775	upf3b	93	45.902	Acanthochromis_polyacanthus
ENSPNAG00000019532	upf3a	85	60.149	ENSAMEG00000004259	UPF3A	88	60.050	Ailuropoda_melanoleuca
ENSPNAG00000019532	upf3a	99	78.407	ENSACIG00000020468	upf3a	99	78.407	Amphilophus_citrinellus
ENSPNAG00000019532	upf3a	100	82.057	ENSAOCG00000020784	upf3a	99	81.818	Amphiprion_ocellaris
ENSPNAG00000019532	upf3a	94	48.908	ENSAOCG00000000706	upf3b	93	52.425	Amphiprion_ocellaris
ENSPNAG00000019532	upf3a	92	49.115	ENSAPEG00000005545	upf3b	93	45.349	Amphiprion_percula
ENSPNAG00000019532	upf3a	100	82.057	ENSAPEG00000003519	upf3a	99	81.818	Amphiprion_percula
ENSPNAG00000019532	upf3a	99	83.077	ENSATEG00000005843	upf3a	99	82.251	Anabas_testudineus
ENSPNAG00000019532	upf3a	93	49.780	ENSATEG00000018742	upf3b	94	44.889	Anabas_testudineus
ENSPNAG00000019532	upf3a	87	66.993	ENSACAG00000001540	UPF3A	98	66.748	Anolis_carolinensis
ENSPNAG00000019532	upf3a	89	46.991	ENSANAG00000025598	-	74	64.865	Aotus_nancymaae
ENSPNAG00000019532	upf3a	85	51.332	ENSANAG00000021894	-	79	69.412	Aotus_nancymaae
ENSPNAG00000019532	upf3a	89	53.917	ENSANAG00000021713	UPF3A	89	53.917	Aotus_nancymaae
ENSPNAG00000019532	upf3a	100	79.368	ENSACLG00000026274	upf3a	99	79.167	Astatotilapia_calliptera
ENSPNAG00000019532	upf3a	100	94.387	ENSAMXG00000002608	upf3a	100	94.387	Astyanax_mexicanus
ENSPNAG00000019532	upf3a	91	54.920	ENSCJAG00000019102	UPF3A	96	54.048	Callithrix_jacchus
ENSPNAG00000019532	upf3a	85	51.442	ENSCJAG00000004975	UPF3B	79	68.824	Callithrix_jacchus
ENSPNAG00000019532	upf3a	94	54.664	ENSCAFG00000006504	UPF3A	99	54.176	Canis_familiaris
ENSPNAG00000019532	upf3a	94	54.978	ENSCAFG00020014268	UPF3A	96	54.176	Canis_lupus_dingo
ENSPNAG00000019532	upf3a	85	46.437	ENSCAFG00020004074	UPF3B	65	69.231	Canis_lupus_dingo
ENSPNAG00000019532	upf3a	84	56.061	ENSCHIG00000008682	UPF3A	89	49.482	Capra_hircus
ENSPNAG00000019532	upf3a	75	53.562	ENSTSYG00000001918	UPF3A	99	53.600	Carlito_syrichta
ENSPNAG00000019532	upf3a	85	50.962	ENSTSYG00000014690	UPF3B	78	64.571	Carlito_syrichta
ENSPNAG00000019532	upf3a	72	61.062	ENSCPOG00000006824	UPF3A	79	61.062	Cavia_porcellus
ENSPNAG00000019532	upf3a	82	40.779	ENSCCAG00000029813	-	52	60.127	Cebus_capucinus
ENSPNAG00000019532	upf3a	93	54.902	ENSCCAG00000018406	UPF3A	99	54.430	Cebus_capucinus
ENSPNAG00000019532	upf3a	93	56.209	ENSCATG00000029733	UPF3A	96	56.209	Cercocebus_atys
ENSPNAG00000019532	upf3a	93	56.277	ENSCSAG00000017388	UPF3A	96	56.277	Chlorocebus_sabaeus
ENSPNAG00000019532	upf3a	82	58.400	ENSCGRG00001017387	Upf3a	88	56.267	Cricetulus_griseus_chok1gshd
ENSPNAG00000019532	upf3a	83	57.743	ENSCGRG00000001468	Upf3a	88	56.267	Cricetulus_griseus_crigri
ENSPNAG00000019532	upf3a	82	52.475	ENSCSEG00000002046	upf3b	84	47.073	Cynoglossus_semilaevis
ENSPNAG00000019532	upf3a	98	81.250	ENSCSEG00000005106	upf3a	97	81.250	Cynoglossus_semilaevis
ENSPNAG00000019532	upf3a	83	43.424	ENSCVAG00000005030	upf3b	89	44.743	Cyprinodon_variegatus
ENSPNAG00000019532	upf3a	99	78.947	ENSCVAG00000022333	upf3a	98	79.121	Cyprinodon_variegatus
ENSPNAG00000019532	upf3a	83	50.714	ENSDARG00000000489	upf3b	88	45.215	Danio_rerio
ENSPNAG00000019532	upf3a	100	89.004	ENSDARG00000069297	upf3a	100	89.004	Danio_rerio
ENSPNAG00000019532	upf3a	85	60.775	ENSDNOG00000034391	UPF3A	90	61.905	Dasypus_novemcinctus
ENSPNAG00000019532	upf3a	92	53.687	ENSETEG00000010110	UPF3A	96	50.947	Echinops_telfairi
ENSPNAG00000019532	upf3a	89	46.759	ENSEASG00005012919	UPF3B	72	66.216	Equus_asinus_asinus
ENSPNAG00000019532	upf3a	91	56.944	ENSEASG00005021884	UPF3A	90	56.481	Equus_asinus_asinus
ENSPNAG00000019532	upf3a	91	57.541	ENSECAG00000017141	UPF3A	90	57.541	Equus_caballus
ENSPNAG00000019532	upf3a	89	46.759	ENSECAG00000016947	UPF3B	72	60.000	Equus_caballus
ENSPNAG00000019532	upf3a	100	83.011	ENSELUG00000011050	upf3a	100	83.011	Esox_lucius
ENSPNAG00000019532	upf3a	95	56.388	ENSFCAG00000014602	UPF3A	95	56.114	Felis_catus
ENSPNAG00000019532	upf3a	83	50.483	ENSFHEG00000017895	upf3b	92	43.750	Fundulus_heteroclitus
ENSPNAG00000019532	upf3a	70	78.528	ENSGMOG00000019615	upf3a	100	75.284	Gadus_morhua
ENSPNAG00000019532	upf3a	100	78.603	ENSGAFG00000021170	upf3a	99	78.402	Gambusia_affinis
ENSPNAG00000019532	upf3a	81	48.101	ENSGACG00000017435	upf3b	66	64.171	Gasterosteus_aculeatus
ENSPNAG00000019532	upf3a	70	79.688	ENSGACG00000001972	upf3a	100	76.301	Gasterosteus_aculeatus
ENSPNAG00000019532	upf3a	84	49.114	ENSGGOG00000043074	-	82	49.215	Gorilla_gorilla
ENSPNAG00000019532	upf3a	93	55.876	ENSGGOG00000015428	UPF3A	96	55.652	Gorilla_gorilla
ENSPNAG00000019532	upf3a	89	45.952	ENSGGOG00000041219	-	87	49.215	Gorilla_gorilla
ENSPNAG00000019532	upf3a	100	82.251	ENSHBUG00000011325	upf3a	99	82.251	Haplochromis_burtoni
ENSPNAG00000019532	upf3a	87	43.765	ENSHBUG00000017393	upf3b	96	43.011	Haplochromis_burtoni
ENSPNAG00000019532	upf3a	77	55.464	ENSHGLG00000001544	UPF3A	86	55.738	Heterocephalus_glaber_female
ENSPNAG00000019532	upf3a	77	55.464	ENSHGLG00100013244	UPF3A	86	55.738	Heterocephalus_glaber_male
ENSPNAG00000019532	upf3a	99	72.648	ENSHCOG00000013985	upf3a	97	72.331	Hippocampus_comes
ENSPNAG00000019532	upf3a	89	51.259	ENSHCOG00000017004	upf3b	93	46.018	Hippocampus_comes
ENSPNAG00000019532	upf3a	100	89.834	ENSIPUG00000023450	upf3a	100	89.834	Ictalurus_punctatus
ENSPNAG00000019532	upf3a	100	80.562	ENSKMAG00000004381	upf3a	99	80.562	Kryptolebias_marmoratus
ENSPNAG00000019532	upf3a	100	76.368	ENSLBEG00000021570	upf3a	100	75.711	Labrus_bergylta
ENSPNAG00000019532	upf3a	66	46.467	ENSLACG00000006645	UPF3A	74	89.286	Latimeria_chalumnae
ENSPNAG00000019532	upf3a	99	77.371	ENSLOCG00000002665	upf3a	100	77.371	Lepisosteus_oculatus
ENSPNAG00000019532	upf3a	83	50.985	ENSLAFG00000023358	UPF3A	95	49.754	Loxodonta_africana
ENSPNAG00000019532	upf3a	93	55.022	ENSMFAG00000045016	UPF3A	96	54.148	Macaca_fascicularis
ENSPNAG00000019532	upf3a	91	56.689	ENSMMUG00000007449	UPF3A	96	56.319	Macaca_mulatta
ENSPNAG00000019532	upf3a	83	60.256	ENSMNEG00000036402	UPF3A	79	60.614	Macaca_nemestrina
ENSPNAG00000019532	upf3a	83	60.102	ENSMLEG00000014726	UPF3A	89	58.824	Mandrillus_leucophaeus
ENSPNAG00000019532	upf3a	100	77.406	ENSMAMG00000018364	upf3a	99	77.406	Mastacembelus_armatus
ENSPNAG00000019532	upf3a	100	79.368	ENSMZEG00005021571	upf3a	99	79.167	Maylandia_zebra
ENSPNAG00000019532	upf3a	85	67.494	ENSMGAG00000014837	UPF3A	99	67.079	Meleagris_gallopavo
ENSPNAG00000019532	upf3a	58	68.978	ENSMOCG00000000550	Upf3a	56	68.342	Microtus_ochrogaster
ENSPNAG00000019532	upf3a	99	77.707	ENSMMOG00000019751	upf3a	98	77.707	Mola_mola
ENSPNAG00000019532	upf3a	87	44.917	ENSMMOG00000004183	upf3b	92	46.868	Mola_mola
ENSPNAG00000019532	upf3a	90	67.529	ENSMODG00000003159	UPF3A	99	68.000	Monodelphis_domestica
ENSPNAG00000019532	upf3a	50	56.596	ENSMALG00000008042	upf3b	94	44.045	Monopterus_albus
ENSPNAG00000019532	upf3a	82	58.133	MGP_CAROLIEiJ_G0030848	Upf3a	88	58.289	Mus_caroli
ENSPNAG00000019532	upf3a	82	58.667	ENSMUSG00000038398	Upf3a	88	58.667	Mus_musculus
ENSPNAG00000019532	upf3a	82	59.733	MGP_PahariEiJ_G0021311	Upf3a	88	59.733	Mus_pahari
ENSPNAG00000019532	upf3a	82	58.713	MGP_SPRETEiJ_G0031958	Upf3a	88	58.713	Mus_spretus
ENSPNAG00000019532	upf3a	94	54.978	ENSMPUG00000009139	UPF3A	95	54.978	Mustela_putorius_furo
ENSPNAG00000019532	upf3a	83	61.013	ENSMLUG00000015905	UPF3A	93	61.013	Myotis_lucifugus
ENSPNAG00000019532	upf3a	82	58.133	ENSNGAG00000019314	Upf3a	89	57.825	Nannospalax_galili
ENSPNAG00000019532	upf3a	100	82.035	ENSNBRG00000000828	upf3a	99	82.035	Neolamprologus_brichardi
ENSPNAG00000019532	upf3a	93	55.973	ENSNLEG00000007563	UPF3A	96	55.748	Nomascus_leucogenys
ENSPNAG00000019532	upf3a	100	80.860	ENSONIG00000006817	upf3a	99	80.860	Oreochromis_niloticus
ENSPNAG00000019532	upf3a	78	59.673	ENSOANG00000006985	-	96	59.189	Ornithorhynchus_anatinus
ENSPNAG00000019532	upf3a	100	75.751	ENSORLG00000010911	upf3a	99	75.751	Oryzias_latipes
ENSPNAG00000019532	upf3a	83	43.521	ENSORLG00020003758	upf3b	61	58.289	Oryzias_latipes_hni
ENSPNAG00000019532	upf3a	100	75.974	ENSORLG00020014317	upf3a	99	75.974	Oryzias_latipes_hni
ENSPNAG00000019532	upf3a	100	76.407	ENSORLG00015017339	upf3a	58	76.407	Oryzias_latipes_hsok
ENSPNAG00000019532	upf3a	100	77.489	ENSOMEG00000014425	upf3a	99	77.489	Oryzias_melastigma
ENSPNAG00000019532	upf3a	73	62.899	ENSOGAG00000004788	UPF3A	83	62.644	Otolemur_garnettii
ENSPNAG00000019532	upf3a	92	55.125	ENSOARG00000009004	UPF3A	85	57.005	Ovis_aries
ENSPNAG00000019532	upf3a	91	55.909	ENSPPAG00000042267	UPF3A	92	56.591	Pan_paniscus
ENSPNAG00000019532	upf3a	95	56.167	ENSPPRG00000025062	UPF3A	95	55.895	Panthera_pardus
ENSPNAG00000019532	upf3a	83	48.564	ENSPTRG00000041835	-	87	44.909	Pan_troglodytes
ENSPNAG00000019532	upf3a	93	55.000	ENSPTRG00000006073	UPF3A	96	55.652	Pan_troglodytes
ENSPNAG00000019532	upf3a	83	49.347	ENSPTRG00000041187	-	87	45.918	Pan_troglodytes
ENSPNAG00000019532	upf3a	89	43.675	ENSPTRG00000051640	-	94	42.005	Pan_troglodytes
ENSPNAG00000019532	upf3a	92	57.048	ENSPANG00000004346	UPF3A	95	57.048	Papio_anubis
ENSPNAG00000019532	upf3a	91	50.439	ENSPKIG00000019226	upf3b	92	65.772	Paramormyrops_kingsleyae
ENSPNAG00000019532	upf3a	100	76.025	ENSPKIG00000004422	upf3a	100	76.025	Paramormyrops_kingsleyae
ENSPNAG00000019532	upf3a	86	68.473	ENSPSIG00000007468	UPF3A	99	68.227	Pelodiscus_sinensis
ENSPNAG00000019532	upf3a	100	76.763	ENSPMGG00000012696	upf3a	99	76.763	Periophthalmus_magnuspinnatus
ENSPNAG00000019532	upf3a	82	59.626	ENSPEMG00000019968	-	88	59.626	Peromyscus_maniculatus_bairdii
ENSPNAG00000019532	upf3a	90	61.538	ENSPCIG00000019590	-	87	72.330	Phascolarctos_cinereus
ENSPNAG00000019532	upf3a	84	48.635	ENSPCIG00000028914	UPF3B	86	47.826	Phascolarctos_cinereus
ENSPNAG00000019532	upf3a	100	79.650	ENSPFOG00000013222	upf3a	99	79.437	Poecilia_formosa
ENSPNAG00000019532	upf3a	99	78.728	ENSPLAG00000011960	upf3a	99	78.728	Poecilia_latipinna
ENSPNAG00000019532	upf3a	100	76.310	ENSPMEG00000000836	upf3a	99	76.141	Poecilia_mexicana
ENSPNAG00000019532	upf3a	93	55.217	ENSPPYG00000005536	UPF3A	96	55.217	Pongo_abelii
ENSPNAG00000019532	upf3a	85	51.799	ENSPCOG00000021960	UPF3B	53	69.822	Propithecus_coquereli
ENSPNAG00000019532	upf3a	93	52.061	ENSPVAG00000005656	UPF3A	96	52.711	Pteropus_vampyrus
ENSPNAG00000019532	upf3a	100	79.368	ENSPNYG00000011289	upf3a	99	79.167	Pundamilia_nyererei
ENSPNAG00000019532	upf3a	87	44.860	ENSPNYG00000009846	upf3b	96	43.261	Pundamilia_nyererei
ENSPNAG00000019532	upf3a	73	62.275	ENSRNOG00000017397	Upf3a	82	62.275	Rattus_norvegicus
ENSPNAG00000019532	upf3a	85	60.051	ENSRBIG00000034007	UPF3A	95	57.416	Rhinopithecus_bieti
ENSPNAG00000019532	upf3a	83	60.892	ENSRROG00000012212	UPF3A	81	60.892	Rhinopithecus_roxellana
ENSPNAG00000019532	upf3a	81	53.728	ENSSBOG00000029989	UPF3A	83	52.284	Saimiri_boliviensis_boliviensis
ENSPNAG00000019532	upf3a	85	51.202	ENSSBOG00000019740	UPF3B	80	70.238	Saimiri_boliviensis_boliviensis
ENSPNAG00000019532	upf3a	87	68.460	ENSSHAG00000009895	UPF3A	97	68.949	Sarcophilus_harrisii
ENSPNAG00000019532	upf3a	100	71.930	ENSSFOG00015021851	upf3a	100	70.614	Scleropages_formosus
ENSPNAG00000019532	upf3a	100	73.814	ENSSMAG00000003858	upf3a	98	75.155	Scophthalmus_maximus
ENSPNAG00000019532	upf3a	92	49.002	ENSSMAG00000012913	upf3b	91	44.342	Scophthalmus_maximus
ENSPNAG00000019532	upf3a	100	79.281	ENSSDUG00000009680	upf3a	99	79.079	Seriola_dumerili
ENSPNAG00000019532	upf3a	100	82.057	ENSSLDG00000009700	upf3a	99	81.818	Seriola_lalandi_dorsalis
ENSPNAG00000019532	upf3a	80	49.223	ENSSARG00000007262	UPF3A	92	47.781	Sorex_araneus
ENSPNAG00000019532	upf3a	100	81.182	ENSSPAG00000007938	upf3a	99	80.952	Stegastes_partitus
ENSPNAG00000019532	upf3a	51	68.852	ENSSPAG00000009989	upf3b	93	45.012	Stegastes_partitus
ENSPNAG00000019532	upf3a	83	58.974	ENSSSCG00000024679	UPF3A	79	58.333	Sus_scrofa
ENSPNAG00000019532	upf3a	84	70.127	ENSTGUG00000009493	UPF3A	99	69.873	Taeniopygia_guttata
ENSPNAG00000019532	upf3a	99	78.242	ENSTRUG00000012730	upf3a	99	78.242	Takifugu_rubripes
ENSPNAG00000019532	upf3a	85	73.858	ENSTNIG00000014973	upf3a	100	73.350	Tetraodon_nigroviridis
ENSPNAG00000019532	upf3a	78	54.667	ENSTTRG00000015414	UPF3A	78	55.108	Tursiops_truncatus
ENSPNAG00000019532	upf3a	85	46.914	ENSUAMG00000024565	UPF3B	68	64.865	Ursus_americanus
ENSPNAG00000019532	upf3a	83	58.205	ENSVPAG00000003525	UPF3A	95	58.205	Vicugna_pacos
ENSPNAG00000019532	upf3a	85	46.437	ENSVVUG00000011594	UPF3B	83	67.978	Vulpes_vulpes
ENSPNAG00000019532	upf3a	91	55.711	ENSVVUG00000013538	UPF3A	92	53.105	Vulpes_vulpes
ENSPNAG00000019532	upf3a	91	56.440	ENSXETG00000002572	upf3a	100	56.206	Xenopus_tropicalis
ENSPNAG00000019532	upf3a	84	48.889	ENSXETG00000007440	upf3b	77	70.225	Xenopus_tropicalis
ENSPNAG00000019532	upf3a	100	78.618	ENSXMAG00000013452	upf3a	99	78.618	Xiphophorus_maculatus
ENSPNAG00000019532	upf3a	52	56.198	ENSXMAG00000013680	upf3b	88	44.712	Xiphophorus_maculatus