EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000023439 (Gene tree)
Gene ID: 108429496
Gene Symbol: rc3h1a
Alias: rc3h1|si:dkey-192m14.4
Full Name: roquin-1-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 13430 bases
Position: chrKV575360.1:292064-305493
Accession: 108429496
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000016412	zf-CCCH	PF00642.24	7.8e-05	1	1
ENSPNAP00000033749	zf-CCCH	PF00642.24	0.00023	1	1
ENSPNAP00000016442	zf-CCCH	PF00642.24	0.00023	1	1
ENSPNAP00000033787	zf-CCCH	PF00642.24	0.00023	1	1
ENSPNAP00000016610	zf-CCCH	PF00642.24	0.00025	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000024902	-	3060	-	ENSPNAP00000033749	1019 (aa)	-	-
ENSPNAT00000024974	-	3102	-	ENSPNAP00000033787	1033 (aa)	-	-
ENSPNAT00000024909	-	3069	-	ENSPNAP00000016442	1022 (aa)	-	-
ENSPNAT00000038120	-	1386	-	ENSPNAP00000016412	461 (aa)	-	-
ENSPNAT00000025184	-	3270	XM_017701259	ENSPNAP00000016610	1089 (aa)	XP_017556748	-

Gene Model

Click here to download ENSPNAG00000023439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000023439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000023439	rc3h1a	98	77.143	ENSPNAG00000017502	rc3h2	50	78.146
ENSPNAG00000023439	rc3h1a	96	92.744	ENSPNAG00000017240	rc3h1b	94	92.727

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000023439	rc3h1a	95	90.991	ENSG00000135870	RC3H1	97	62.422	Homo_sapiens
ENSPNAG00000023439	rc3h1a	95	90.991	ENSAMEG00000015657	RC3H1	97	61.532	Ailuropoda_melanoleuca
ENSPNAG00000023439	rc3h1a	95	90.380	ENSAPLG00000005341	RC3H1	97	60.873	Anas_platyrhynchos
ENSPNAG00000023439	rc3h1a	95	90.380	ENSACAG00000015271	RC3H1	97	61.077	Anolis_carolinensis
ENSPNAG00000023439	rc3h1a	95	90.991	ENSANAG00000036716	RC3H1	97	61.538	Aotus_nancymaae
ENSPNAG00000023439	rc3h1a	95	90.991	ENSBTAG00000052708	RC3H1	97	62.032	Bos_taurus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSCJAG00000009106	RC3H1	97	61.715	Callithrix_jacchus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSCAFG00000014434	RC3H1	97	61.741	Canis_familiaris
ENSPNAG00000023439	rc3h1a	96	90.930	ENSCAFG00020017112	RC3H1	99	91.136	Canis_lupus_dingo
ENSPNAG00000023439	rc3h1a	95	90.766	ENSCHIG00000002873	RC3H1	97	61.998	Capra_hircus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSTSYG00000003913	RC3H1	97	61.627	Carlito_syrichta
ENSPNAG00000023439	rc3h1a	95	90.090	ENSCPOG00000004349	RC3H1	97	60.125	Cavia_porcellus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSCCAG00000025652	RC3H1	98	63.383	Cebus_capucinus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSCATG00000033497	RC3H1	97	61.778	Cercocebus_atys
ENSPNAG00000023439	rc3h1a	95	90.766	ENSCLAG00000011267	RC3H1	97	61.268	Chinchilla_lanigera
ENSPNAG00000023439	rc3h1a	95	90.991	ENSCSAG00000011823	RC3H1	83	62.865	Chlorocebus_sabaeus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSCPBG00000014670	RC3H1	97	90.687	Chrysemys_picta_bellii
ENSPNAG00000023439	rc3h1a	95	91.216	ENSCANG00000032120	RC3H1	97	61.749	Colobus_angolensis_palliatus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSCGRG00001020812	Rc3h1	97	61.362	Cricetulus_griseus_chok1gshd
ENSPNAG00000023439	rc3h1a	95	90.766	ENSCGRG00000011952	Rc3h1	97	61.362	Cricetulus_griseus_crigri
ENSPNAG00000023439	rc3h1a	58	46.177	ENSDNOG00000011494	RC3H1	98	49.145	Dasypus_novemcinctus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSDORG00000004855	Rc3h1	97	60.969	Dipodomys_ordii
ENSPNAG00000023439	rc3h1a	78	92.011	ENSETEG00000012064	RC3H1	77	64.269	Echinops_telfairi
ENSPNAG00000023439	rc3h1a	95	90.991	ENSEASG00005017000	RC3H1	97	62.023	Equus_asinus_asinus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSECAG00000021208	RC3H1	97	61.934	Equus_caballus
ENSPNAG00000023439	rc3h1a	81	91.608	ENSEEUG00000014861	RC3H1	74	69.871	Erinaceus_europaeus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSFCAG00000014924	RC3H1	97	61.302	Felis_catus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSFALG00000002947	RC3H1	97	60.752	Ficedula_albicollis
ENSPNAG00000023439	rc3h1a	95	90.991	ENSFDAG00000013303	RC3H1	97	61.478	Fukomys_damarensis
ENSPNAG00000023439	rc3h1a	95	90.766	ENSGALG00000004587	RC3H1	97	62.075	Gallus_gallus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSGAGG00000018194	RC3H1	97	90.466	Gopherus_agassizii
ENSPNAG00000023439	rc3h1a	95	90.991	ENSGGOG00000005735	RC3H1	97	60.320	Gorilla_gorilla
ENSPNAG00000023439	rc3h1a	95	79.505	ENSHGLG00000004183	-	95	62.788	Heterocephalus_glaber_female
ENSPNAG00000023439	rc3h1a	95	90.991	ENSHGLG00100008577	RC3H1	97	61.092	Heterocephalus_glaber_male
ENSPNAG00000023439	rc3h1a	100	88.223	ENSHCOG00000009753	rc3h1b	93	90.244	Hippocampus_comes
ENSPNAG00000023439	rc3h1a	95	90.991	ENSSTOG00000016033	RC3H1	97	61.695	Ictidomys_tridecemlineatus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSJJAG00000018915	Rc3h1	97	61.613	Jaculus_jaculus
ENSPNAG00000023439	rc3h1a	95	90.541	ENSLACG00000016186	RC3H1	100	64.499	Latimeria_chalumnae
ENSPNAG00000023439	rc3h1a	95	90.991	ENSLAFG00000004367	RC3H1	99	62.100	Loxodonta_africana
ENSPNAG00000023439	rc3h1a	95	90.991	ENSMFAG00000033725	RC3H1	97	61.627	Macaca_fascicularis
ENSPNAG00000023439	rc3h1a	95	90.991	ENSMMUG00000000630	RC3H1	97	62.659	Macaca_mulatta
ENSPNAG00000023439	rc3h1a	95	90.991	ENSMNEG00000035968	RC3H1	97	61.627	Macaca_nemestrina
ENSPNAG00000023439	rc3h1a	95	90.991	ENSMLEG00000037455	RC3H1	97	61.627	Mandrillus_leucophaeus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSMAUG00000020864	Rc3h1	92	64.194	Mesocricetus_auratus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSMICG00000003000	RC3H1	97	61.356	Microcebus_murinus
ENSPNAG00000023439	rc3h1a	79	90.463	ENSMOCG00000016587	Rc3h1	95	58.824	Microtus_ochrogaster
ENSPNAG00000023439	rc3h1a	95	90.766	ENSMODG00000004289	RC3H1	97	61.741	Monodelphis_domestica
ENSPNAG00000023439	rc3h1a	96	92.744	ENSMALG00000016106	rc3h1b	91	92.955	Monopterus_albus
ENSPNAG00000023439	rc3h1a	96	92.342	ENSMALG00000016581	-	97	92.955	Monopterus_albus
ENSPNAG00000023439	rc3h1a	95	90.766	MGP_CAROLIEiJ_G0014756	Rc3h1	97	61.062	Mus_caroli
ENSPNAG00000023439	rc3h1a	95	90.766	ENSMUSG00000040423	Rc3h1	97	61.408	Mus_musculus
ENSPNAG00000023439	rc3h1a	95	90.766	MGP_PahariEiJ_G0027992	Rc3h1	97	60.654	Mus_pahari
ENSPNAG00000023439	rc3h1a	95	90.766	MGP_SPRETEiJ_G0015563	Rc3h1	97	61.408	Mus_spretus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSMPUG00000004747	RC3H1	97	61.498	Mustela_putorius_furo
ENSPNAG00000023439	rc3h1a	95	91.667	ENSMLUG00000011127	RC3H1	97	61.470	Myotis_lucifugus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSNGAG00000011135	Rc3h1	97	61.450	Nannospalax_galili
ENSPNAG00000023439	rc3h1a	95	90.991	ENSNLEG00000015327	RC3H1	97	61.715	Nomascus_leucogenys
ENSPNAG00000023439	rc3h1a	95	76.923	ENSOPRG00000013068	RC3H1	97	54.200	Ochotona_princeps
ENSPNAG00000023439	rc3h1a	95	90.991	ENSODEG00000014185	RC3H1	97	60.686	Octodon_degus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSOANG00000000924	RC3H1	97	60.739	Ornithorhynchus_anatinus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSOCUG00000004930	RC3H1	97	61.322	Oryctolagus_cuniculus
ENSPNAG00000023439	rc3h1a	95	74.439	ENSOGAG00000004044	RC3H1	97	55.097	Otolemur_garnettii
ENSPNAG00000023439	rc3h1a	95	90.991	ENSOARG00000013011	RC3H1	97	61.004	Ovis_aries
ENSPNAG00000023439	rc3h1a	95	90.991	ENSPPAG00000039253	RC3H1	97	61.749	Pan_paniscus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSPPRG00000009007	RC3H1	97	62.023	Panthera_pardus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSPTIG00000015326	RC3H1	97	61.087	Panthera_tigris_altaica
ENSPNAG00000023439	rc3h1a	95	90.991	ENSPTRG00000001702	RC3H1	97	61.749	Pan_troglodytes
ENSPNAG00000023439	rc3h1a	95	90.991	ENSPANG00000008886	RC3H1	97	61.627	Papio_anubis
ENSPNAG00000023439	rc3h1a	95	91.216	ENSPSIG00000016181	RC3H1	97	61.205	Pelodiscus_sinensis
ENSPNAG00000023439	rc3h1a	96	92.601	ENSPMGG00000015037	rc3h1b	90	93.034	Periophthalmus_magnuspinnatus
ENSPNAG00000023439	rc3h1a	95	90.766	ENSPEMG00000011966	Rc3h1	97	61.219	Peromyscus_maniculatus_bairdii
ENSPNAG00000023439	rc3h1a	54	89.683	ENSPMAG00000000074	rc3h1a	99	53.896	Petromyzon_marinus
ENSPNAG00000023439	rc3h1a	96	90.562	ENSPCIG00000002058	RC3H1	95	90.135	Phascolarctos_cinereus
ENSPNAG00000023439	rc3h1a	96	90.787	ENSPPYG00000000490	RC3H1	98	64.165	Pongo_abelii
ENSPNAG00000023439	rc3h1a	78	71.053	ENSPCAG00000010775	RC3H1	84	71.053	Procavia_capensis
ENSPNAG00000023439	rc3h1a	54	94.737	ENSPCOG00000021795	RC3H1	97	55.911	Propithecus_coquereli
ENSPNAG00000023439	rc3h1a	81	90.083	ENSPVAG00000007593	RC3H1	97	55.654	Pteropus_vampyrus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSRBIG00000037743	RC3H1	97	61.778	Rhinopithecus_bieti
ENSPNAG00000023439	rc3h1a	95	90.991	ENSRROG00000036546	RC3H1	97	61.804	Rhinopithecus_roxellana
ENSPNAG00000023439	rc3h1a	79	91.553	ENSSBOG00000010664	RC3H1	97	57.749	Saimiri_boliviensis_boliviensis
ENSPNAG00000023439	rc3h1a	95	90.766	ENSSHAG00000007589	RC3H1	97	61.687	Sarcophilus_harrisii
ENSPNAG00000023439	rc3h1a	95	81.081	ENSSARG00000004660	RC3H1	77	81.081	Sorex_araneus
ENSPNAG00000023439	rc3h1a	95	83.784	ENSSPUG00000018472	RC3H1	97	57.835	Sphenodon_punctatus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSSSCG00000015498	RC3H1	97	62.167	Sus_scrofa
ENSPNAG00000023439	rc3h1a	95	90.766	ENSTGUG00000004090	RC3H1	97	60.721	Taeniopygia_guttata
ENSPNAG00000023439	rc3h1a	95	90.991	ENSTBEG00000005015	RC3H1	81	70.732	Tupaia_belangeri
ENSPNAG00000023439	rc3h1a	95	90.766	ENSTTRG00000008572	RC3H1	97	60.843	Tursiops_truncatus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSUAMG00000019525	RC3H1	97	62.090	Ursus_americanus
ENSPNAG00000023439	rc3h1a	95	90.991	ENSUMAG00000020087	RC3H1	97	62.093	Ursus_maritimus
ENSPNAG00000023439	rc3h1a	95	90.950	ENSVPAG00000002591	RC3H1	89	90.766	Vicugna_pacos
ENSPNAG00000023439	rc3h1a	96	90.930	ENSVVUG00000014201	RC3H1	98	85.983	Vulpes_vulpes
ENSPNAG00000023439	rc3h1a	96	90.423	ENSXETG00000020030	rc3h1	97	61.518	Xenopus_tropicalis