EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000019997 (Gene tree)
Gene ID: 108429553
Gene Symbol: cirbpb
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 4701 bases
Position: chrKV575360.1:2624212-2628912
Accession: 108429553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000014072	RRM_1	PF00076.22	2.9e-26	1	1
ENSPNAP00000032189	RRM_1	PF00076.22	5.4e-22	1	2
ENSPNAP00000032189	RRM_1	PF00076.22	5.4e-22	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000021870	-	693	XM_017701382	ENSPNAP00000032189	230 (aa)	XP_017556871	-
ENSPNAT00000021854	-	2020	XM_017701381	ENSPNAP00000014072	201 (aa)	XP_017556870	UPI000814674C

Gene Model

Click here to download ENSPNAG00000019997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000019997's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000019997	cirbpb	68	66.423	ENSAPOG00000004458	cirbpa	79	68.243	Acanthochromis_polyacanthus
ENSPNAG00000019997	cirbpb	100	55.665	ENSACIG00000016116	cirbpa	100	56.650	Amphilophus_citrinellus
ENSPNAG00000019997	cirbpb	100	57.767	ENSATEG00000014985	cirbpa	100	56.311	Anabas_testudineus
ENSPNAG00000019997	cirbpb	100	57.635	ENSACLG00000002094	-	99	59.799	Astatotilapia_calliptera
ENSPNAG00000019997	cirbpb	50	60.870	ENSAMXG00000002894	cirbpa	81	68.276	Astyanax_mexicanus
ENSPNAG00000019997	cirbpb	100	83.824	ENSAMXG00000015612	cirbpb	84	82.843	Astyanax_mexicanus
ENSPNAG00000019997	cirbpb	100	54.955	ENSCSEG00000014344	cirbpa	100	59.512	Cynoglossus_semilaevis
ENSPNAG00000019997	cirbpb	100	57.767	ENSCVAG00000004853	cirbpa	100	56.585	Cyprinodon_variegatus
ENSPNAG00000019997	cirbpb	50	60.000	ENSDARG00000103672	cirbpa	100	61.386	Danio_rerio
ENSPNAG00000019997	cirbpb	100	72.300	ENSDARG00000013351	cirbpb	92	74.408	Danio_rerio
ENSPNAG00000019997	cirbpb	50	56.034	ENSELUG00000009891	cirbpa	100	67.157	Esox_lucius
ENSPNAG00000019997	cirbpb	71	58.741	ENSELUG00000004675	-	85	60.000	Esox_lucius
ENSPNAG00000019997	cirbpb	50	63.793	ENSELUG00000019588	cirbpb	100	62.617	Esox_lucius
ENSPNAG00000019997	cirbpb	99	56.000	ENSFHEG00000002580	cirbpa	100	54.146	Fundulus_heteroclitus
ENSPNAG00000019997	cirbpb	98	58.738	ENSGMOG00000007179	cirbpb	98	55.502	Gadus_morhua
ENSPNAG00000019997	cirbpb	100	58.824	ENSGAFG00000008654	cirbpa	100	57.561	Gambusia_affinis
ENSPNAG00000019997	cirbpb	100	53.171	ENSGACG00000015206	cirbpa	100	56.098	Gasterosteus_aculeatus
ENSPNAG00000019997	cirbpb	100	58.621	ENSHBUG00000022060	cirbpa	100	60.099	Haplochromis_burtoni
ENSPNAG00000019997	cirbpb	50	54.386	ENSHCOG00000001170	cirbpa	69	75.904	Hippocampus_comes
ENSPNAG00000019997	cirbpb	100	77.670	ENSIPUG00000000698	cirbpb	100	76.555	Ictalurus_punctatus
ENSPNAG00000019997	cirbpb	100	56.931	ENSKMAG00000005905	cirbpa	100	53.171	Kryptolebias_marmoratus
ENSPNAG00000019997	cirbpb	100	58.706	ENSLBEG00000000292	cirbpa	100	53.431	Labrus_bergylta
ENSPNAG00000019997	cirbpb	60	64.167	ENSLBEG00000027731	-	67	73.494	Labrus_bergylta
ENSPNAG00000019997	cirbpb	100	56.716	ENSMAMG00000010168	cirbpa	100	57.711	Mastacembelus_armatus
ENSPNAG00000019997	cirbpb	100	58.621	ENSMZEG00005025577	-	100	60.099	Maylandia_zebra
ENSPNAG00000019997	cirbpb	100	56.716	ENSMALG00000020092	cirbpa	100	57.711	Monopterus_albus
ENSPNAG00000019997	cirbpb	100	58.621	ENSNBRG00000019658	cirbpa	100	60.099	Neolamprologus_brichardi
ENSPNAG00000019997	cirbpb	100	56.650	ENSONIG00000010169	cirbpa	100	57.635	Oreochromis_niloticus
ENSPNAG00000019997	cirbpb	100	52.239	ENSORLG00000015433	cirbpa	100	55.721	Oryzias_latipes
ENSPNAG00000019997	cirbpb	100	52.239	ENSORLG00020016909	cirbpa	100	55.721	Oryzias_latipes_hni
ENSPNAG00000019997	cirbpb	100	52.239	ENSORLG00015016636	cirbpa	100	55.721	Oryzias_latipes_hsok
ENSPNAG00000019997	cirbpb	100	58.209	ENSOMEG00000021469	cirbpa	73	56.098	Oryzias_melastigma
ENSPNAG00000019997	cirbpb	57	52.672	ENSPMGG00000017342	cirbpa	95	53.623	Periophthalmus_magnuspinnatus
ENSPNAG00000019997	cirbpb	98	60.914	ENSPFOG00000015653	cirbpa	100	56.522	Poecilia_formosa
ENSPNAG00000019997	cirbpb	98	60.914	ENSPLAG00000011125	cirbpa	100	56.585	Poecilia_latipinna
ENSPNAG00000019997	cirbpb	98	60.914	ENSPMEG00000013878	cirbpa	100	56.796	Poecilia_mexicana
ENSPNAG00000019997	cirbpb	99	56.219	ENSPREG00000018042	cirbpa	98	55.610	Poecilia_reticulata
ENSPNAG00000019997	cirbpb	100	58.621	ENSPNYG00000007198	-	100	60.099	Pundamilia_nyererei
ENSPNAG00000019997	cirbpb	100	66.995	ENSSFOG00015005346	cirbpb	100	70.297	Scleropages_formosus
ENSPNAG00000019997	cirbpb	100	57.073	ENSSMAG00000002412	cirbpa	100	51.442	Scophthalmus_maximus
ENSPNAG00000019997	cirbpb	100	51.244	ENSSPAG00000023037	cirbpa	51	75.904	Stegastes_partitus
ENSPNAG00000019997	cirbpb	100	59.204	ENSTRUG00000010187	cirbpa	100	55.941	Takifugu_rubripes
ENSPNAG00000019997	cirbpb	100	58.706	ENSTNIG00000000450	cirbpa	100	58.537	Tetraodon_nigroviridis
ENSPNAG00000019997	cirbpb	99	56.716	ENSXCOG00000008262	cirbpa	92	72.603	Xiphophorus_couchianus
ENSPNAG00000019997	cirbpb	100	57.426	ENSXMAG00000019336	cirbpa	100	55.610	Xiphophorus_maculatus