EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000020393 (Gene tree)
Gene ID: 108434609
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 46051 bases
Position: chrKV575448.1:279747-325797
Accession: 108434609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000014252	ResIII	PF04851.15	1.1e-07	1	1
ENSPNAP00000032340	ResIII	PF04851.15	6.1e-07	1	1
ENSPNAP00000014320	ResIII	PF04851.15	6.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000022271	-	6279	XM_017709861	ENSPNAP00000014320	2092 (aa)	XP_017565350	UPI000814674A
ENSPNAT00000022103	-	5037	-	ENSPNAP00000014252	1678 (aa)	-	-
ENSPNAT00000022147	-	6231	XM_017709862	ENSPNAP00000032340	2076 (aa)	XP_017565351	-

Gene Model

Click here to download ENSPNAG00000020393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000020393's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000020393	chd3	94	80.465	ENSPNAG00000011129	-	98	67.564
ENSPNAG00000020393	chd3	96	73.142	ENSPNAG00000009629	chd4a	88	80.184

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000020393	chd3	98	81.611	ENSG00000170004	CHD3	94	78.585	Homo_sapiens
ENSPNAG00000020393	chd3	92	85.688	ENSAPOG00000005614	chd3	95	91.837	Acanthochromis_polyacanthus
ENSPNAG00000020393	chd3	71	86.047	ENSAMEG00000003025	-	94	86.047	Ailuropoda_melanoleuca
ENSPNAG00000020393	chd3	92	88.966	ENSACIG00000019671	chd3	99	93.514	Amphilophus_citrinellus
ENSPNAG00000020393	chd3	98	92.580	ENSAOCG00000023784	chd3	97	91.837	Amphiprion_ocellaris
ENSPNAG00000020393	chd3	98	92.933	ENSAPEG00000006341	chd3	100	84.945	Amphiprion_percula
ENSPNAG00000020393	chd3	98	89.168	ENSATEG00000000848	chd3	95	92.632	Anabas_testudineus
ENSPNAG00000020393	chd3	98	80.836	ENSACAG00000004276	CHD3	94	75.596	Anolis_carolinensis
ENSPNAG00000020393	chd3	99	80.756	ENSANAG00000034323	CHD3	95	77.622	Aotus_nancymaae
ENSPNAG00000020393	chd3	98	85.155	ENSACLG00000009222	chd3	99	85.545	Astatotilapia_calliptera
ENSPNAG00000020393	chd3	99	80.447	ENSBTAG00000014377	CHD3	97	78.236	Bos_taurus
ENSPNAG00000020393	chd3	98	81.540	ENSCJAG00000014766	CHD3	94	78.585	Callithrix_jacchus
ENSPNAG00000020393	chd3	98	80.629	ENSCAFG00000016859	CHD3	88	80.280	Canis_familiaris
ENSPNAG00000020393	chd3	98	80.742	ENSCAFG00020007422	CHD3	99	80.584	Canis_lupus_dingo
ENSPNAG00000020393	chd3	98	80.292	ENSCHIG00000016737	CHD3	89	80.014	Capra_hircus
ENSPNAG00000020393	chd3	98	82.246	ENSTSYG00000035658	CHD3	94	78.585	Carlito_syrichta
ENSPNAG00000020393	chd3	98	79.452	ENSCAPG00000014864	CHD3	93	74.692	Cavia_aperea
ENSPNAG00000020393	chd3	98	80.000	ENSCPOG00000022653	CHD3	88	79.972	Cavia_porcellus
ENSPNAG00000020393	chd3	98	81.611	ENSCCAG00000034792	CHD3	91	78.715	Cebus_capucinus
ENSPNAG00000020393	chd3	98	81.611	ENSCATG00000041717	CHD3	94	78.520	Cercocebus_atys
ENSPNAG00000020393	chd3	98	80.420	ENSCLAG00000010523	CHD3	99	77.368	Chinchilla_lanigera
ENSPNAG00000020393	chd3	98	81.844	ENSCSAG00000011122	CHD3	89	80.098	Chlorocebus_sabaeus
ENSPNAG00000020393	chd3	90	92.466	ENSCPBG00000011966	CHD3	96	83.673	Chrysemys_picta_bellii
ENSPNAG00000020393	chd3	98	81.611	ENSCANG00000037641	CHD3	94	78.520	Colobus_angolensis_palliatus
ENSPNAG00000020393	chd3	98	80.224	ENSCGRG00001011306	Chd3	97	77.363	Cricetulus_griseus_chok1gshd
ENSPNAG00000020393	chd3	93	77.414	ENSCGRG00000007878	Chd3	95	76.674	Cricetulus_griseus_crigri
ENSPNAG00000020393	chd3	98	85.503	ENSCSEG00000004489	chd3	100	86.503	Cynoglossus_semilaevis
ENSPNAG00000020393	chd3	96	91.803	ENSCVAG00000007293	chd3	95	92.623	Cyprinodon_variegatus
ENSPNAG00000020393	chd3	99	92.727	ENSDARG00000021405	chd3	98	91.393	Danio_rerio
ENSPNAG00000020393	chd3	90	87.216	ENSDNOG00000047846	CHD3	73	87.216	Dasypus_novemcinctus
ENSPNAG00000020393	chd3	98	84.553	ENSDORG00000010713	Chd3	95	79.054	Dipodomys_ordii
ENSPNAG00000020393	chd3	98	74.965	ENSETEG00000017733	CHD3	95	75.806	Echinops_telfairi
ENSPNAG00000020393	chd3	80	76.433	ENSEBUG00000008310	chd3	92	76.340	Eptatretus_burgeri
ENSPNAG00000020393	chd3	98	80.532	ENSEASG00005019360	CHD3	95	80.392	Equus_asinus_asinus
ENSPNAG00000020393	chd3	98	80.532	ENSECAG00000010051	CHD3	95	80.392	Equus_caballus
ENSPNAG00000020393	chd3	87	90.722	ENSEEUG00000015205	CHD3	86	90.722	Erinaceus_europaeus
ENSPNAG00000020393	chd3	92	85.232	ENSELUG00000019499	chd3	99	97.279	Esox_lucius
ENSPNAG00000020393	chd3	98	79.972	ENSFCAG00000009629	CHD3	91	78.456	Felis_catus
ENSPNAG00000020393	chd3	98	79.875	ENSFDAG00000008220	CHD3	88	79.457	Fukomys_damarensis
ENSPNAG00000020393	chd3	94	85.148	ENSGMOG00000013599	chd3	91	85.354	Gadus_morhua
ENSPNAG00000020393	chd3	63	85.108	ENSGAFG00000004055	chd3	99	86.061	Gambusia_affinis
ENSPNAG00000020393	chd3	98	88.028	ENSGACG00000019275	chd3	99	76.021	Gasterosteus_aculeatus
ENSPNAG00000020393	chd3	80	83.645	ENSGAGG00000013164	CHD3	94	82.774	Gopherus_agassizii
ENSPNAG00000020393	chd3	98	81.611	ENSGGOG00000013496	CHD3	97	78.520	Gorilla_gorilla
ENSPNAG00000020393	chd3	98	79.749	ENSHGLG00000012017	CHD3	92	78.066	Heterocephalus_glaber_female
ENSPNAG00000020393	chd3	86	80.357	ENSHGLG00100013902	CHD3	95	82.014	Heterocephalus_glaber_male
ENSPNAG00000020393	chd3	97	87.549	ENSHCOG00000010170	chd3	99	79.853	Hippocampus_comes
ENSPNAG00000020393	chd3	99	87.266	ENSIPUG00000003271	chd3	96	93.291	Ictalurus_punctatus
ENSPNAG00000020393	chd3	98	80.334	ENSSTOG00000025907	CHD3	96	78.520	Ictidomys_tridecemlineatus
ENSPNAG00000020393	chd3	98	80.028	ENSJJAG00000017633	Chd3	95	78.792	Jaculus_jaculus
ENSPNAG00000020393	chd3	94	96.535	ENSKMAG00000019292	chd3	100	83.721	Kryptolebias_marmoratus
ENSPNAG00000020393	chd3	96	81.576	ENSLBEG00000028485	chd3	91	91.463	Labrus_bergylta
ENSPNAG00000020393	chd3	98	77.630	ENSLACG00000008031	CHD3	97	74.062	Latimeria_chalumnae
ENSPNAG00000020393	chd3	98	88.693	ENSLOCG00000013965	chd3	100	81.161	Lepisosteus_oculatus
ENSPNAG00000020393	chd3	96	82.449	ENSLAFG00000000572	CHD3	88	83.951	Loxodonta_africana
ENSPNAG00000020393	chd3	98	81.540	ENSMFAG00000020113	CHD3	96	77.507	Macaca_fascicularis
ENSPNAG00000020393	chd3	98	79.359	ENSMMUG00000022221	CHD3	94	77.122	Macaca_mulatta
ENSPNAG00000020393	chd3	98	81.611	ENSMNEG00000001728	CHD3	96	79.818	Macaca_nemestrina
ENSPNAG00000020393	chd3	98	81.611	ENSMLEG00000032249	CHD3	94	78.520	Mandrillus_leucophaeus
ENSPNAG00000020393	chd3	92	89.363	ENSMAMG00000000564	chd3	95	94.737	Mastacembelus_armatus
ENSPNAG00000020393	chd3	98	80.618	ENSMAUG00000013873	Chd3	97	77.593	Mesocricetus_auratus
ENSPNAG00000020393	chd3	98	80.629	ENSMICG00000008741	CHD3	93	75.485	Microcebus_murinus
ENSPNAG00000020393	chd3	98	80.097	ENSMOCG00000004848	Chd3	98	77.363	Microtus_ochrogaster
ENSPNAG00000020393	chd3	98	92.058	ENSMMOG00000012699	chd3	95	92.364	Mola_mola
ENSPNAG00000020393	chd3	98	81.622	ENSMODG00000007509	CHD3	100	80.856	Monodelphis_domestica
ENSPNAG00000020393	chd3	98	80.618	MGP_CAROLIEiJ_G0016564	Chd3	96	78.157	Mus_caroli
ENSPNAG00000020393	chd3	98	81.884	ENSMUSG00000018474	Chd3	97	78.157	Mus_musculus
ENSPNAG00000020393	chd3	98	81.884	MGP_PahariEiJ_G0017695	Chd3	97	78.157	Mus_pahari
ENSPNAG00000020393	chd3	98	81.884	MGP_SPRETEiJ_G0017400	Chd3	97	78.157	Mus_spretus
ENSPNAG00000020393	chd3	92	81.658	ENSMPUG00000008861	CHD3	96	81.581	Mustela_putorius_furo
ENSPNAG00000020393	chd3	98	81.254	ENSMLUG00000014643	-	93	78.131	Myotis_lucifugus
ENSPNAG00000020393	chd3	98	80.604	ENSNGAG00000000773	Chd3	92	78.428	Nannospalax_galili
ENSPNAG00000020393	chd3	94	82.719	ENSNBRG00000000636	chd3	95	85.907	Neolamprologus_brichardi
ENSPNAG00000020393	chd3	96	84.490	ENSNLEG00000009770	CHD3	92	81.496	Nomascus_leucogenys
ENSPNAG00000020393	chd3	88	81.159	ENSMEUG00000005852	CHD3	83	79.318	Notamacropus_eugenii
ENSPNAG00000020393	chd3	98	80.714	ENSOPRG00000011069	CHD3	99	76.888	Ochotona_princeps
ENSPNAG00000020393	chd3	98	82.246	ENSODEG00000017785	CHD3	85	82.246	Octodon_degus
ENSPNAG00000020393	chd3	98	92.933	ENSONIG00000009292	chd3	99	82.954	Oreochromis_niloticus
ENSPNAG00000020393	chd3	98	78.805	ENSOCUG00000029299	CHD3	95	77.184	Oryctolagus_cuniculus
ENSPNAG00000020393	chd3	84	80.933	ENSORLG00000007107	chd3	92	83.912	Oryzias_latipes
ENSPNAG00000020393	chd3	60	86.588	ENSORLG00020008387	chd3	95	84.602	Oryzias_latipes_hni
ENSPNAG00000020393	chd3	93	88.945	ENSOMEG00000013691	chd3	97	87.857	Oryzias_melastigma
ENSPNAG00000020393	chd3	98	82.246	ENSOGAG00000003216	CHD3	86	82.246	Otolemur_garnettii
ENSPNAG00000020393	chd3	98	79.817	ENSOARG00000017855	CHD3	88	79.464	Ovis_aries
ENSPNAG00000020393	chd3	98	79.383	ENSPPAG00000032886	CHD3	96	76.354	Pan_paniscus
ENSPNAG00000020393	chd3	98	80.042	ENSPPRG00000000626	CHD3	94	78.520	Panthera_pardus
ENSPNAG00000020393	chd3	98	81.682	ENSPTRG00000008714	CHD3	94	78.585	Pan_troglodytes
ENSPNAG00000020393	chd3	98	81.540	ENSPANG00000023938	CHD3	96	77.577	Papio_anubis
ENSPNAG00000020393	chd3	99	93.018	ENSPKIG00000006305	chd3	97	91.193	Paramormyrops_kingsleyae
ENSPNAG00000020393	chd3	64	81.793	ENSPSIG00000010177	CHD3	98	82.514	Pelodiscus_sinensis
ENSPNAG00000020393	chd3	98	80.433	ENSPEMG00000014262	Chd3	98	77.276	Peromyscus_maniculatus_bairdii
ENSPNAG00000020393	chd3	96	85.921	ENSPCIG00000005442	CHD3	96	81.601	Phascolarctos_cinereus
ENSPNAG00000020393	chd3	98	92.933	ENSPFOG00000012464	chd3	96	83.019	Poecilia_formosa
ENSPNAG00000020393	chd3	96	82.038	ENSPLAG00000002887	chd3	95	92.800	Poecilia_latipinna
ENSPNAG00000020393	chd3	56	96.296	ENSPMEG00000016725	chd3	92	83.750	Poecilia_mexicana
ENSPNAG00000020393	chd3	99	86.979	ENSPREG00000011044	chd3	97	87.540	Poecilia_reticulata
ENSPNAG00000020393	chd3	98	78.388	ENSPPYG00000007940	CHD3	89	77.003	Pongo_abelii
ENSPNAG00000020393	chd3	96	85.820	ENSPCAG00000004350	CHD3	86	85.820	Procavia_capensis
ENSPNAG00000020393	chd3	98	81.682	ENSPCOG00000020952	CHD3	92	78.520	Propithecus_coquereli
ENSPNAG00000020393	chd3	83	78.455	ENSPVAG00000016344	CHD3	76	78.455	Pteropus_vampyrus
ENSPNAG00000020393	chd3	98	81.884	ENSRNOG00000009722	Chd3	97	79.351	Rattus_norvegicus
ENSPNAG00000020393	chd3	98	79.110	ENSRBIG00000033562	CHD3	96	76.628	Rhinopithecus_bieti
ENSPNAG00000020393	chd3	98	81.611	ENSRROG00000029554	CHD3	95	77.999	Rhinopithecus_roxellana
ENSPNAG00000020393	chd3	98	81.611	ENSSBOG00000020719	CHD3	95	79.580	Saimiri_boliviensis_boliviensis
ENSPNAG00000020393	chd3	98	81.487	ENSSHAG00000014412	CHD3	99	78.399	Sarcophilus_harrisii
ENSPNAG00000020393	chd3	96	90.810	ENSSFOG00015023123	chd3	95	93.141	Scleropages_formosus
ENSPNAG00000020393	chd3	97	94.340	ENSSMAG00000006451	chd3	96	94.086	Scophthalmus_maximus
ENSPNAG00000020393	chd3	58	85.772	ENSSDUG00000005792	chd3	96	84.935	Seriola_dumerili
ENSPNAG00000020393	chd3	98	93.286	ENSSPAG00000013694	chd3	98	94.681	Stegastes_partitus
ENSPNAG00000020393	chd3	99	80.926	ENSSSCG00000021363	CHD3	96	80.618	Sus_scrofa
ENSPNAG00000020393	chd3	82	86.931	ENSTRUG00000014990	chd3	89	86.318	Takifugu_rubripes
ENSPNAG00000020393	chd3	98	92.226	ENSTNIG00000012998	chd3	99	81.755	Tetraodon_nigroviridis
ENSPNAG00000020393	chd3	71	90.909	ENSTBEG00000011454	-	70	90.909	Tupaia_belangeri
ENSPNAG00000020393	chd3	95	84.731	ENSTTRG00000010295	CHD3	86	83.291	Tursiops_truncatus
ENSPNAG00000020393	chd3	98	79.274	ENSUAMG00000005475	CHD3	96	78.925	Ursus_americanus
ENSPNAG00000020393	chd3	60	89.474	ENSVPAG00000010794	-	57	90.196	Vicugna_pacos
ENSPNAG00000020393	chd3	98	80.629	ENSVVUG00000028011	CHD3	93	80.280	Vulpes_vulpes
ENSPNAG00000020393	chd3	99	79.021	ENSXETG00000012991	chd3	95	67.958	Xenopus_tropicalis
ENSPNAG00000020393	chd3	58	88.176	ENSXCOG00000000809	chd3	94	88.401	Xiphophorus_couchianus
ENSPNAG00000020393	chd3	92	88.789	ENSXMAG00000016035	chd3	99	95.109	Xiphophorus_maculatus