EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000023106 (Gene tree)
Gene ID: 108438905
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 21415 bases
Position: chrKV575573.1:769263-790677
Accession: 108438905
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000016901	MMR_HSR1	PF01926.23	2.1e-08	1	1
ENSPNAP00000016905	MMR_HSR1	PF01926.23	2.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000025520	-	2481	XM_017717028	ENSPNAP00000016905	470 (aa)	XP_017572517	UPI0008147EE8
ENSPNAT00000025516	-	2517	XM_017717026	ENSPNAP00000016901	482 (aa)	XP_017572515	UPI00081455AA

Gene Model

Click here to download ENSPNAG00000023106's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000023106's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000023106	srl	79	33.512	ENSPNAG00000028984	ehd3	69	33.506
ENSPNAG00000023106	srl	94	75.737	ENSPNAG00000007361	-	91	75.737
ENSPNAG00000023106	srl	50	30.000	ENSPNAG00000022138	si:ch211-11k18.4	52	30.000
ENSPNAG00000023106	srl	87	31.220	ENSPNAG00000007408	EHD1	74	31.220
ENSPNAG00000023106	srl	82	32.648	ENSPNAG00000016978	ehd2a	67	32.648
ENSPNAG00000023106	srl	87	30.383	ENSPNAG00000019307	ehd4	72	31.281
ENSPNAG00000023106	srl	78	32.637	ENSPNAG00000026764	ehd2b	66	33.423
ENSPNAG00000023106	srl	78	33.422	ENSPNAG00000026560	ehd2b	66	34.247
ENSPNAG00000023106	srl	83	31.000	ENSPNAG00000023091	ehd1a	70	31.959

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000023106	srl	94	82.579	ENSG00000185739	SRL	99	82.558	Homo_sapiens
ENSPNAG00000023106	srl	100	91.932	ENSAPOG00000018093	srl	99	93.651	Acanthochromis_polyacanthus
ENSPNAG00000023106	srl	94	76.697	ENSAPOG00000012432	SRL	98	76.697	Acanthochromis_polyacanthus
ENSPNAG00000023106	srl	97	80.525	ENSAMEG00000010862	SRL	52	80.525	Ailuropoda_melanoleuca
ENSPNAG00000023106	srl	96	92.461	ENSACIG00000015799	srl	100	92.461	Amphilophus_citrinellus
ENSPNAG00000023106	srl	95	75.223	ENSACIG00000015419	SRL	99	75.223	Amphilophus_citrinellus
ENSPNAG00000023106	srl	94	76.975	ENSAOCG00000017049	SRL	96	77.201	Amphiprion_ocellaris
ENSPNAG00000023106	srl	92	94.240	ENSAOCG00000007574	srl	100	94.240	Amphiprion_ocellaris
ENSPNAG00000023106	srl	94	73.303	ENSAPEG00000006533	SRL	98	73.230	Amphiprion_percula
ENSPNAG00000023106	srl	100	92.340	ENSAPEG00000006911	srl	100	92.340	Amphiprion_percula
ENSPNAG00000023106	srl	100	91.925	ENSATEG00000024315	srl	100	91.925	Anabas_testudineus
ENSPNAG00000023106	srl	94	76.264	ENSATEG00000009643	SRL	52	76.484	Anabas_testudineus
ENSPNAG00000023106	srl	100	80.533	ENSACAG00000016380	SRL	89	80.533	Anolis_carolinensis
ENSPNAG00000023106	srl	99	70.876	ENSACLG00000024674	SRL	61	70.876	Astatotilapia_calliptera
ENSPNAG00000023106	srl	100	91.494	ENSACLG00000027685	srl	100	91.494	Astatotilapia_calliptera
ENSPNAG00000023106	srl	100	95.436	ENSAMXG00000018789	srl	92	95.436	Astyanax_mexicanus
ENSPNAG00000023106	srl	89	77.088	ENSAMXG00000038693	SRL	100	73.289	Astyanax_mexicanus
ENSPNAG00000023106	srl	94	82.207	ENSBTAG00000001078	SRL	56	82.207	Bos_taurus
ENSPNAG00000023106	srl	94	82.579	ENSCJAG00000019750	SRL	100	78.858	Callithrix_jacchus
ENSPNAG00000023106	srl	95	81.573	ENSCAFG00000019233	SRL	83	81.573	Canis_familiaris
ENSPNAG00000023106	srl	95	81.573	ENSCAFG00020025024	SRL	55	81.573	Canis_lupus_dingo
ENSPNAG00000023106	srl	99	79.443	ENSCHIG00000017927	SRL	55	82.207	Capra_hircus
ENSPNAG00000023106	srl	100	79.493	ENSTSYG00000007919	SRL	99	83.256	Carlito_syrichta
ENSPNAG00000023106	srl	94	81.674	ENSCPOG00000012643	SRL	100	78.390	Cavia_porcellus
ENSPNAG00000023106	srl	94	77.602	ENSCCAG00000032646	SRL	100	83.905	Cebus_capucinus
ENSPNAG00000023106	srl	95	82.022	ENSCATG00000032227	-	100	78.858	Cercocebus_atys
ENSPNAG00000023106	srl	94	81.674	ENSCLAG00000016242	SRL	100	78.390	Chinchilla_lanigera
ENSPNAG00000023106	srl	82	84.935	ENSCHOG00000001618	SRL	52	84.935	Choloepus_hoffmanni
ENSPNAG00000023106	srl	96	85.492	ENSCPBG00000026371	SRL	99	80.124	Chrysemys_picta_bellii
ENSPNAG00000023106	srl	95	58.862	ENSCING00000005231	-	98	59.819	Ciona_intestinalis
ENSPNAG00000023106	srl	94	82.579	ENSCANG00000035872	SRL	99	82.558	Colobus_angolensis_palliatus
ENSPNAG00000023106	srl	97	80.349	ENSCGRG00001016630	Srl	100	79.025	Cricetulus_griseus_chok1gshd
ENSPNAG00000023106	srl	97	80.349	ENSCGRG00000005458	Srl	100	79.025	Cricetulus_griseus_crigri
ENSPNAG00000023106	srl	99	73.176	ENSCSEG00000011866	SRL	94	73.176	Cynoglossus_semilaevis
ENSPNAG00000023106	srl	100	90.456	ENSCSEG00000016151	srl	100	90.456	Cynoglossus_semilaevis
ENSPNAG00000023106	srl	100	89.834	ENSCVAG00000003513	srl	100	89.834	Cyprinodon_variegatus
ENSPNAG00000023106	srl	96	75.541	ENSCVAG00000022465	SRL	61	75.541	Cyprinodon_variegatus
ENSPNAG00000023106	srl	100	93.361	ENSDARG00000104587	srl	100	93.361	Danio_rerio
ENSPNAG00000023106	srl	81	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSPNAG00000023106	srl	95	81.798	ENSDNOG00000011643	SRL	53	81.798	Dasypus_novemcinctus
ENSPNAG00000023106	srl	94	82.353	ENSDORG00000014807	Srl	100	79.237	Dipodomys_ordii
ENSPNAG00000023106	srl	79	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSPNAG00000023106	srl	94	82.658	ENSEASG00005000942	SRL	53	82.658	Equus_asinus_asinus
ENSPNAG00000023106	srl	99	80.085	ENSECAG00000024219	SRL	99	80.085	Equus_caballus
ENSPNAG00000023106	srl	100	85.626	ENSELUG00000015616	srl	100	85.626	Esox_lucius
ENSPNAG00000023106	srl	100	79.070	ENSFCAG00000022075	SRL	100	79.281	Felis_catus
ENSPNAG00000023106	srl	96	81.556	ENSFALG00000004328	SRL	64	81.696	Ficedula_albicollis
ENSPNAG00000023106	srl	94	82.579	ENSFDAG00000006199	SRL	100	79.237	Fukomys_damarensis
ENSPNAG00000023106	srl	100	88.382	ENSFHEG00000011239	srl	100	88.382	Fundulus_heteroclitus
ENSPNAG00000023106	srl	100	72.727	ENSFHEG00000011854	SRL	99	75.446	Fundulus_heteroclitus
ENSPNAG00000023106	srl	94	90.508	ENSGMOG00000014954	srl	99	90.508	Gadus_morhua
ENSPNAG00000023106	srl	98	80.346	ENSGALG00000038884	SRL	98	80.346	Gallus_gallus
ENSPNAG00000023106	srl	100	89.419	ENSGAFG00000000010	srl	100	89.419	Gambusia_affinis
ENSPNAG00000023106	srl	96	76.615	ENSGAFG00000016984	SRL	100	76.615	Gambusia_affinis
ENSPNAG00000023106	srl	94	92.747	ENSGACG00000011332	srl	100	92.747	Gasterosteus_aculeatus
ENSPNAG00000023106	srl	97	80.131	ENSGGOG00000011312	-	100	78.903	Gorilla_gorilla
ENSPNAG00000023106	srl	100	91.494	ENSHBUG00000007581	srl	100	91.494	Haplochromis_burtoni
ENSPNAG00000023106	srl	96	74.082	ENSHBUG00000015710	SRL	61	71.487	Haplochromis_burtoni
ENSPNAG00000023106	srl	94	82.805	ENSHGLG00000015271	SRL	100	79.449	Heterocephalus_glaber_female
ENSPNAG00000023106	srl	94	82.805	ENSHGLG00100019378	SRL	100	79.449	Heterocephalus_glaber_male
ENSPNAG00000023106	srl	100	90.909	ENSHCOG00000008687	srl	99	91.964	Hippocampus_comes
ENSPNAG00000023106	srl	94	75.110	ENSHCOG00000001012	SRL	50	75.110	Hippocampus_comes
ENSPNAG00000023106	srl	100	93.996	ENSIPUG00000012513	srl	100	93.996	Ictalurus_punctatus
ENSPNAG00000023106	srl	93	68.119	ENSIPUG00000011609	SRL	95	68.119	Ictalurus_punctatus
ENSPNAG00000023106	srl	95	81.573	ENSSTOG00000021151	-	100	78.814	Ictidomys_tridecemlineatus
ENSPNAG00000023106	srl	100	78.814	ENSJJAG00000016400	Srl	100	78.814	Jaculus_jaculus
ENSPNAG00000023106	srl	98	88.771	ENSKMAG00000014115	srl	93	91.924	Kryptolebias_marmoratus
ENSPNAG00000023106	srl	94	76.644	ENSKMAG00000019537	SRL	100	76.644	Kryptolebias_marmoratus
ENSPNAG00000023106	srl	100	90.658	ENSLBEG00000026643	srl	100	90.658	Labrus_bergylta
ENSPNAG00000023106	srl	94	76.471	ENSLBEG00000013811	SRL	95	76.697	Labrus_bergylta
ENSPNAG00000023106	srl	100	82.195	ENSLACG00000002825	SRL	100	82.195	Latimeria_chalumnae
ENSPNAG00000023106	srl	99	88.223	ENSLOCG00000002644	srl	99	88.223	Lepisosteus_oculatus
ENSPNAG00000023106	srl	94	81.900	ENSLAFG00000006329	SRL	50	81.900	Loxodonta_africana
ENSPNAG00000023106	srl	91	82.558	ENSMFAG00000037383	SRL	99	82.558	Macaca_fascicularis
ENSPNAG00000023106	srl	97	80.568	ENSMNEG00000019236	-	97	80.568	Macaca_nemestrina
ENSPNAG00000023106	srl	94	76.018	ENSMLEG00000032156	SRL	100	72.727	Mandrillus_leucophaeus
ENSPNAG00000023106	srl	99	90.598	ENSMAMG00000023322	srl	99	90.598	Mastacembelus_armatus
ENSPNAG00000023106	srl	94	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSPNAG00000023106	srl	99	71.079	ENSMZEG00005004010	SRL	62	71.079	Maylandia_zebra
ENSPNAG00000023106	srl	100	91.494	ENSMZEG00005004548	srl	100	91.494	Maylandia_zebra
ENSPNAG00000023106	srl	97	80.220	ENSMGAG00000009342	SRL	95	83.289	Meleagris_gallopavo
ENSPNAG00000023106	srl	96	82.405	ENSMICG00000032307	SRL	100	79.493	Microcebus_murinus
ENSPNAG00000023106	srl	100	78.602	ENSMOCG00000008208	Srl	100	78.602	Microtus_ochrogaster
ENSPNAG00000023106	srl	96	91.778	ENSMMOG00000013970	srl	100	91.778	Mola_mola
ENSPNAG00000023106	srl	94	74.505	ENSMMOG00000021572	SRL	99	74.505	Mola_mola
ENSPNAG00000023106	srl	96	81.556	ENSMODG00000016380	-	51	81.556	Monodelphis_domestica
ENSPNAG00000023106	srl	100	88.936	ENSMALG00000005039	srl	98	91.648	Monopterus_albus
ENSPNAG00000023106	srl	89	76.611	ENSMALG00000000670	SRL	98	76.611	Monopterus_albus
ENSPNAG00000023106	srl	96	81.457	MGP_CAROLIEiJ_G0020400	Srl	100	79.449	Mus_caroli
ENSPNAG00000023106	srl	96	81.457	ENSMUSG00000022519	Srl	100	79.449	Mus_musculus
ENSPNAG00000023106	srl	94	82.353	MGP_PahariEiJ_G0016108	Srl	50	80.131	Mus_pahari
ENSPNAG00000023106	srl	96	81.457	MGP_SPRETEiJ_G0021294	Srl	100	79.449	Mus_spretus
ENSPNAG00000023106	srl	95	81.573	ENSMPUG00000015025	SRL	54	81.573	Mustela_putorius_furo
ENSPNAG00000023106	srl	98	80.652	ENSMLUG00000030733	SRL	58	80.652	Myotis_lucifugus
ENSPNAG00000023106	srl	94	82.805	ENSNGAG00000019741	Srl	100	79.449	Nannospalax_galili
ENSPNAG00000023106	srl	99	70.672	ENSNBRG00000002422	SRL	61	70.672	Neolamprologus_brichardi
ENSPNAG00000023106	srl	100	91.064	ENSNBRG00000023775	srl	100	91.064	Neolamprologus_brichardi
ENSPNAG00000023106	srl	94	77.376	ENSNLEG00000029051	SRL	100	73.784	Nomascus_leucogenys
ENSPNAG00000023106	srl	98	74.783	ENSOPRG00000000477	-	54	74.783	Ochotona_princeps
ENSPNAG00000023106	srl	94	82.127	ENSODEG00000013256	SRL	100	78.602	Octodon_degus
ENSPNAG00000023106	srl	100	91.286	ENSONIG00000005192	srl	100	91.286	Oreochromis_niloticus
ENSPNAG00000023106	srl	96	80.752	ENSOCUG00000025140	SRL	50	80.752	Oryctolagus_cuniculus
ENSPNAG00000023106	srl	94	75.000	ENSORLG00000015064	SRL	97	75.000	Oryzias_latipes
ENSPNAG00000023106	srl	100	90.249	ENSORLG00000008291	srl	97	90.249	Oryzias_latipes
ENSPNAG00000023106	srl	100	90.249	ENSORLG00020019784	srl	85	90.249	Oryzias_latipes_hni
ENSPNAG00000023106	srl	94	75.225	ENSORLG00020018173	SRL	97	75.225	Oryzias_latipes_hni
ENSPNAG00000023106	srl	100	89.834	ENSORLG00015009342	srl	97	89.834	Oryzias_latipes_hsok
ENSPNAG00000023106	srl	94	75.225	ENSORLG00015019063	SRL	97	75.225	Oryzias_latipes_hsok
ENSPNAG00000023106	srl	100	89.834	ENSOMEG00000010006	srl	98	92.273	Oryzias_melastigma
ENSPNAG00000023106	srl	96	72.318	ENSOMEG00000005682	SRL	53	73.102	Oryzias_melastigma
ENSPNAG00000023106	srl	97	79.565	ENSOGAG00000029266	SRL	56	79.565	Otolemur_garnettii
ENSPNAG00000023106	srl	99	80.000	ENSOARG00000003074	SRL	58	80.000	Ovis_aries
ENSPNAG00000023106	srl	95	82.022	ENSPPAG00000024919	-	99	82.558	Pan_paniscus
ENSPNAG00000023106	srl	100	79.070	ENSPPRG00000010274	SRL	99	82.093	Panthera_pardus
ENSPNAG00000023106	srl	100	79.070	ENSPTIG00000015162	SRL	99	82.093	Panthera_tigris_altaica
ENSPNAG00000023106	srl	95	82.022	ENSPTRG00000007712	SRL	99	82.558	Pan_troglodytes
ENSPNAG00000023106	srl	97	80.786	ENSPANG00000013804	SRL	98	80.786	Papio_anubis
ENSPNAG00000023106	srl	100	92.178	ENSPKIG00000006405	srl	100	92.178	Paramormyrops_kingsleyae
ENSPNAG00000023106	srl	100	79.618	ENSPKIG00000024974	SRL	94	79.618	Paramormyrops_kingsleyae
ENSPNAG00000023106	srl	97	80.879	ENSPSIG00000008586	SRL	51	80.879	Pelodiscus_sinensis
ENSPNAG00000023106	srl	94	75.847	ENSPMGG00000023505	-	100	75.847	Periophthalmus_magnuspinnatus
ENSPNAG00000023106	srl	98	90.000	ENSPMGG00000021081	srl	99	90.000	Periophthalmus_magnuspinnatus
ENSPNAG00000023106	srl	94	82.353	ENSPEMG00000015842	Srl	100	79.025	Peromyscus_maniculatus_bairdii
ENSPNAG00000023106	srl	89	67.356	ENSPMAG00000004786	srl	99	67.356	Petromyzon_marinus
ENSPNAG00000023106	srl	96	81.637	ENSPCIG00000012128	SRL	99	81.637	Phascolarctos_cinereus
ENSPNAG00000023106	srl	100	89.212	ENSPFOG00000011408	srl	98	88.703	Poecilia_formosa
ENSPNAG00000023106	srl	96	75.056	ENSPLAG00000002932	SRL	100	75.056	Poecilia_latipinna
ENSPNAG00000023106	srl	98	89.154	ENSPLAG00000008017	srl	100	89.154	Poecilia_latipinna
ENSPNAG00000023106	srl	96	73.650	ENSPMEG00000005890	SRL	61	73.650	Poecilia_mexicana
ENSPNAG00000023106	srl	100	88.936	ENSPMEG00000006745	srl	100	89.154	Poecilia_mexicana
ENSPNAG00000023106	srl	96	76.169	ENSPREG00000000315	SRL	100	76.169	Poecilia_reticulata
ENSPNAG00000023106	srl	100	89.419	ENSPREG00000007751	srl	99	91.111	Poecilia_reticulata
ENSPNAG00000023106	srl	89	83.771	ENSPPYG00000007053	SRL	98	83.771	Pongo_abelii
ENSPNAG00000023106	srl	96	82.040	ENSPCAG00000003378	-	51	82.040	Procavia_capensis
ENSPNAG00000023106	srl	96	81.416	ENSPCOG00000023135	SRL	99	82.558	Propithecus_coquereli
ENSPNAG00000023106	srl	95	82.022	ENSPVAG00000006586	SRL	55	82.022	Pteropus_vampyrus
ENSPNAG00000023106	srl	100	91.701	ENSPNYG00000001200	srl	100	91.701	Pundamilia_nyererei
ENSPNAG00000023106	srl	99	71.079	ENSPNYG00000003423	SRL	61	71.079	Pundamilia_nyererei
ENSPNAG00000023106	srl	97	80.131	ENSRBIG00000042358	SRL	51	80.131	Rhinopithecus_bieti
ENSPNAG00000023106	srl	94	82.579	ENSSBOG00000029273	SRL	100	78.858	Saimiri_boliviensis_boliviensis
ENSPNAG00000023106	srl	96	81.333	ENSSHAG00000011715	-	51	81.333	Sarcophilus_harrisii
ENSPNAG00000023106	srl	100	91.322	ENSSFOG00015009773	srl	100	91.322	Scleropages_formosus
ENSPNAG00000023106	srl	94	78.153	ENSSFOG00015021327	SRL	50	77.951	Scleropages_formosus
ENSPNAG00000023106	srl	100	90.269	ENSSMAG00000016274	srl	100	90.683	Scophthalmus_maximus
ENSPNAG00000023106	srl	94	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSPNAG00000023106	srl	94	77.333	ENSSDUG00000009161	SRL	99	77.333	Seriola_dumerili
ENSPNAG00000023106	srl	94	93.243	ENSSDUG00000010808	srl	98	93.243	Seriola_dumerili
ENSPNAG00000023106	srl	94	77.193	ENSSLDG00000014601	SRL	100	77.193	Seriola_lalandi_dorsalis
ENSPNAG00000023106	srl	97	92.489	ENSSLDG00000022024	srl	100	91.286	Seriola_lalandi_dorsalis
ENSPNAG00000023106	srl	96	81.057	ENSSPUG00000016859	SRL	100	81.057	Sphenodon_punctatus
ENSPNAG00000023106	srl	100	91.529	ENSSPAG00000019105	srl	100	91.529	Stegastes_partitus
ENSPNAG00000023106	srl	94	77.778	ENSSPAG00000014254	SRL	98	77.778	Stegastes_partitus
ENSPNAG00000023106	srl	96	81.758	ENSSSCG00000007949	SRL	98	83.447	Sus_scrofa
ENSPNAG00000023106	srl	77	86.188	ENSTGUG00000016121	-	100	86.188	Taeniopygia_guttata
ENSPNAG00000023106	srl	96	81.498	ENSTGUG00000003951	-	99	81.498	Taeniopygia_guttata
ENSPNAG00000023106	srl	100	90.456	ENSTRUG00000006005	srl	100	90.456	Takifugu_rubripes
ENSPNAG00000023106	srl	89	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSPNAG00000023106	srl	97	91.850	ENSTNIG00000009739	srl	100	90.000	Tetraodon_nigroviridis
ENSPNAG00000023106	srl	96	80.482	ENSUAMG00000005701	SRL	57	80.482	Ursus_americanus
ENSPNAG00000023106	srl	96	80.702	ENSUMAG00000002574	SRL	56	80.702	Ursus_maritimus
ENSPNAG00000023106	srl	99	78.891	ENSXETG00000017313	srl	99	81.514	Xenopus_tropicalis
ENSPNAG00000023106	srl	90	91.686	ENSXCOG00000010424	srl	97	91.686	Xiphophorus_couchianus
ENSPNAG00000023106	srl	96	76.444	ENSXCOG00000014584	SRL	99	76.444	Xiphophorus_couchianus
ENSPNAG00000023106	srl	96	74.298	ENSXMAG00000027598	SRL	63	74.298	Xiphophorus_maculatus
ENSPNAG00000023106	srl	100	89.212	ENSXMAG00000004625	srl	95	89.212	Xiphophorus_maculatus