EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPNAG00000023060 (Gene tree)
Gene ID
108410943
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Pygocentrus_nattereri
Status
putative
Strand
Minus strand
Length
12026 bases
Position
chrKV575297.1:2279392-2291417
Accession
108410943
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPNAP00000016817CPSF73-100_CPF11718.81.6e-5311
ENSPNAP00000033994CPSF73-100_CPF11718.81.9e-5311
ENSPNAP00000016817Beta-CaspPF10996.88.2e-3411
ENSPNAP00000033994Beta-CaspPF10996.89.7e-3411
ENSPNAP00000033994Lactamase_BPF00753.271.6e-1811
ENSPNAP00000016817Lactamase_BPF00753.274.1e-0811
ENSPNAP00000016817RMMBLPF07521.124.4e-2111
ENSPNAP00000033994RMMBLPF07521.125.5e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPNAT00000025385-1911-ENSPNAP00000016817636 (aa)--
ENSPNAT00000025412-5523XM_017682281ENSPNAP00000033994690 (aa)XP_017537770UPI000814AA9F
Gene Model
Click here to download ENSPNAG00000023060's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000023060's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPNAG00000023060cpsf37037.626ENSPNAG00000022204ints118237.626
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPNAG00000023060cpsf39887.647ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPNAG00000023060cpsf37498.232ENSAPOG00000012241CPSF39198.232Acanthochromis_polyacanthus
ENSPNAG00000023060cpsf39987.936ENSAPOG00000022087cpsf39987.936Acanthochromis_polyacanthus
ENSPNAG00000023060cpsf39887.647ENSAMEG00000008493CPSF39987.647Ailuropoda_melanoleuca
ENSPNAG00000023060cpsf310088.540ENSACIG00000023663CPSF310088.540Amphilophus_citrinellus
ENSPNAG00000023060cpsf39985.669ENSACIG00000009846cpsf39985.669Amphilophus_citrinellus
ENSPNAG00000023060cpsf39987.936ENSAOCG00000022056cpsf39693.167Amphiprion_ocellaris
ENSPNAG00000023060cpsf310090.000ENSAOCG00000010077CPSF310090.000Amphiprion_ocellaris
ENSPNAG00000023060cpsf310090.000ENSAPEG00000021167CPSF310090.000Amphiprion_percula
ENSPNAG00000023060cpsf39988.081ENSAPEG00000019526cpsf39989.362Amphiprion_percula
ENSPNAG00000023060cpsf310085.507ENSATEG00000014525CPSF310085.507Anabas_testudineus
ENSPNAG00000023060cpsf39987.791ENSATEG00000003959cpsf39987.791Anabas_testudineus
ENSPNAG00000023060cpsf39985.215ENSAPLG00000006941CPSF39887.034Anas_platyrhynchos
ENSPNAG00000023060cpsf39983.386ENSACAG00000001759CPSF39984.929Anolis_carolinensis
ENSPNAG00000023060cpsf39882.941ENSANAG00000031254CPSF39983.358Aotus_nancymaae
ENSPNAG00000023060cpsf39986.593ENSACLG00000014484cpsf39988.102Astatotilapia_calliptera
ENSPNAG00000023060cpsf310088.383ENSACLG00000018846CPSF310088.383Astatotilapia_calliptera
ENSPNAG00000023060cpsf310096.087ENSAMXG00000004786cpsf310096.087Astyanax_mexicanus
ENSPNAG00000023060cpsf39887.647ENSBTAG00000019735CPSF39987.647Bos_taurus
ENSPNAG00000023060cpsf39058.110WBGene00013460cpsf-38958.110Caenorhabditis_elegans
ENSPNAG00000023060cpsf39887.500ENSCJAG00000006276CPSF39987.500Callithrix_jacchus
ENSPNAG00000023060cpsf39887.647ENSCAFG00000003375CPSF39587.647Canis_familiaris
ENSPNAG00000023060cpsf38989.935ENSCAFG00020026799CPSF39989.935Canis_lupus_dingo
ENSPNAG00000023060cpsf39887.647ENSCHIG00000013973CPSF39987.647Capra_hircus
ENSPNAG00000023060cpsf39887.647ENSTSYG00000002967CPSF39987.647Carlito_syrichta
ENSPNAG00000023060cpsf39985.374ENSCAPG00000013851CPSF39987.538Cavia_aperea
ENSPNAG00000023060cpsf39887.647ENSCPOG00000011299CPSF39987.647Cavia_porcellus
ENSPNAG00000023060cpsf39887.500ENSCCAG00000036730CPSF39987.500Cebus_capucinus
ENSPNAG00000023060cpsf39885.588ENSCATG00000014770CPSF39992.561Cercocebus_atys
ENSPNAG00000023060cpsf39887.647ENSCLAG00000002727CPSF39987.647Chinchilla_lanigera
ENSPNAG00000023060cpsf39879.706ENSCSAG00000007125CPSF39979.706Chlorocebus_sabaeus
ENSPNAG00000023060cpsf385100.000ENSCHOG00000000180CPSF38563.269Choloepus_hoffmanni
ENSPNAG00000023060cpsf39987.101ENSCPBG00000014074CPSF39987.101Chrysemys_picta_bellii
ENSPNAG00000023060cpsf39867.394ENSCING00000007214-9867.394Ciona_intestinalis
ENSPNAG00000023060cpsf39878.351ENSCANG00000034435CPSF39978.351Colobus_angolensis_palliatus
ENSPNAG00000023060cpsf39887.206ENSCGRG00001013134Cpsf39987.206Cricetulus_griseus_chok1gshd
ENSPNAG00000023060cpsf39887.206ENSCGRG00000018319Cpsf39987.206Cricetulus_griseus_crigri
ENSPNAG00000023060cpsf310088.857ENSCSEG00000002021CPSF310088.872Cynoglossus_semilaevis
ENSPNAG00000023060cpsf310088.841ENSCVAG00000015067CPSF310088.841Cyprinodon_variegatus
ENSPNAG00000023060cpsf35073.817ENSCVAG00000022039-9473.817Cyprinodon_variegatus
ENSPNAG00000023060cpsf310091.739ENSDARG00000027649cpsf310091.739Danio_rerio
ENSPNAG00000023060cpsf39886.490ENSDNOG00000008940CPSF39586.490Dasypus_novemcinctus
ENSPNAG00000023060cpsf39488.735ENSDORG00000014263Cpsf39988.735Dipodomys_ordii
ENSPNAG00000023060cpsf39965.889FBgn0261065Cpsf739965.889Drosophila_melanogaster
ENSPNAG00000023060cpsf39476.214ENSETEG00000003893CPSF39976.080Echinops_telfairi
ENSPNAG00000023060cpsf39975.634ENSEBUG00000009018cpsf39975.915Eptatretus_burgeri
ENSPNAG00000023060cpsf39887.647ENSEASG00005003970CPSF39987.647Equus_asinus_asinus
ENSPNAG00000023060cpsf39887.647ENSECAG00000019911CPSF39692.243Equus_caballus
ENSPNAG00000023060cpsf39872.353ENSEEUG00000015422CPSF39972.353Erinaceus_europaeus
ENSPNAG00000023060cpsf39991.279ENSELUG00000013775cpsf39991.279Esox_lucius
ENSPNAG00000023060cpsf39887.647ENSFCAG00000007852CPSF39987.647Felis_catus
ENSPNAG00000023060cpsf39985.374ENSFALG00000006572CPSF39987.152Ficedula_albicollis
ENSPNAG00000023060cpsf39887.040ENSFDAG00000006317CPSF39987.040Fukomys_damarensis
ENSPNAG00000023060cpsf36469.268ENSFHEG00000012186CPSF310069.268Fundulus_heteroclitus
ENSPNAG00000023060cpsf39986.628ENSFHEG00000014774cpsf39986.628Fundulus_heteroclitus
ENSPNAG00000023060cpsf310087.826ENSGMOG00000003157cpsf310087.826Gadus_morhua
ENSPNAG00000023060cpsf39986.628ENSGALG00000016424CPSF39986.628Gallus_gallus
ENSPNAG00000023060cpsf310089.130ENSGAFG00000008016CPSF310089.130Gambusia_affinis
ENSPNAG00000023060cpsf39985.827ENSGAFG00000019449cpsf39985.827Gambusia_affinis
ENSPNAG00000023060cpsf37382.869ENSGAGG00000025583CPSF39382.869Gopherus_agassizii
ENSPNAG00000023060cpsf39985.374ENSGGOG00000001757CPSF39198.065Gorilla_gorilla
ENSPNAG00000023060cpsf36481.127ENSHBUG00000014332CPSF310081.127Haplochromis_burtoni
ENSPNAG00000023060cpsf39987.936ENSHBUG00000001188cpsf39987.936Haplochromis_burtoni
ENSPNAG00000023060cpsf39887.040ENSHGLG00000000666CPSF39887.040Heterocephalus_glaber_female
ENSPNAG00000023060cpsf39887.040ENSHGLG00100007765CPSF39887.040Heterocephalus_glaber_male
ENSPNAG00000023060cpsf39986.647ENSHCOG00000007251cpsf39986.647Hippocampus_comes
ENSPNAG00000023060cpsf39988.244ENSHCOG00000015957CPSF39988.244Hippocampus_comes
ENSPNAG00000023060cpsf310093.043ENSIPUG00000023488cpsf310093.043Ictalurus_punctatus
ENSPNAG00000023060cpsf39887.500ENSSTOG00000004476CPSF39987.500Ictidomys_tridecemlineatus
ENSPNAG00000023060cpsf39886.765ENSJJAG00000023415Cpsf39986.765Jaculus_jaculus
ENSPNAG00000023060cpsf39987.209ENSKMAG00000002806cpsf39987.209Kryptolebias_marmoratus
ENSPNAG00000023060cpsf310089.710ENSKMAG00000007317CPSF310089.710Kryptolebias_marmoratus
ENSPNAG00000023060cpsf35982.306ENSLBEG00000015018-9982.306Labrus_bergylta
ENSPNAG00000023060cpsf39590.274ENSLBEG00000013492CPSF39990.274Labrus_bergylta
ENSPNAG00000023060cpsf39981.831ENSLBEG00000020569cpsf39681.831Labrus_bergylta
ENSPNAG00000023060cpsf310080.608ENSLACG00000008308CPSF310080.608Latimeria_chalumnae
ENSPNAG00000023060cpsf310089.033ENSLOCG00000016823cpsf310089.033Lepisosteus_oculatus
ENSPNAG00000023060cpsf39886.156ENSLAFG00000009467CPSF39986.156Loxodonta_africana
ENSPNAG00000023060cpsf39887.500ENSMFAG00000001339CPSF39495.208Macaca_fascicularis
ENSPNAG00000023060cpsf39985.215ENSMMUG00000018038CPSF39295.208Macaca_mulatta
ENSPNAG00000023060cpsf39097.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSPNAG00000023060cpsf39887.647ENSMLEG00000026825CPSF39297.854Mandrillus_leucophaeus
ENSPNAG00000023060cpsf39986.773ENSMAMG00000003076cpsf39986.773Mastacembelus_armatus
ENSPNAG00000023060cpsf310088.715ENSMAMG00000008835CPSF310088.715Mastacembelus_armatus
ENSPNAG00000023060cpsf310089.275ENSMZEG00005006258CPSF310089.275Maylandia_zebra
ENSPNAG00000023060cpsf39987.936ENSMZEG00005014358cpsf39987.936Maylandia_zebra
ENSPNAG00000023060cpsf39984.738ENSMGAG00000013995CPSF39986.937Meleagris_gallopavo
ENSPNAG00000023060cpsf35977.600ENSMAUG00000000166Cpsf39977.600Mesocricetus_auratus
ENSPNAG00000023060cpsf39882.991ENSMICG00000002363CPSF39982.991Microcebus_murinus
ENSPNAG00000023060cpsf39883.971ENSMOCG00000020067Cpsf39983.971Microtus_ochrogaster
ENSPNAG00000023060cpsf39981.499ENSMMOG00000018212CPSF39883.385Mola_mola
ENSPNAG00000023060cpsf37979.787ENSMMOG00000011923CPSF38579.787Mola_mola
ENSPNAG00000023060cpsf39885.881ENSMODG00000014703CPSF39985.881Monodelphis_domestica
ENSPNAG00000023060cpsf310087.681ENSMALG00000016416cpsf310087.681Monopterus_albus
ENSPNAG00000023060cpsf39685.505ENSMALG00000011474CPSF310084.399Monopterus_albus
ENSPNAG00000023060cpsf39887.500MGP_CAROLIEiJ_G0017640Cpsf39987.500Mus_caroli
ENSPNAG00000023060cpsf39887.500ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSPNAG00000023060cpsf39887.353MGP_PahariEiJ_G0029397Cpsf39987.353Mus_pahari
ENSPNAG00000023060cpsf39887.500MGP_SPRETEiJ_G0018481Cpsf39987.500Mus_spretus
ENSPNAG00000023060cpsf39887.187ENSMPUG00000013213CPSF39987.187Mustela_putorius_furo
ENSPNAG00000023060cpsf39887.518ENSMLUG00000010636CPSF39987.518Myotis_lucifugus
ENSPNAG00000023060cpsf39887.353ENSNGAG00000019836Cpsf39987.353Nannospalax_galili
ENSPNAG00000023060cpsf39987.645ENSNBRG00000004770cpsf39987.645Neolamprologus_brichardi
ENSPNAG00000023060cpsf310088.383ENSNBRG00000010525CPSF310088.383Neolamprologus_brichardi
ENSPNAG00000023060cpsf39887.500ENSNLEG00000013359CPSF39198.065Nomascus_leucogenys
ENSPNAG00000023060cpsf39855.882ENSMEUG00000013117-9955.882Notamacropus_eugenii
ENSPNAG00000023060cpsf39878.940ENSOPRG00000008902CPSF39978.940Ochotona_princeps
ENSPNAG00000023060cpsf39887.647ENSODEG00000003129CPSF39987.647Octodon_degus
ENSPNAG00000023060cpsf39987.936ENSONIG00000018812cpsf39987.936Oreochromis_niloticus
ENSPNAG00000023060cpsf38885.613ENSOANG00000008577CPSF39985.613Ornithorhynchus_anatinus
ENSPNAG00000023060cpsf39887.500ENSOCUG00000003728CPSF39987.500Oryctolagus_cuniculus
ENSPNAG00000023060cpsf39985.320ENSORLG00000018854cpsf39985.320Oryzias_latipes
ENSPNAG00000023060cpsf39985.465ENSORLG00020013331cpsf39985.465Oryzias_latipes_hni
ENSPNAG00000023060cpsf39985.320ENSORLG00015011017cpsf39985.320Oryzias_latipes_hsok
ENSPNAG00000023060cpsf39986.047ENSOMEG00000010647cpsf39586.047Oryzias_melastigma
ENSPNAG00000023060cpsf39877.500ENSOGAG00000001680CPSF39977.500Otolemur_garnettii
ENSPNAG00000023060cpsf39887.647ENSOARG00000015073CPSF39987.647Ovis_aries
ENSPNAG00000023060cpsf39887.647ENSPPAG00000042457CPSF39198.065Pan_paniscus
ENSPNAG00000023060cpsf39887.353ENSPPRG00000016790CPSF39987.353Panthera_pardus
ENSPNAG00000023060cpsf39887.482ENSPTIG00000003920CPSF39987.482Panthera_tigris_altaica
ENSPNAG00000023060cpsf39887.647ENSPTRG00000011638CPSF39198.065Pan_troglodytes
ENSPNAG00000023060cpsf39887.500ENSPANG00000016798CPSF39495.208Papio_anubis
ENSPNAG00000023060cpsf310091.449ENSPKIG00000023646cpsf310091.449Paramormyrops_kingsleyae
ENSPNAG00000023060cpsf39985.215ENSPSIG00000016144CPSF39986.176Pelodiscus_sinensis
ENSPNAG00000023060cpsf310081.289ENSPMGG00000006141-10081.289Periophthalmus_magnuspinnatus
ENSPNAG00000023060cpsf36480.741ENSPMGG00000015311CPSF310080.741Periophthalmus_magnuspinnatus
ENSPNAG00000023060cpsf39886.912ENSPEMG00000017668Cpsf39986.912Peromyscus_maniculatus_bairdii
ENSPNAG00000023060cpsf37989.908ENSPMAG00000004841cpsf310089.908Petromyzon_marinus
ENSPNAG00000023060cpsf39984.261ENSPCIG00000009823CPSF39886.963Phascolarctos_cinereus
ENSPNAG00000023060cpsf310088.696ENSPFOG00000010418-10088.696Poecilia_formosa
ENSPNAG00000023060cpsf310086.812ENSPFOG00000015922cpsf310086.812Poecilia_formosa
ENSPNAG00000023060cpsf310086.812ENSPLAG00000000882cpsf310086.812Poecilia_latipinna
ENSPNAG00000023060cpsf36482.222ENSPLAG00000021300-10082.222Poecilia_latipinna
ENSPNAG00000023060cpsf310086.957ENSPMEG00000018309cpsf310086.957Poecilia_mexicana
ENSPNAG00000023060cpsf310083.188ENSPREG00000004482CPSF310083.188Poecilia_reticulata
ENSPNAG00000023060cpsf39986.142ENSPREG00000014875cpsf39986.142Poecilia_reticulata
ENSPNAG00000023060cpsf39883.382ENSPPYG00000012666CPSF39983.382Pongo_abelii
ENSPNAG00000023060cpsf38466.414ENSPCAG00000015042CPSF38966.414Procavia_capensis
ENSPNAG00000023060cpsf38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSPNAG00000023060cpsf39887.629ENSPVAG00000005324CPSF39987.629Pteropus_vampyrus
ENSPNAG00000023060cpsf38693.260ENSPNYG00000021047CPSF39293.260Pundamilia_nyererei
ENSPNAG00000023060cpsf39987.936ENSPNYG00000004405cpsf39987.936Pundamilia_nyererei
ENSPNAG00000023060cpsf39887.482ENSRNOG00000052418Cpsf39987.482Rattus_norvegicus
ENSPNAG00000023060cpsf39981.876ENSRBIG00000041615CPSF39983.591Rhinopithecus_bieti
ENSPNAG00000023060cpsf39887.647ENSRROG00000033792CPSF39987.647Rhinopithecus_roxellana
ENSPNAG00000023060cpsf38941.584YLR277CYSH19041.584Saccharomyces_cerevisiae
ENSPNAG00000023060cpsf39981.517ENSSBOG00000027263CPSF39783.881Saimiri_boliviensis_boliviensis
ENSPNAG00000023060cpsf39886.765ENSSHAG00000007024CPSF39986.765Sarcophilus_harrisii
ENSPNAG00000023060cpsf310091.159ENSSFOG00015002108cpsf310091.159Scleropages_formosus
ENSPNAG00000023060cpsf39588.906ENSSMAG00000020534CPSF39788.906Scophthalmus_maximus
ENSPNAG00000023060cpsf39987.936ENSSDUG00000002828cpsf39787.936Seriola_dumerili
ENSPNAG00000023060cpsf310089.275ENSSDUG00000018498CPSF310089.275Seriola_dumerili
ENSPNAG00000023060cpsf310089.275ENSSLDG00000005234CPSF310089.275Seriola_lalandi_dorsalis
ENSPNAG00000023060cpsf39987.936ENSSLDG00000008469cpsf39393.000Seriola_lalandi_dorsalis
ENSPNAG00000023060cpsf38985.009ENSSARG00000005186CPSF39085.009Sorex_araneus
ENSPNAG00000023060cpsf39983.096ENSSPUG00000015525CPSF39785.224Sphenodon_punctatus
ENSPNAG00000023060cpsf310089.565ENSSPAG00000002906CPSF310089.565Stegastes_partitus
ENSPNAG00000023060cpsf39987.791ENSSPAG00000018579cpsf39987.791Stegastes_partitus
ENSPNAG00000023060cpsf39887.647ENSSSCG00000020799CPSF39987.647Sus_scrofa
ENSPNAG00000023060cpsf39887.647ENSTGUG00000013016CPSF39987.647Taeniopygia_guttata
ENSPNAG00000023060cpsf36473.645ENSTRUG00000013905CPSF310073.645Takifugu_rubripes
ENSPNAG00000023060cpsf39986.047ENSTRUG00000007030cpsf39886.047Takifugu_rubripes
ENSPNAG00000023060cpsf38491.713ENSTBEG00000002707CPSF38491.713Tupaia_belangeri
ENSPNAG00000023060cpsf38674.696ENSTTRG00000000861CPSF38774.696Tursiops_truncatus
ENSPNAG00000023060cpsf39587.957ENSUAMG00000007535CPSF39487.957Ursus_americanus
ENSPNAG00000023060cpsf39985.374ENSUMAG00000003676CPSF39690.193Ursus_maritimus
ENSPNAG00000023060cpsf39287.224ENSVPAG00000008041CPSF310087.224Vicugna_pacos
ENSPNAG00000023060cpsf39887.647ENSVVUG00000002194CPSF39987.647Vulpes_vulpes
ENSPNAG00000023060cpsf39985.631ENSXETG00000008263cpsf39985.631Xenopus_tropicalis
ENSPNAG00000023060cpsf35880.376ENSXCOG00000000957-8780.376Xiphophorus_couchianus
ENSPNAG00000023060cpsf310086.812ENSXCOG00000019695cpsf310086.812Xiphophorus_couchianus
ENSPNAG00000023060cpsf310088.986ENSXMAG00000027291CPSF310088.986Xiphophorus_maculatus
ENSPNAG00000023060cpsf310086.667ENSXMAG00000009784cpsf310086.667Xiphophorus_maculatus

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