EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000021248 (Gene tree)
Gene ID: 108414618
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: embryonic polyadenylate-binding protein-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 7951 bases
Position: chrKV576879.1:14653-22603
Accession: 108414618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000032942	PABP	PF00658.18	1.7e-28	1	1
ENSPNAP00000015225	PABP	PF00658.18	1.8e-28	1	1
ENSPNAP00000032942	RRM_5	PF13893.6	1.4e-06	1	1
ENSPNAP00000015225	RRM_5	PF13893.6	3.3e-06	1	1
ENSPNAP00000015225	RRM_1	PF00076.22	1e-76	1	4
ENSPNAP00000015225	RRM_1	PF00076.22	1e-76	2	4
ENSPNAP00000015225	RRM_1	PF00076.22	1e-76	3	4
ENSPNAP00000015225	RRM_1	PF00076.22	1e-76	4	4
ENSPNAP00000032942	RRM_1	PF00076.22	1.1e-76	1	4
ENSPNAP00000032942	RRM_1	PF00076.22	1.1e-76	2	4
ENSPNAP00000032942	RRM_1	PF00076.22	1.1e-76	3	4
ENSPNAP00000032942	RRM_1	PF00076.22	1.1e-76	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000023403	-	2086	-	ENSPNAP00000015225	613 (aa)	-	-
ENSPNAT00000023332	-	2005	XM_017687504	ENSPNAP00000032942	586 (aa)	XP_017542993	-

Gene Model

Click here to download ENSPNAG00000021248's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000021248's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000021248	pabpc1l	99	66.299	ENSPNAG00000024626	pabpc1b	98	66.299
ENSPNAG00000021248	pabpc1l	56	32.973	ENSPNAG00000016449	tia1l	80	32.973
ENSPNAG00000021248	pabpc1l	56	33.735	ENSPNAG00000029068	ELAVL2	85	33.735
ENSPNAG00000021248	pabpc1l	99	64.557	ENSPNAG00000024355	pabpc4	97	64.873
ENSPNAG00000021248	pabpc1l	99	66.456	ENSPNAG00000028408	pabpc1a	98	66.456
ENSPNAG00000021248	pabpc1l	54	33.735	ENSPNAG00000003633	elavl3	92	33.735
ENSPNAG00000021248	pabpc1l	54	31.944	ENSPNAG00000017169	elavl4	82	31.944
ENSPNAG00000021248	pabpc1l	56	30.288	ENSPNAG00000003272	tial1	78	30.288

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000021248	pabpc1l	99	63.301	ENSG00000101104	PABPC1L	98	78.704	Homo_sapiens
ENSPNAG00000021248	pabpc1l	99	69.243	ENSAPOG00000010842	pabpc1l	99	68.971	Acanthochromis_polyacanthus
ENSPNAG00000021248	pabpc1l	99	60.433	ENSAMEG00000004099	PABPC1L	100	60.433	Ailuropoda_melanoleuca
ENSPNAG00000021248	pabpc1l	100	73.163	ENSACIG00000021004	-	100	73.861	Amphilophus_citrinellus
ENSPNAG00000021248	pabpc1l	100	70.335	ENSAOCG00000006167	-	100	70.335	Amphiprion_ocellaris
ENSPNAG00000021248	pabpc1l	100	69.600	ENSAPEG00000010558	-	98	88.732	Amphiprion_percula
ENSPNAG00000021248	pabpc1l	100	73.175	ENSATEG00000007428	pabpc1l	100	73.333	Anabas_testudineus
ENSPNAG00000021248	pabpc1l	98	67.200	ENSAPLG00000008415	PABPC1L	99	67.195	Anas_platyrhynchos
ENSPNAG00000021248	pabpc1l	99	70.253	ENSACAG00000011841	PABPC1L	99	70.253	Anolis_carolinensis
ENSPNAG00000021248	pabpc1l	99	63.200	ENSANAG00000026826	PABPC1L	99	63.200	Aotus_nancymaae
ENSPNAG00000021248	pabpc1l	100	72.814	ENSACLG00000024791	pabpc1l	100	72.814	Astatotilapia_calliptera
ENSPNAG00000021248	pabpc1l	100	87.520	ENSAMXG00000013552	pabpc1l	100	87.520	Astyanax_mexicanus
ENSPNAG00000021248	pabpc1l	58	87.500	ENSBTAG00000055300	-	100	87.500	Bos_taurus
ENSPNAG00000021248	pabpc1l	60	55.691	ENSBTAG00000016849	PABPC1L	75	55.691	Bos_taurus
ENSPNAG00000021248	pabpc1l	99	63.680	ENSCJAG00000017628	PABPC1L	99	63.680	Callithrix_jacchus
ENSPNAG00000021248	pabpc1l	99	59.908	ENSCAFG00000009573	PABPC1L	100	59.908	Canis_familiaris
ENSPNAG00000021248	pabpc1l	99	64.217	ENSCAFG00020013828	PABPC1L	99	64.217	Canis_lupus_dingo
ENSPNAG00000021248	pabpc1l	98	62.969	ENSCHIG00000025759	PABPC1L	91	62.969	Capra_hircus
ENSPNAG00000021248	pabpc1l	99	63.360	ENSTSYG00000006645	PABPC1L	99	63.360	Carlito_syrichta
ENSPNAG00000021248	pabpc1l	98	58.333	ENSCAPG00000014519	PABPC1L	99	58.333	Cavia_aperea
ENSPNAG00000021248	pabpc1l	99	60.828	ENSCPOG00000013633	PABPC1L	99	60.828	Cavia_porcellus
ENSPNAG00000021248	pabpc1l	99	63.840	ENSCCAG00000023338	PABPC1L	99	63.680	Cebus_capucinus
ENSPNAG00000021248	pabpc1l	99	63.782	ENSCATG00000034065	PABPC1L	99	64.640	Cercocebus_atys
ENSPNAG00000021248	pabpc1l	99	60.766	ENSCLAG00000005298	PABPC1L	99	60.925	Chinchilla_lanigera
ENSPNAG00000021248	pabpc1l	99	63.301	ENSCSAG00000014242	PABPC1L	99	64.160	Chlorocebus_sabaeus
ENSPNAG00000021248	pabpc1l	68	74.208	ENSCPBG00000017755	-	99	74.208	Chrysemys_picta_bellii
ENSPNAG00000021248	pabpc1l	50	83.594	ENSCPBG00000007810	-	81	83.594	Chrysemys_picta_bellii
ENSPNAG00000021248	pabpc1l	96	45.635	ENSCING00000002796	-	97	46.507	Ciona_intestinalis
ENSPNAG00000021248	pabpc1l	100	55.732	ENSCSAVG00000004246	-	89	72.857	Ciona_savignyi
ENSPNAG00000021248	pabpc1l	100	53.416	ENSCSAVG00000003102	-	100	82.550	Ciona_savignyi
ENSPNAG00000021248	pabpc1l	99	60.190	ENSCANG00000037530	PABPC1L	99	60.568	Colobus_angolensis_palliatus
ENSPNAG00000021248	pabpc1l	99	55.911	ENSCGRG00001021938	Pabpc1l	99	55.911	Cricetulus_griseus_chok1gshd
ENSPNAG00000021248	pabpc1l	99	55.911	ENSCGRG00000007946	Pabpc1l	99	55.911	Cricetulus_griseus_crigri
ENSPNAG00000021248	pabpc1l	86	79.208	ENSCSEG00000021295	pabpc1l	95	79.208	Cynoglossus_semilaevis
ENSPNAG00000021248	pabpc1l	100	71.860	ENSCVAG00000015943	-	99	95.420	Cyprinodon_variegatus
ENSPNAG00000021248	pabpc1l	99	79.775	ENSDARG00000002597	pabpc1l	88	95.385	Danio_rerio
ENSPNAG00000021248	pabpc1l	99	65.335	ENSDNOG00000048450	PABPC1L	99	65.335	Dasypus_novemcinctus
ENSPNAG00000021248	pabpc1l	99	61.254	ENSDORG00000001067	Pabpc1l	99	61.254	Dipodomys_ordii
ENSPNAG00000021248	pabpc1l	89	78.049	ENSETEG00000009969	PABPC1L	69	78.049	Echinops_telfairi
ENSPNAG00000021248	pabpc1l	54	51.075	ENSEASG00005023407	-	75	51.075	Equus_asinus_asinus
ENSPNAG00000021248	pabpc1l	58	86.310	ENSEASG00005023408	-	100	86.310	Equus_asinus_asinus
ENSPNAG00000021248	pabpc1l	65	53.913	ENSECAG00000040139	-	83	53.913	Equus_caballus
ENSPNAG00000021248	pabpc1l	99	61.058	ENSEEUG00000005978	PABPC1L	99	61.058	Erinaceus_europaeus
ENSPNAG00000021248	pabpc1l	100	76.228	ENSELUG00000001811	pabpc1l	96	85.294	Esox_lucius
ENSPNAG00000021248	pabpc1l	99	64.800	ENSFCAG00000011692	PABPC1L	99	64.800	Felis_catus
ENSPNAG00000021248	pabpc1l	84	68.831	ENSFALG00000005372	PABPC1L	93	67.204	Ficedula_albicollis
ENSPNAG00000021248	pabpc1l	99	61.120	ENSFDAG00000008291	PABPC1L	99	61.022	Fukomys_damarensis
ENSPNAG00000021248	pabpc1l	100	73.885	ENSFHEG00000003398	pabpc1l	100	73.885	Fundulus_heteroclitus
ENSPNAG00000021248	pabpc1l	99	72.364	ENSGMOG00000004437	pabpc1l	99	72.364	Gadus_morhua
ENSPNAG00000021248	pabpc1l	88	69.841	ENSGALG00000004123	PABPC1L	98	75.787	Gallus_gallus
ENSPNAG00000021248	pabpc1l	100	71.407	ENSGAFG00000021057	pabpc1l	100	71.407	Gambusia_affinis
ENSPNAG00000021248	pabpc1l	99	71.383	ENSGACG00000002792	pabpc1l	100	71.383	Gasterosteus_aculeatus
ENSPNAG00000021248	pabpc1l	99	70.382	ENSGAGG00000000589	PABPC1L	98	76.238	Gopherus_agassizii
ENSPNAG00000021248	pabpc1l	99	63.782	ENSGGOG00000004584	PABPC1L	99	64.000	Gorilla_gorilla
ENSPNAG00000021248	pabpc1l	100	72.655	ENSHBUG00000006134	pabpc1l	100	72.655	Haplochromis_burtoni
ENSPNAG00000021248	pabpc1l	99	61.085	ENSHGLG00000008434	PABPC1L	99	61.404	Heterocephalus_glaber_female
ENSPNAG00000021248	pabpc1l	99	61.085	ENSHGLG00100012151	PABPC1L	99	61.404	Heterocephalus_glaber_male
ENSPNAG00000021248	pabpc1l	56	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSPNAG00000021248	pabpc1l	99	70.627	ENSHCOG00000009270	pabpc1l	100	70.627	Hippocampus_comes
ENSPNAG00000021248	pabpc1l	54	63.218	ENSIPUG00000006760	-	88	63.218	Ictalurus_punctatus
ENSPNAG00000021248	pabpc1l	54	63.793	ENSIPUG00000006780	-	85	63.793	Ictalurus_punctatus
ENSPNAG00000021248	pabpc1l	100	84.160	ENSIPUG00000012602	pabpc1l	100	84.160	Ictalurus_punctatus
ENSPNAG00000021248	pabpc1l	99	63.360	ENSSTOG00000003739	PABPC1L	99	63.360	Ictidomys_tridecemlineatus
ENSPNAG00000021248	pabpc1l	99	48.195	ENSJJAG00000022406	Pabpc1l	99	47.284	Jaculus_jaculus
ENSPNAG00000021248	pabpc1l	99	71.635	ENSKMAG00000016847	pabpc1l	100	71.635	Kryptolebias_marmoratus
ENSPNAG00000021248	pabpc1l	100	72.698	ENSLBEG00000010084	pabpc1l	100	72.698	Labrus_bergylta
ENSPNAG00000021248	pabpc1l	99	67.919	ENSLACG00000005762	PABPC1L	98	69.888	Latimeria_chalumnae
ENSPNAG00000021248	pabpc1l	99	77.338	ENSLOCG00000007519	pabpc1l	99	77.338	Lepisosteus_oculatus
ENSPNAG00000021248	pabpc1l	99	63.752	ENSLAFG00000003553	PABPC1L	100	63.752	Loxodonta_africana
ENSPNAG00000021248	pabpc1l	99	63.622	ENSMFAG00000040365	PABPC1L	99	64.480	Macaca_fascicularis
ENSPNAG00000021248	pabpc1l	99	62.500	ENSMNEG00000032298	PABPC1L	99	63.360	Macaca_nemestrina
ENSPNAG00000021248	pabpc1l	99	63.782	ENSMLEG00000043139	PABPC1L	99	64.640	Mandrillus_leucophaeus
ENSPNAG00000021248	pabpc1l	97	73.071	ENSMAMG00000011854	pabpc1l	97	73.071	Mastacembelus_armatus
ENSPNAG00000021248	pabpc1l	100	72.814	ENSMZEG00005023713	pabpc1l	100	72.814	Maylandia_zebra
ENSPNAG00000021248	pabpc1l	99	69.427	ENSMGAG00000003674	PABPC1L	99	69.427	Meleagris_gallopavo
ENSPNAG00000021248	pabpc1l	99	54.936	ENSMOCG00000013186	Pabpc1l	99	54.936	Microtus_ochrogaster
ENSPNAG00000021248	pabpc1l	99	71.885	ENSMMOG00000020574	-	90	95.385	Mola_mola
ENSPNAG00000021248	pabpc1l	97	65.691	ENSMODG00000016198	PABPC1L	99	65.691	Monodelphis_domestica
ENSPNAG00000021248	pabpc1l	99	70.517	ENSMALG00000021622	pabpc1l	100	72.039	Monopterus_albus
ENSPNAG00000021248	pabpc1l	99	54.945	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	54.945	Mus_caroli
ENSPNAG00000021248	pabpc1l	99	54.874	ENSMUSG00000054582	Pabpc1l	99	54.874	Mus_musculus
ENSPNAG00000021248	pabpc1l	100	55.748	MGP_PahariEiJ_G0026071	Pabpc1l	100	55.748	Mus_pahari
ENSPNAG00000021248	pabpc1l	99	54.945	MGP_SPRETEiJ_G0025549	Pabpc1l	99	54.945	Mus_spretus
ENSPNAG00000021248	pabpc1l	99	65.016	ENSMPUG00000017646	PABPC1L	99	65.016	Mustela_putorius_furo
ENSPNAG00000021248	pabpc1l	98	61.342	ENSMLUG00000006324	PABPC1L	98	61.342	Myotis_lucifugus
ENSPNAG00000021248	pabpc1l	99	57.484	ENSNGAG00000010458	Pabpc1l	99	57.484	Nannospalax_galili
ENSPNAG00000021248	pabpc1l	100	72.408	ENSNBRG00000016633	pabpc1l	100	72.408	Neolamprologus_brichardi
ENSPNAG00000021248	pabpc1l	89	60.568	ENSMEUG00000007905	-	89	60.568	Notamacropus_eugenii
ENSPNAG00000021248	pabpc1l	99	63.360	ENSOPRG00000011846	PABPC1L	99	63.360	Ochotona_princeps
ENSPNAG00000021248	pabpc1l	99	57.120	ENSODEG00000015482	PABPC1L	99	57.120	Octodon_degus
ENSPNAG00000021248	pabpc1l	61	79.375	ENSODEG00000002920	-	99	79.375	Octodon_degus
ENSPNAG00000021248	pabpc1l	100	73.132	ENSONIG00000017314	pabpc1l	100	73.132	Oreochromis_niloticus
ENSPNAG00000021248	pabpc1l	89	55.652	ENSOANG00000015793	-	100	55.652	Ornithorhynchus_anatinus
ENSPNAG00000021248	pabpc1l	99	60.305	ENSOCUG00000003005	PABPC1L	99	60.671	Oryctolagus_cuniculus
ENSPNAG00000021248	pabpc1l	100	71.019	ENSORLG00000010322	pabpc1l	100	72.816	Oryzias_latipes
ENSPNAG00000021248	pabpc1l	100	70.541	ENSORLG00020021193	pabpc1l	100	72.816	Oryzias_latipes_hni
ENSPNAG00000021248	pabpc1l	100	70.860	ENSORLG00015017018	pabpc1l	100	72.664	Oryzias_latipes_hsok
ENSPNAG00000021248	pabpc1l	100	69.394	ENSOMEG00000010789	pabpc1l	100	69.394	Oryzias_melastigma
ENSPNAG00000021248	pabpc1l	99	64.070	ENSOGAG00000032999	PABPC1L	99	64.070	Otolemur_garnettii
ENSPNAG00000021248	pabpc1l	99	63.183	ENSOARG00000004578	PABPC1L	99	63.183	Ovis_aries
ENSPNAG00000021248	pabpc1l	99	63.301	ENSPPAG00000039677	PABPC1L	99	64.000	Pan_paniscus
ENSPNAG00000021248	pabpc1l	55	69.136	ENSPPRG00000019327	-	98	69.136	Panthera_pardus
ENSPNAG00000021248	pabpc1l	98	64.620	ENSPTIG00000006524	PABPC1L	99	64.620	Panthera_tigris_altaica
ENSPNAG00000021248	pabpc1l	56	78.704	ENSPTRG00000013531	PABPC1L	98	78.704	Pan_troglodytes
ENSPNAG00000021248	pabpc1l	99	63.782	ENSPANG00000018788	PABPC1L	99	64.640	Papio_anubis
ENSPNAG00000021248	pabpc1l	56	82.443	ENSPKIG00000016810	-	93	82.443	Paramormyrops_kingsleyae
ENSPNAG00000021248	pabpc1l	100	76.349	ENSPKIG00000007322	pabpc1l	100	76.349	Paramormyrops_kingsleyae
ENSPNAG00000021248	pabpc1l	64	76.513	ENSPSIG00000013289	PABPC1L	98	76.513	Pelodiscus_sinensis
ENSPNAG00000021248	pabpc1l	56	94.697	ENSPMGG00000023117	pabpc1l	94	94.697	Periophthalmus_magnuspinnatus
ENSPNAG00000021248	pabpc1l	67	54.592	ENSPMGG00000023121	-	91	54.592	Periophthalmus_magnuspinnatus
ENSPNAG00000021248	pabpc1l	99	54.016	ENSPEMG00000020671	Pabpc1l	99	54.976	Peromyscus_maniculatus_bairdii
ENSPNAG00000021248	pabpc1l	100	74.245	ENSPFOG00000013241	pabpc1l	100	74.245	Poecilia_formosa
ENSPNAG00000021248	pabpc1l	100	74.086	ENSPLAG00000017490	-	100	74.086	Poecilia_latipinna
ENSPNAG00000021248	pabpc1l	55	96.923	ENSPLAG00000023686	-	92	96.923	Poecilia_latipinna
ENSPNAG00000021248	pabpc1l	100	73.844	ENSPMEG00000007677	pabpc1l	100	73.844	Poecilia_mexicana
ENSPNAG00000021248	pabpc1l	55	96.923	ENSPMEG00000009185	-	88	96.923	Poecilia_mexicana
ENSPNAG00000021248	pabpc1l	64	78.208	ENSPREG00000015886	pabpc1l	99	78.208	Poecilia_reticulata
ENSPNAG00000021248	pabpc1l	99	63.462	ENSPPYG00000011042	PABPC1L	99	64.000	Pongo_abelii
ENSPNAG00000021248	pabpc1l	58	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSPNAG00000021248	pabpc1l	99	64.263	ENSPCOG00000020630	PABPC1L	99	64.800	Propithecus_coquereli
ENSPNAG00000021248	pabpc1l	99	64.630	ENSPVAG00000012663	PABPC1L	99	64.630	Pteropus_vampyrus
ENSPNAG00000021248	pabpc1l	100	69.378	ENSPNYG00000004101	pabpc1l	100	75.000	Pundamilia_nyererei
ENSPNAG00000021248	pabpc1l	99	55.556	ENSRNOG00000012750	Pabpc1l	99	56.032	Rattus_norvegicus
ENSPNAG00000021248	pabpc1l	99	63.942	ENSRBIG00000035381	PABPC1L	99	64.320	Rhinopithecus_bieti
ENSPNAG00000021248	pabpc1l	99	63.782	ENSRROG00000044498	PABPC1L	99	64.160	Rhinopithecus_roxellana
ENSPNAG00000021248	pabpc1l	99	63.200	ENSSBOG00000009532	-	99	63.200	Saimiri_boliviensis_boliviensis
ENSPNAG00000021248	pabpc1l	98	60.000	ENSSHAG00000011446	PABPC1L	100	60.000	Sarcophilus_harrisii
ENSPNAG00000021248	pabpc1l	100	77.548	ENSSFOG00015017304	pabpc1l	100	77.548	Scleropages_formosus
ENSPNAG00000021248	pabpc1l	100	72.684	ENSSMAG00000010516	pabpc1l	93	96.899	Scophthalmus_maximus
ENSPNAG00000021248	pabpc1l	100	73.408	ENSSDUG00000014743	pabpc1l	100	73.408	Seriola_dumerili
ENSPNAG00000021248	pabpc1l	97	71.689	ENSSLDG00000006981	pabpc1l	99	87.946	Seriola_lalandi_dorsalis
ENSPNAG00000021248	pabpc1l	99	68.780	ENSSPUG00000004233	PABPC1L	99	68.780	Sphenodon_punctatus
ENSPNAG00000021248	pabpc1l	93	78.000	ENSSPAG00000017137	pabpc1l	100	78.000	Stegastes_partitus
ENSPNAG00000021248	pabpc1l	99	63.826	ENSSSCG00000007382	PABPC1L	99	63.826	Sus_scrofa
ENSPNAG00000021248	pabpc1l	99	68.487	ENSTGUG00000005114	PABPC1L	100	68.487	Taeniopygia_guttata
ENSPNAG00000021248	pabpc1l	97	72.951	ENSTRUG00000011085	pabpc1l	97	72.951	Takifugu_rubripes
ENSPNAG00000021248	pabpc1l	99	70.513	ENSTNIG00000017903	pabpc1l	98	70.513	Tetraodon_nigroviridis
ENSPNAG00000021248	pabpc1l	89	79.795	ENSTBEG00000002851	PABPC1L	77	79.795	Tupaia_belangeri
ENSPNAG00000021248	pabpc1l	94	62.162	ENSTTRG00000007618	PABPC1L	100	62.664	Tursiops_truncatus
ENSPNAG00000021248	pabpc1l	99	62.620	ENSUAMG00000017682	PABPC1L	99	62.620	Ursus_americanus
ENSPNAG00000021248	pabpc1l	63	66.197	ENSUMAG00000025436	PABPC1L	91	66.197	Ursus_maritimus
ENSPNAG00000021248	pabpc1l	99	62.761	ENSVVUG00000018939	PABPC1L	99	62.761	Vulpes_vulpes
ENSPNAG00000021248	pabpc1l	99	65.924	ENSXETG00000022831	pabpc1l	99	65.924	Xenopus_tropicalis
ENSPNAG00000021248	pabpc1l	100	73.046	ENSXCOG00000005459	pabpc1l	99	92.199	Xiphophorus_couchianus
ENSPNAG00000021248	pabpc1l	100	73.609	ENSXMAG00000017135	pabpc1l	100	73.609	Xiphophorus_maculatus